FeatureSynonym.xml

<?xml version="1.0" encoding="UTF-8" ?> 
 
<!DOCTYPE sqlMap 
    PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN" 
    "http://ibatis.apache.org/dtd/sql-map-2.dtd"> 
 

<sqlMap namespace="FeatureSynonym"> 
  
    <typeAlias alias="FeatureSynonym"
        type="org.gmod.schema.sequence.FeatureSynonym"/>
        
    <typeAlias alias="Feature"
        type="org.gmod.schema.sequence.Feature"/>
     
    <typeAlias alias="Synonym"
        type="org.gmod.schema.sequence.Synonym"/>
	     
    <resultMap id="map-featuresynonyms" class="Feature" groupBy="featureId" >
      <result property="featureId" column="feature_id"/>
      <result property="featureSynonyms" resultMap="map-alias" /> 
    </resultMap>
    
    <resultMap id="map-alias" 
               class="FeatureSynonym">
   	    <result property="feature.featureId" column="feature_id"/>
   	    <result property="pub.pubId" column="pub_id"/>
   	    <result property="current" column="is_current"/>
   	    <result property="internal" column="is_internal"/>
		<result property="synonym.synonymId" column="synonym_id"/>
   	    <result property="synonym.name" column="name"/>
   	    <result property="synonym.synonymSgml" column="synonym_sgml"/>
  	    <result property="synonym.cvTerm.cvTermId" column="type_id" />
     </resultMap>
     
     <resultMap id="map-alias-part-lazy" 
               class="FeatureSynonym">
   	    <result property="feature.featureId" column="feature_id"/>
   	    <result property="pub.pubId" column="pub_id"/>
   	    <result property="current" column="is_current"/>
   	    <result property="internal" column="is_internal"/>
   	    <result property="synonym" column="synonym_id" select="getSynonymBySynonymId"/>
     </resultMap>
	
	 <resultMap id="map-alias-part-lazy2" 
               class="FeatureSynonym">
   	    <result property="feature.featureId" column="feature_id"/>
   	    <result property="pub.pubId" column="pub_id"/>
   	    <result property="current" column="is_current"/>
   	    <result property="internal" column="is_internal"/>
		<result property="synonym" resultMap="Synonym.map-synonym-lazy"/>
     </resultMap>
     
     <resultMap id="map-alias-lazy" 
               class="FeatureSynonym">
   	    <result property="feature.featureId" column="feature_id"/>
   	    <result property="pub.pubId" column="pub_id"/>
   	    <result property="current" column="is_current"/>
   	    <result property="internal" column="is_internal"/>
   	    <result property="synonym" column="synonym_id" select="getSynonymBySynonymId"/>
     </resultMap>
     
     
    <!-- SQL -->
    <select id="getAllFeatureSynonymsAsFeature" resultMap="map-featuresynonyms">
      SELECT fs.*, s.name, s.synonym_sgml, s.type_id, s.synonym_id
      FROM feature_synonym fs 
      LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id 
    </select>
             
    <select id="getFeatureSynonymsByUniquename" resultMap="map-alias"
            parameterClass="Feature">
      SELECT fs.*, s.name, s.synonym_sgml, s.type_id
      FROM feature_synonym fs 
      LEFT JOIN feature f ON f.feature_id=fs.feature_id 
      LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id 
      <isNotNull property="uniqueName">                        
          WHERE uniquename=#uniqueName#
      </isNotNull>
    </select>
    
	<select id="getFeatureSynonymsBySrcFeature" resultMap="map-alias"
            parameterClass="Feature">
      SELECT fs.*, s.name, s.synonym_sgml, s.type_id 
      FROM feature_synonym fs 
      LEFT JOIN synonym s  ON fs.synonym_id=s.synonym_id 
	  LEFT JOIN featureloc fl ON fl.feature_id=fs.feature_id AND srcfeature_id=$featureId$  
	  WHERE srcfeature_id=$featureId$		
	  <isGreaterThan property="featureLoc.fmin" compareValue="0" prepend="AND"> 
           <![CDATA[ fl.fmin > $featureLoc.fmin$ AND fl.fmax < $featureLoc.fmax$ ]]>
      </isGreaterThan>
   <!--		
      SELECT fs.*, s.name, s.synonym_sgml, s.type_id
      FROM feature_synonym fs 
      LEFT JOIN feature f ON f.feature_id=fs.feature_id 
      LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id
      WHERE f.feature_id IN 
        (SELECT feature_id FROM featureloc fl WHERE srcfeature_id=$featureId$
	  <isGreaterThan property="featureLoc.fmin" compareValue="0" prepend="AND"> 
           <![CDATA[ fl.fmin > $featureLoc.fmin$ AND fl.fmax < $featureLoc.fmax$ ]]>
      </isGreaterThan>)
	-->
    </select>
	
	<select id="getFeatureSynonymsByFeatureIds" resultMap="map-alias-part-lazy2">
      SELECT fs.*, s.name, s.synonym_sgml, s.type_id 
      FROM feature_synonym fs 
      LEFT JOIN synonym s  ON fs.synonym_id=s.synonym_id 
	  WHERE fs.feature_id IN 	
	  <iterate open="(" close=")" conjunction=","> $[]$ </iterate>
    </select>
	
	
    <select id="getLazyFeatureSynonymsByUniquename" resultMap="map-alias-part-lazy"
            parameterClass="FeatureSynonym">
      SELECT fs.* 
      FROM feature_synonym fs 
      LEFT JOIN feature f ON f.feature_id=fs.feature_id 
      <isNotNull property="feature.uniqueName">                        
          WHERE uniquename=#feature.uniqueName#
      </isNotNull>
    </select>
	
    <select id="getFeatureSynonymsByName" resultMap="map-alias-lazy"
            parameterClass="Synonym">
      SELECT * FROM feature_synonym 
      WHERE
        synonym_id=
		( SELECT synonym_id FROM synonym WHERE name=#name#
	      <isNotNull property="cvTerm">  AND type_id=#cvTerm.cvTermId# </isNotNull> )
    </select>


  <!-- WRITE BACK -->
    <delete id="deleteFeatureAlias" parameterClass="FeatureSynonym">
      DELETE FROM feature_synonym WHERE
         synonym_id=$synonym.synonymId$ AND 
         feature_id=(SELECT feature_id FROM feature WHERE  
         uniquename=#feature.uniqueName#)
    </delete>
  
    <insert id="insertFeatureAlias" parameterClass="FeatureSynonym">
      INSERT INTO feature_synonym
		( synonym_id, feature_id, pub_id, is_current )
      VALUES ( $synonym.synonymId$ , 
              (SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#), 
              1, #current# )
    </insert>
  
</sqlMap>