From 0567a0ef25242728bd9b4e90e78c651a42c9c338 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 16 Feb 2011 14:30:29 +0000
Subject: [PATCH] fix for isNonVariant()
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15545 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/variant/VCFRecord.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/variant/VCFRecord.java b/uk/ac/sanger/artemis/components/variant/VCFRecord.java
index caf355ba1..23a296b77 100644
--- a/uk/ac/sanger/artemis/components/variant/VCFRecord.java
+++ b/uk/ac/sanger/artemis/components/variant/VCFRecord.java
@@ -522,7 +522,7 @@ class VCFRecord
protected boolean isNonVariant()
{
- if(alt.equals("."))
+ if(alt.equals(".") && ref.length() == 1)
return true;
return false;
}
--
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