From 0b1bbc01dccc8ebacbe731f3e12d020dfbd92653 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 10 Apr 2006 11:59:28 +0000
Subject: [PATCH] write as gff
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4270 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/util/DatabaseDocument.java | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/util/DatabaseDocument.java b/uk/ac/sanger/artemis/util/DatabaseDocument.java
index f4cafbdd6..45886b763 100644
--- a/uk/ac/sanger/artemis/util/DatabaseDocument.java
+++ b/uk/ac/sanger/artemis/util/DatabaseDocument.java
@@ -679,8 +679,20 @@ public class DatabaseDocument extends Document
*/
public OutputStream getOutputStream() throws IOException
{
- System.out.println("DatabaseDocument - ReadOnlyException");
- throw new ReadOnlyException("this Database Document can not be written to");
+ final File write_file = new File(System.getProperty("user.dir")+
+ System.getProperty("file.separator")+
+ getName());
+
+ final FileOutputStream file_output_stream =
+ new FileOutputStream(write_file);
+
+ if(write_file.getName().endsWith(".gz"))
+ {
+ // assume this file should be gzipped
+ return new java.util.zip.GZIPOutputStream (file_output_stream);
+ }
+ else
+ return file_output_stream;
}
--
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