From 00a8a1fc91b755e427bf14b740a676a546380cd5 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 24 Nov 2008 16:20:42 +0000
Subject: [PATCH] update evidence codes
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9423 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../artemis/components/genebuilder/cv/GoBox.java | 15 ++++++++++++---
1 file changed, 12 insertions(+), 3 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java b/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java
index cbfa6be2f..c88917d8f 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java
@@ -46,9 +46,11 @@ public class GoBox extends AbstractCvBox
{
protected static String[][] evidenceCodes =
{
- {"IC", "IDA", "IEA", "IEP", "IGC", "IGI", "IMP", "IPI", "ISS",
+ {"EXP", "IC", "IDA", "IEA", "IEP", "IGC", "IGI",
+ "IMP", "IPI", "ISA", "ISM", "ISO", "ISS",
"NAS", "ND", "RCA", "TAS", "NR" },
- {"IC \t:: inferred by curator",
+ {"EXP\t:: inferred from experiment",
+ "IC \t:: inferred by curator",
"IDA\t:: inferred from direct assay",
"IEA\t:: inferred from electronic annotation",
"IEP\t:: inferred from expression pattern",
@@ -56,13 +58,17 @@ public class GoBox extends AbstractCvBox
"IGI\t:: inferred from genetic interaction",
"IMP\t:: inferred from mutant phenotype",
"IPI\t:: inferred from physical interaction",
+ "ISA\t:: inferred from sequence alignment",
+ "ISM\t:: inferred from sequence model",
+ "ISO\t:: inferred from sequence ontology",
"ISS\t:: inferred from sequence or structural similarity",
"NAS\t:: non-traceable author statement",
"ND \t:: no biological data available",
"RCA\t:: inferred from reviewed computational analysis",
"TAS\t:: traceable author statement",
"NR \t:: not recorded"},
- {"inferred by curator",
+ { "inferred from experiment",
+ "inferred by curator",
"inferred from direct assay",
"inferred from electronic annotation",
"inferred from expression pattern",
@@ -70,6 +76,9 @@ public class GoBox extends AbstractCvBox
"inferred from genetic interaction",
"inferred from mutant phenotype",
"inferred from physical interaction",
+ "inferred from sequence alignment",
+ "inferred from sequence model",
+ "inferred from sequence ontology",
"inferred from sequence or structural similarity",
"non-traceable author statement",
"no biological data available",
--
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