diff --git a/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java b/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java index cbfa6be2f4bfeb8e0a4d2767fdb5759b006fd7e5..c88917d8fb2ccf22a2f05e24f0cc13cec9763ce5 100644 --- a/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java +++ b/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java @@ -46,9 +46,11 @@ public class GoBox extends AbstractCvBox { protected static String[][] evidenceCodes = { - {"IC", "IDA", "IEA", "IEP", "IGC", "IGI", "IMP", "IPI", "ISS", + {"EXP", "IC", "IDA", "IEA", "IEP", "IGC", "IGI", + "IMP", "IPI", "ISA", "ISM", "ISO", "ISS", "NAS", "ND", "RCA", "TAS", "NR" }, - {"IC \t:: inferred by curator", + {"EXP\t:: inferred from experiment", + "IC \t:: inferred by curator", "IDA\t:: inferred from direct assay", "IEA\t:: inferred from electronic annotation", "IEP\t:: inferred from expression pattern", @@ -56,13 +58,17 @@ public class GoBox extends AbstractCvBox "IGI\t:: inferred from genetic interaction", "IMP\t:: inferred from mutant phenotype", "IPI\t:: inferred from physical interaction", + "ISA\t:: inferred from sequence alignment", + "ISM\t:: inferred from sequence model", + "ISO\t:: inferred from sequence ontology", "ISS\t:: inferred from sequence or structural similarity", "NAS\t:: non-traceable author statement", "ND \t:: no biological data available", "RCA\t:: inferred from reviewed computational analysis", "TAS\t:: traceable author statement", "NR \t:: not recorded"}, - {"inferred by curator", + { "inferred from experiment", + "inferred by curator", "inferred from direct assay", "inferred from electronic annotation", "inferred from expression pattern", @@ -70,6 +76,9 @@ public class GoBox extends AbstractCvBox "inferred from genetic interaction", "inferred from mutant phenotype", "inferred from physical interaction", + "inferred from sequence alignment", + "inferred from sequence model", + "inferred from sequence ontology", "inferred from sequence or structural similarity", "non-traceable author statement", "no biological data available",