From 06a6ed49685a1048b804c88cd2073593aa4c2e43 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 7 Jul 2004 13:31:21 +0000
Subject: [PATCH] use relative dir
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@1698 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
etc/run_fasta | 11 ++++++++++-
1 file changed, 10 insertions(+), 1 deletion(-)
diff --git a/etc/run_fasta b/etc/run_fasta
index 4ce1faebc..b97164134 100755
--- a/etc/run_fasta
+++ b/etc/run_fasta
@@ -6,7 +6,7 @@
# to customise this script see the function called run_one_prog below
-RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fasta,v 1.3 2004-06-22 10:39:58 tjc Exp $"
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fasta,v 1.4 2004-07-07 13:31:21 tjc Exp $"
PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
@@ -39,6 +39,15 @@ run_one_prog () {
OUTPUT_FILE=$2
DATABASE=$3
+### strip out directory from command line
+
+ IN=`echo $INPUT_FILE | sed -n -e "s|$PWD//||p"`
+
+ if test "$IN" != "" && test -f $IN; then
+ INPUT_FILE="$IN"
+ fi
+
+ echo "\n\nIN=$IN\nPWD=$PWD\nINPUT_FILE=$INPUT_FILE\n\n"
### change these lines:
### get sequence size
--
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