From 115be8f338b2c0601831e2f3e6be1e57b026d8f4 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 3 Feb 2010 12:39:46 +0000
Subject: [PATCH] add getPartOfFeatures()
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13166 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../sanger/artemis/util/DatabaseDocument.java | 25 +++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/uk/ac/sanger/artemis/util/DatabaseDocument.java b/uk/ac/sanger/artemis/util/DatabaseDocument.java
index 1a3d1225e..d809eb368 100644
--- a/uk/ac/sanger/artemis/util/DatabaseDocument.java
+++ b/uk/ac/sanger/artemis/util/DatabaseDocument.java
@@ -2278,6 +2278,31 @@ public class DatabaseDocument extends Document
return (Feature) dao.getFeatureByUniqueName(uniqueName, null);
}
+ /**
+ * Given a feature uniqueName return the features that are part_of
+ * that gene
+ * @param geneName
+ * @return
+ */
+ public Vector getPartOfFeatures(final String uniqueName)
+ {
+ Feature feature = getFeatureByUniquename(uniqueName);
+ if(feature == null)
+ return null;
+
+ Collection frs = feature.getFeatureRelationshipsForObjectId();
+ Iterator it = frs.iterator();
+ Vector partOfFeatures = new Vector(frs.size());
+ while(it.hasNext())
+ {
+ FeatureRelationship fr = (FeatureRelationship)it.next();
+ if(fr.getCvTerm().getName().equalsIgnoreCase("part_of"))
+ partOfFeatures.add(fr.getFeatureBySubjectId());
+ }
+
+ return partOfFeatures;
+ }
+
/**
* Given a gene unique name return the poplypeptide chado features that belong
* to that gene
--
GitLab