From 0d972f6e435b300f784aae62e05faec04d6c820c Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Wed, 12 Sep 2012 12:06:16 +0100
Subject: [PATCH] tidy
---
uk/ac/sanger/artemis/Feature.java | 40 +------------------------------
1 file changed, 1 insertion(+), 39 deletions(-)
diff --git a/uk/ac/sanger/artemis/Feature.java b/uk/ac/sanger/artemis/Feature.java
index 9b578da47..e94868276 100644
--- a/uk/ac/sanger/artemis/Feature.java
+++ b/uk/ac/sanger/artemis/Feature.java
@@ -666,30 +666,11 @@ public class Feature
return false;
}
- /**
- * Return true if and only if the key of this feature is CDS feature and
- * the feature has a /pseudo qualifier.
- **/
- public boolean isPseudoCDS()
- {
- try
- {
- if(getKey().equals("CDS") && getQualifierByName("pseudo") != null)
- return true;
- else
- return false;
- }
- catch(InvalidRelationException e)
- {
- throw new Error("internal error - unexpected exception: " + e);
- }
- }
-
/**
* Return true if and only if the key of this feature is CDS feature and
* the feature has a /partial qualifier.
**/
- public boolean isPartialCDS()
+ private boolean isPartialCDS()
{
try
{
@@ -704,25 +685,6 @@ public class Feature
}
}
- /**
- * Return true if and only if the key of this feature is an RNA feature or
- * is a CDS feature and doesn't have a /pseudo qualifier.
- **/
- public boolean isCodingFeature()
- {
- if(getKey().equals("CDS") && ! isPseudoCDS() ||
- getKey().equals("misc_RNA") ||
- getKey().equals("mRNA") ||
- getKey().equals("precursor_RNA") ||
- getKey().equals("rRNA") ||
- getKey().equals("scRNA") ||
- getKey().equals("snRNA") ||
- getKey().equals("tRNA"))
- return true;
- else
- return false;
- }
-
/**
* Return the Location of this Feature.
**/
--
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