diff --git a/uk/ac/sanger/artemis/components/BasePlotGroup.java b/uk/ac/sanger/artemis/components/BasePlotGroup.java
index 09a5bbaaf0660be9a74113fa1a9d6c21cb301f87..23a16292ac56a20ab5a68dd0326777acdd431c2c 100644
--- a/uk/ac/sanger/artemis/components/BasePlotGroup.java
+++ b/uk/ac/sanger/artemis/components/BasePlotGroup.java
@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/BasePlotGroup.java,v 1.1 2004-06-09 09:46:05 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/BasePlotGroup.java,v 1.2 2004-11-09 14:24:41 tjc Exp $
*/
package uk.ac.sanger.artemis.components;
@@ -42,11 +42,12 @@ import javax.swing.*;
* which can toggled off and on.
*
* @author Kim Rutherford
- * @version $Id: BasePlotGroup.java,v 1.1 2004-06-09 09:46:05 tjc Exp $
+ * @version $Id: BasePlotGroup.java,v 1.2 2004-11-09 14:24:41 tjc Exp $
**/
public class BasePlotGroup extends JPanel
- implements DisplayAdjustmentListener {
+ implements DisplayAdjustmentListener
+{
/**
* Create a new BasePlotGroup component for the given EntryGroup.
* @param selection Used to set and display the current selection in the
@@ -55,20 +56,21 @@ public class BasePlotGroup extends JPanel
* This allows the user to double click on a base in a BasePlot and have
* the FeatureDisplay follow.
**/
- public BasePlotGroup (final EntryGroup entry_group,
- final Component owning_component,
- final Selection selection,
- final GotoEventSource goto_event_source) {
+ public BasePlotGroup(final EntryGroup entry_group,
+ final Component owning_component,
+ final Selection selection,
+ final GotoEventSource goto_event_source)
+ {
this.owning_component = owning_component;
this.entry_group = entry_group;
this.selection = selection;
this.goto_event_source = goto_event_source;
final Strand forward_strand =
- entry_group.getBases ().getForwardStrand ();
+ entry_group.getBases().getForwardStrand();
final Strand reverse_strand =
- entry_group.getBases ().getReverseStrand ();
+ entry_group.getBases().getReverseStrand();
// the following arrays are from failed tests
final float [] [] test_weights = {
@@ -114,12 +116,12 @@ public class BasePlotGroup extends JPanel
1.0F, 0.02F, 0.002F, 0.004F
};
-// plot_algorithms_temp.add (new CAIWindowAlgorithm (forward_strand, cai_test));
-// plot_algorithms_temp.add (new UserBaseAlgorithm (forward_strand, "test", test_weights));
-// plot_algorithms_temp.add (new UserBaseAlgorithm (forward_strand, "test2", test_weights2));
-// plot_algorithms_temp.add (new UserBaseAlgorithm (forward_strand, "test3", test_weights3));
+// plot_algorithms_temp.add(new CAIWindowAlgorithm(forward_strand, cai_test));
+// plot_algorithms_temp.add(new UserBaseAlgorithm(forward_strand, "test", test_weights));
+// plot_algorithms_temp.add(new UserBaseAlgorithm(forward_strand, "test2", test_weights2));
+// plot_algorithms_temp.add(new UserBaseAlgorithm(forward_strand, "test3", test_weights3));
- setLayout (gridbag);
+ setLayout(gridbag);
c.fill = GridBagConstraints.HORIZONTAL;
c.anchor = GridBagConstraints.NORTH;
@@ -128,32 +130,54 @@ public class BasePlotGroup extends JPanel
c.weightx = 1;
c.weighty = 0;
- c.insets = new Insets (0,0,5,0);
-
- addAlgorithm (new GCWindowAlgorithm (forward_strand));
- addAlgorithm (new GCSDWindowAlgorithm (forward_strand));
- addAlgorithm (new AGWindowAlgorithm (forward_strand));
- addAlgorithm (new GCFrameAlgorithm (forward_strand));
- addAlgorithm (new GCFrameAlgorithm (reverse_strand));
- addAlgorithm (new Codon12CorrelationAlgorithm(forward_strand));
- addAlgorithm (new Codon12CorrelationAlgorithm(reverse_strand));
- addAlgorithm (new GCDeviationAlgorithm (forward_strand));
- addAlgorithm (new ATDeviationAlgorithm (forward_strand));
- addAlgorithm (new KarlinSigAlgorithm (forward_strand));
+ c.insets = new Insets(0,0,5,0);
+
+ addAlgorithm(new GCWindowAlgorithm(forward_strand));
+ addAlgorithm(new GCSDWindowAlgorithm(forward_strand));
+ addAlgorithm(new AGWindowAlgorithm(forward_strand));
+ addAlgorithm(new GCFrameAlgorithm(forward_strand));
+ addAlgorithm(new GCFrameAlgorithm(reverse_strand));
+ addAlgorithm(new Codon12CorrelationAlgorithm(forward_strand));
+ addAlgorithm(new Codon12CorrelationAlgorithm(reverse_strand));
+ addAlgorithm(new GCDeviationAlgorithm(forward_strand));
+ addAlgorithm(new ATDeviationAlgorithm(forward_strand));
+ addAlgorithm(new KarlinSigAlgorithm(forward_strand));
}
+
+ /**
+ *
+ * Routine for printing graphs in artemis
+ *
+ */
+ protected void printComponent(Graphics g)
+ {
+ final Component[] children = getComponents();
+ for(int i = 0 ; i<children.length ; ++i)
+ if(children[i] instanceof BasePlot)
+ {
+ BasePlot bp = (BasePlot)children[i];
+ if(!bp.isVisible())
+ continue;
+ bp.paintCanvas(g);
+ g.translate(0,bp.getHeight());
+ }
+ }
+
+
/**
* Implementation of the DisplayAdjustmentListener interface. Invoked when
* a component (FeatureDisplay) scrolls or changes the scale. Sends the
* event to all the BasePlot components in this BasePlotGroup.
**/
- public void displayAdjustmentValueChanged (DisplayAdjustmentEvent event) {
- final Component [] children = getComponents ();
-
- for (int i = 0 ; i < children.length ; ++i) {
- if (children[i] instanceof BasePlot) {
- ((BasePlot)children[i]).displayAdjustmentValueChanged (event);
- }
+ public void displayAdjustmentValueChanged(DisplayAdjustmentEvent event)
+ {
+ final Component[] children = getComponents();
+
+ for(int i = 0 ; i<children.length ; ++i)
+ {
+ if(children[i] instanceof BasePlot)
+ ((BasePlot)children[i]).displayAdjustmentValueChanged(event);
}
}
@@ -161,24 +185,26 @@ public class BasePlotGroup extends JPanel
* Add a new BasePlot component for the given algorithm.
* @return The new BasePlot
**/
- public BasePlot addAlgorithm (final BaseAlgorithm algorithm) {
- plot_value_producers.addElement (algorithm);
+ public BasePlot addAlgorithm(final BaseAlgorithm algorithm)
+ {
+ plot_value_producers.addElement(algorithm);
- return makePlot (algorithm, gridbag, c);
+ return makePlot(algorithm, gridbag, c);
}
/**
* Return the first CodonUsageAlgorithm or null if there isn't one in the
* group.
**/
- public CodonUsageAlgorithm getCodonUsageAlgorithm () {
- for (int i = 0 ; i < plot_value_producers.size () ; ++i) {
+ public CodonUsageAlgorithm getCodonUsageAlgorithm()
+ {
+ for(int i = 0 ; i < plot_value_producers.size() ; ++i)
+ {
final BaseAlgorithm this_algorithm =
- (BaseAlgorithm) plot_value_producers.elementAt (i);
+ (BaseAlgorithm) plot_value_producers.elementAt(i);
- if (this_algorithm instanceof CodonUsageAlgorithm) {
+ if(this_algorithm instanceof CodonUsageAlgorithm)
return (CodonUsageAlgorithm) this_algorithm;
- }
}
return null;
@@ -188,11 +214,13 @@ public class BasePlotGroup extends JPanel
* Return an array containing the Algorithm objects of the BasePlot
* components in this BasePlotGroup.
**/
- public BaseAlgorithm [] getPlotAlgorithms () {
- final BaseAlgorithm [] return_array =
- new BaseAlgorithm [plot_value_producers.size ()];
+ public BaseAlgorithm[] getPlotAlgorithms()
+ {
+ final BaseAlgorithm[] return_array =
+ new BaseAlgorithm[plot_value_producers.size ()];
- for (int i = 0 ; i < plot_value_producers.size () ; ++i) {
+ for(int i = 0 ; i < plot_value_producers.size () ; ++i)
+ {
final BaseAlgorithm this_algorithm =
(BaseAlgorithm) plot_value_producers.elementAt (i);
return_array[i] = this_algorithm;
@@ -205,9 +233,9 @@ public class BasePlotGroup extends JPanel
* Return true if and only if the BasePlot for the given Algorithm is
* visible.
**/
- public boolean basePlotIsVisible (final Algorithm algorithm) {
- final Component base_plot = findPlotByAlgorithm (algorithm);
-
+ public boolean basePlotIsVisible(final Algorithm algorithm)
+ {
+ final Component base_plot = findPlotByAlgorithm(algorithm);
return base_plot.isVisible ();
}
@@ -215,11 +243,12 @@ public class BasePlotGroup extends JPanel
* Given an Algorithm, find and set the visibility of the corresponding
* BasePlot component.
**/
- public void setVisibleByAlgorithm (final Algorithm algorithm,
- final boolean visible) {
- final JComponent base_plot = findPlotByAlgorithm (algorithm);
+ public void setVisibleByAlgorithm(final Algorithm algorithm,
+ final boolean visible)
+ {
+ final JComponent base_plot = findPlotByAlgorithm(algorithm);
- base_plot.setVisible (visible);
+ base_plot.setVisible(visible);
if (getParent () != null) {
// XXX change to revalidate().
getParent ().validate ();
@@ -230,22 +259,25 @@ public class BasePlotGroup extends JPanel
* Find the BasePlot component in this BasePlotGroup object that is
* plotting the given Algorithm or null if no such BasePlot object exists.
**/
- private JComponent findPlotByAlgorithm (final Algorithm algorithm) {
- final Component [] children = getComponents ();
-
- for (int i = 0 ; i < children.length ; ++i) {
- if (children[i] instanceof BasePlot) {
+ private JComponent findPlotByAlgorithm(final Algorithm algorithm)
+ {
+ final Component[] children = getComponents();
+
+ for(int i = 0 ; i < children.length ; ++i)
+ {
+ if(children[i] instanceof BasePlot)
+ {
final Algorithm component_algorithm =
- ((BasePlot)children[i]).getAlgorithm ();
- if (component_algorithm == algorithm) {
+ ((BasePlot)children[i]).getAlgorithm ();
+ if(component_algorithm == algorithm)
return (JComponent)children[i];
- }
}
}
return null;
}
+
/**
* Create a Plot component for the given Algorithm and then make a button
* for it so that it can be shown and hidden. Note that button making is
@@ -256,18 +288,18 @@ public class BasePlotGroup extends JPanel
* Plot components.
* @return The new BasePlot
**/
- private BasePlot makePlot (BaseAlgorithm algorithm,
- GridBagLayout gridbag,
- GridBagConstraints constraints) {
-
+ private BasePlot makePlot(BaseAlgorithm algorithm,
+ GridBagLayout gridbag,
+ GridBagConstraints constraints)
+ {
final BasePlot new_base_plot =
- new BasePlot (algorithm, getSelection (), getGotoEventSource ());
+ new BasePlot(algorithm, getSelection(), getGotoEventSource());
- gridbag.setConstraints (new_base_plot, constraints);
- add (new_base_plot);
- new_base_plot.setVisible (false);
+ gridbag.setConstraints(new_base_plot, constraints);
+ add(new_base_plot);
+ new_base_plot.setVisible(false);
- getSelection ().addSelectionChangeListener (new_base_plot);
+ getSelection().addSelectionChangeListener(new_base_plot);
if (getParent () != null) {
// XXX change to revalidate().
@@ -280,21 +312,24 @@ public class BasePlotGroup extends JPanel
/**
* Return the Selection object that was passed to the constructor.
**/
- private Selection getSelection () {
+ private Selection getSelection()
+ {
return selection;
}
/**
* Return the EntryGroup object that was passed to the constructor.
**/
- private EntryGroup getEntryGroup () {
+ private EntryGroup getEntryGroup()
+ {
return entry_group;
}
/**
* Return the GotoEventSource object that was passed to the constructor.
**/
- private GotoEventSource getGotoEventSource () {
+ private GotoEventSource getGotoEventSource()
+ {
return goto_event_source;
}
diff --git a/uk/ac/sanger/artemis/components/EntryEdit.java b/uk/ac/sanger/artemis/components/EntryEdit.java
index af5d8619287e672694aa391e7050ba9be3a64042..3a20fd2350e2b4fab767cf9ecb204b1a7ccd7ae2 100644
--- a/uk/ac/sanger/artemis/components/EntryEdit.java
+++ b/uk/ac/sanger/artemis/components/EntryEdit.java
@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/EntryEdit.java,v 1.3 2004-07-29 08:44:16 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/EntryEdit.java,v 1.4 2004-11-09 14:24:41 tjc Exp $
*/
package uk.ac.sanger.artemis.components;
@@ -51,7 +51,7 @@ import javax.swing.border.BevelBorder;
* Each object of this class is used to edit an EntryGroup object.
*
* @author Kim Rutherford
- * @version $Id: EntryEdit.java,v 1.3 2004-07-29 08:44:16 tjc Exp $
+ * @version $Id: EntryEdit.java,v 1.4 2004-11-09 14:24:41 tjc Exp $
*
*/
@@ -94,7 +94,9 @@ public class EntryEdit extends JFrame
**/
private EntrySourceVector entry_sources;
+ private SelectionInfoDisplay selection_info;
+
/**
* Create a new EntryEdit object and JFrame.
* @param entry_group The EntryGroup object that this component is editing.
@@ -158,7 +160,7 @@ public class EntryEdit extends JFrame
menu_bar.setFont(default_font);
- SelectionInfoDisplay selection_info =
+ selection_info =
new SelectionInfoDisplay(getEntryGroup(), getSelection());
box_panel.add(selection_info);
@@ -213,7 +215,6 @@ public class EntryEdit extends JFrame
one_line_per_entry_display.addDisplayAdjustmentListener(feature_display);
box_panel.add(feature_display);
-
feature_display.setVisible(true);
base_display =
@@ -283,6 +284,82 @@ public class EntryEdit extends JFrame
Utilities.centreFrame(this);
}
+
+ /**
+ *
+ * Retrieve the feature list object.
+ *
+ */
+ protected FeatureList getFeatureList()
+ {
+ return feature_list;
+ }
+
+
+ /**
+ *
+ * Retrieve the base display object.
+ *
+ */
+ protected FeatureDisplay getBaseDisplay()
+ {
+ return base_display;
+ }
+
+ /**
+ *
+ * Retrieve the one line per entry object.
+ *
+ */
+ protected FeatureDisplay getOneLinePerEntryDisplay()
+ {
+ return one_line_per_entry_display;
+ }
+
+
+ /**
+ *
+ * Retrieve the base plot display object.
+ *
+ */
+ protected BasePlotGroup getBasePlotGroup()
+ {
+ return base_plot_group;
+ }
+
+
+ /**
+ *
+ * Retrieve the entry group display object.
+ *
+ */
+ protected EntryGroupDisplay getEntryGroupDisplay()
+ {
+ return group_display;
+ }
+
+
+ /**
+ *
+ * Retrieve the selection info display object.
+ *
+ */
+ protected SelectionInfoDisplay getSelectionInfoDisplay()
+ {
+ return selection_info;
+ }
+
+
+ /**
+ *
+ * Retrieve the feature display object.
+ *
+ */
+ protected FeatureDisplay getFeatureDisplay()
+ {
+ return feature_display;
+ }
+
/**
* If there are no unsaved changes, close this EntryEdit. Otherwise ask
* the user first.
@@ -1084,7 +1161,8 @@ public class EntryEdit extends JFrame
file_menu.add(clone_entry_edit);
file_menu.addSeparator();
-
+ printMenu();
+ file_menu.addSeparator();
final JMenuItem close = new JMenuItem("Close");
close.addActionListener(new ActionListener()
@@ -1098,6 +1176,34 @@ public class EntryEdit extends JFrame
file_menu.add(close);
}
+ private void printMenu()
+ {
+ JMenuItem printImage = new JMenuItem("Print Image Files (png/jpeg)...");
+ printImage.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ PrintArtemis part = new PrintArtemis(EntryEdit.this);
+ part.print();
+ }
+ });
+ file_menu.add(printImage);
+
+// print preview
+ JMenuItem printPreview = new JMenuItem("Print Preview");
+ file_menu.add(printPreview);
+ printPreview.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ PrintArtemis part = new PrintArtemis(EntryEdit.this);
+ part.printPreview();
+ }
+ });
+
+ }
+
+
/**
* Read an entry
**/
diff --git a/uk/ac/sanger/artemis/components/EntryGroupDisplay.java b/uk/ac/sanger/artemis/components/EntryGroupDisplay.java
index a37b6f6cff2cecd3a651d1665ec68aa876fdcf35..bceed251f59842520dfb1c4c8714ea0c805ad38d 100644
--- a/uk/ac/sanger/artemis/components/EntryGroupDisplay.java
+++ b/uk/ac/sanger/artemis/components/EntryGroupDisplay.java
@@ -20,14 +20,13 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/EntryGroupDisplay.java,v 1.1 2004-06-09 09:46:29 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/EntryGroupDisplay.java,v 1.2 2004-11-09 14:24:41 tjc Exp $
*/
package uk.ac.sanger.artemis.components;
import uk.ac.sanger.artemis.*;
-import java.awt.FlowLayout;
-import java.awt.Color;
+import java.awt.*;
import java.awt.event.*;
import java.util.Vector;
@@ -38,7 +37,7 @@ import javax.swing.*;
* objects in an EntryGroup.
*
* @author Kim Rutherford
- * @version $Id: EntryGroupDisplay.java,v 1.1 2004-06-09 09:46:29 tjc Exp $
+ * @version $Id: EntryGroupDisplay.java,v 1.2 2004-11-09 14:24:41 tjc Exp $
**/
public class EntryGroupDisplay extends JPanel
@@ -93,6 +92,13 @@ public class EntryGroupDisplay extends JPanel
setBackground(background_colour);
}
+
+ protected void printComponent(Graphics g)
+ {
+ super.paintComponent(g);
+ super.printChildren(g);
+ }
+
/**
* Implementation of the EntryGroupChangeListener interface. We listen to
diff --git a/uk/ac/sanger/artemis/components/FeatureDisplay.java b/uk/ac/sanger/artemis/components/FeatureDisplay.java
index c4f8c047122cf918530ec9c4d556dc8b40827487..8a36c42d24622350248b1315745f3c5ca2eaabb2 100644
--- a/uk/ac/sanger/artemis/components/FeatureDisplay.java
+++ b/uk/ac/sanger/artemis/components/FeatureDisplay.java
@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/FeatureDisplay.java,v 1.7 2004-10-28 13:06:41 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/FeatureDisplay.java,v 1.8 2004-11-09 14:24:41 tjc Exp $
*/
package uk.ac.sanger.artemis.components;
@@ -44,7 +44,7 @@ import javax.swing.JComponent;
* This component is used for displaying an Entry.
*
* @author Kim Rutherford
- * @version $Id: FeatureDisplay.java,v 1.7 2004-10-28 13:06:41 tjc Exp $
+ * @version $Id: FeatureDisplay.java,v 1.8 2004-11-09 14:24:41 tjc Exp $
**/
public class FeatureDisplay extends EntryGroupPanel
@@ -4458,6 +4458,12 @@ public class FeatureDisplay extends EntryGroupPanel
}
+ protected int getDisplayWidth()
+ {
+ return getWidth() - scale_changer.getWidth();
+ }
+
+
/**
* Return the display line that contains the given point, or -1 if
* the point is off screen.
diff --git a/uk/ac/sanger/artemis/components/PrintArtemis.java b/uk/ac/sanger/artemis/components/PrintArtemis.java
new file mode 100644
index 0000000000000000000000000000000000000000..1ebf9d7dfecd7b5720b5538cc9c45e1751d94f4a
--- /dev/null
+++ b/uk/ac/sanger/artemis/components/PrintArtemis.java
@@ -0,0 +1,442 @@
+/* PrintACT.java
+ *
+ *
+ * Copyright(C) 2000 Genome Research Limited
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or(at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
+ *
+ */
+
+package uk.ac.sanger.artemis.components;
+
+import java.awt.*;
+import java.awt.print.Paper;
+import java.awt.print.PageFormat;
+import java.awt.print.PrinterJob;
+import java.awt.image.BufferedImage;
+import java.awt.image.RenderedImage;
+import java.awt.event.*;
+import javax.swing.*;
+import java.util.*;
+import java.io.*;
+import javax.swing.border.*;
+import javax.imageio.*;
+import javax.imageio.stream.*;
+
+import uk.ac.sanger.artemis.editor.ScrollPanel;
+
+/**
+*
+* Use to print images from Artemis
+*
+*/
+public class PrintArtemis extends ScrollPanel
+{
+
+ /** act display to create image from */
+ private JCheckBox demisrawLabels = new JCheckBox("Show labels on alignment");
+ private EntryEdit entry;
+
+ private JCheckBox selectDisplay = new JCheckBox("Show Selection Header",true);
+ private JCheckBox featDisplay = new JCheckBox("Show Feature Display",true);
+ private JCheckBox groupsDisplay = new JCheckBox("Show Entries Loaded",true);
+ private JCheckBox plotsDisplay = new JCheckBox("Show Graphs",true);
+ private JCheckBox onelineDisplay = new JCheckBox("Show One Line Display",true);
+ private JCheckBox baseDisplay = new JCheckBox("Show Bases Display",true);
+ private JCheckBox featListDisplay = new JCheckBox("Show Feature List",true);
+ private int width;
+ private int height;
+
+ public PrintArtemis(EntryEdit entry)
+ {
+ this.entry = entry;
+ }
+
+
+ public void paintComponent(Graphics g)
+ {
+// let UI delegate paint first (incl. background filling)
+ super.paintComponent(g);
+ Graphics2D g2d = (Graphics2D)g.create();
+
+ // selection info
+ if(selectDisplay.isSelected())
+ {
+ entry.getSelectionInfoDisplay().paintComponent(g2d);
+ g2d.translate(0,entry.getSelectionInfoDisplay().getHeight());
+ }
+
+ // entry groups
+ if(groupsDisplay.isSelected())
+ {
+ entry.getEntryGroupDisplay().printComponent(g2d);
+ g2d.translate(0,entry.getEntryGroupDisplay().getHeight());
+ }
+
+ // plots
+ if(plotsDisplay.isSelected())
+ entry.getBasePlotGroup().printComponent(g2d);
+// g2d.translate(0,entry.getBasePlotGroup().getHeight());
+
+ // one line per entry
+ if(onelineDisplay.isSelected())
+ {
+ entry.getOneLinePerEntryDisplay().paintComponent(g2d);
+ g2d.translate(0,entry.getOneLinePerEntryDisplay().getHeight());
+ }
+
+ // feature display
+ if(featDisplay.isSelected())
+ {
+ entry.getFeatureDisplay().paintComponent(g2d);
+ g2d.translate(0,entry.getFeatureDisplay().getHeight());
+ }
+
+ // base display
+ if(baseDisplay.isSelected())
+ {
+ entry.getBaseDisplay().paintComponent(g2d);
+ g2d.translate(0,entry.getBaseDisplay().getHeight());
+ }
+
+ // feature list
+ if(featListDisplay.isSelected())
+ entry.getFeatureList().paintComponent(g2d);
+ }
+
+
+ private void setImageSize()
+ {
+ height = 0;
+ width = entry.getFeatureDisplay().getDisplayWidth();
+ if(selectDisplay.isSelected())
+ height += entry.getSelectionInfoDisplay().getHeight();
+
+ if(groupsDisplay.isSelected())
+ height += entry.getEntryGroupDisplay().getHeight();
+
+ if(plotsDisplay.isSelected())
+ height += entry.getBasePlotGroup().getHeight();
+
+ if(onelineDisplay.isSelected())
+ height += entry.getOneLinePerEntryDisplay().getHeight();
+
+ if(baseDisplay.isSelected())
+ height += entry.getBaseDisplay().getHeight();
+
+ if(featDisplay.isSelected())
+ height += entry.getFeatureDisplay().getHeight();
+
+ if(featListDisplay.isSelected())
+ height += entry.getFeatureList().getHeight();
+ setPreferredSize(new Dimension(width,height));
+ }
+
+ /**
+ *
+ * Display a print preview page
+ *
+ */
+ protected void printPreview()
+ {
+ final JFrame f = new JFrame("Print Preview");
+ JPanel jpane = (JPanel)f.getContentPane();
+
+ JScrollPane scrollPane = new JScrollPane(this);
+
+ jpane.setLayout(new BorderLayout());
+ jpane.add(scrollPane,BorderLayout.CENTER);
+
+ final Dimension dScreen = f.getToolkit().getScreenSize();
+ Dimension d = new Dimension((int)(3*dScreen.getWidth()/4),
+ (int)(dScreen.getHeight()/2));
+ f.setSize(d);
+ setImageSize();
+
+ JMenuBar menuBar = new JMenuBar();
+ JMenu filemenu = new JMenu("File");
+ menuBar.add(filemenu);
+
+// print png/jpeg
+ JMenuItem printImage = new JMenuItem("Print Image Files (png/jpeg)...");
+ printImage.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ print();
+ }
+ });
+ filemenu.add(printImage);
+
+// close
+ filemenu.add(new JSeparator());
+ JMenuItem menuClose = new JMenuItem("Close");
+ menuClose.setAccelerator(KeyStroke.getKeyStroke(
+ KeyEvent.VK_E, ActionEvent.CTRL_MASK));
+
+ filemenu.add(menuClose);
+ menuClose.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ f.dispose();
+ }
+ });
+
+ JMenu optionsmenu = new JMenu("Options");
+ menuBar.add(optionsmenu);
+
+// draw selection info
+ JCheckBoxMenuItem showSelection = new JCheckBoxMenuItem("Show Selection Header",
+ selectDisplay.isSelected());
+ showSelection.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ selectDisplay.setSelected(!selectDisplay.isSelected());
+ repaint();
+ }
+ });
+ optionsmenu.add(showSelection);
+
+// draw entry groups
+ JCheckBoxMenuItem showEntryGroups = new JCheckBoxMenuItem("Show Entries Loaded",
+ groupsDisplay.isSelected());
+ showEntryGroups.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ groupsDisplay.setSelected(!groupsDisplay.isSelected());
+ repaint();
+ }
+ });
+ optionsmenu.add(showEntryGroups);
+
+// draw graphs
+ JCheckBoxMenuItem showPlots = new JCheckBoxMenuItem("Show Graphs",
+ plotsDisplay.isSelected());
+ showPlots.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ plotsDisplay.setSelected(!plotsDisplay.isSelected());
+ repaint();
+ }
+ });
+ optionsmenu.add(showPlots);
+
+// draw one line
+ JCheckBoxMenuItem showOneLine = new JCheckBoxMenuItem("Show One Line Display",
+ onelineDisplay.isSelected());
+ showOneLine.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ onelineDisplay.setSelected(!onelineDisplay.isSelected());
+ repaint();
+ }
+ });
+ optionsmenu.add(showOneLine);
+
+// draw features
+ JCheckBoxMenuItem showFeatures = new JCheckBoxMenuItem("Show Feature Display",
+ featDisplay.isSelected());
+ showFeatures.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ featDisplay.setSelected(!featDisplay.isSelected());
+ repaint();
+ }
+ });
+ optionsmenu.add(showFeatures);
+
+// draw base display
+ JCheckBoxMenuItem showBases = new JCheckBoxMenuItem("Show Bases Display",
+ baseDisplay.isSelected());
+ showBases.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ baseDisplay.setSelected(!baseDisplay.isSelected());
+ repaint();
+ }
+ });
+ optionsmenu.add(showBases);
+
+// draw feature list
+ JCheckBoxMenuItem showFeatureList = new JCheckBoxMenuItem("Show Feature List",
+ featListDisplay.isSelected());
+ showFeatureList.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ featListDisplay.setSelected(!featListDisplay.isSelected());
+ repaint();
+ }
+ });
+ optionsmenu.add(showFeatureList);
+
+ f.setJMenuBar(menuBar);
+ f.setVisible(true);
+ }
+
+ /**
+ *
+ * Print to a jpeg or png file
+ *
+ */
+ public void print()
+ {
+ // file chooser
+ String cwd = System.getProperty("user.dir");
+ JFileChooser fc = new JFileChooser(cwd);
+ File fselect = new File(cwd+
+ System.getProperty("file.separator")+
+ "artemis.png");
+ fc.setSelectedFile(fselect);
+
+ // file name prefix
+ Box YBox = Box.createVerticalBox();
+ JLabel labFormat = new JLabel("Select Format:");
+ Font font = labFormat.getFont();
+ labFormat.setFont(font.deriveFont(Font.BOLD));
+ YBox.add(labFormat);
+
+ Box bacross = Box.createHorizontalBox();
+ JComboBox formatSelect =
+ new JComboBox(javax.imageio.ImageIO.getWriterFormatNames());
+ formatSelect.setSelectedItem("png");
+
+ Dimension d = formatSelect.getPreferredSize();
+ formatSelect.setMaximumSize(d);
+ bacross.add(Box.createHorizontalGlue());
+ bacross.add(formatSelect);
+ YBox.add(bacross);
+
+ bacross = Box.createHorizontalBox();
+ bacross.add(Box.createHorizontalGlue());
+ bacross.add(selectDisplay);
+ YBox.add(bacross);
+
+ bacross = Box.createHorizontalBox();
+ bacross.add(Box.createHorizontalGlue());
+ bacross.add(groupsDisplay);
+ YBox.add(bacross);
+
+ bacross = Box.createHorizontalBox();
+ bacross.add(Box.createHorizontalGlue());
+ bacross.add(plotsDisplay);
+ YBox.add(bacross);
+
+ bacross = Box.createHorizontalBox();
+ bacross.add(Box.createHorizontalGlue());
+ bacross.add(onelineDisplay);
+ YBox.add(bacross);
+
+ bacross = Box.createHorizontalBox();
+ bacross.add(Box.createHorizontalGlue());
+ bacross.add(featDisplay);
+ YBox.add(bacross);
+
+ bacross = Box.createHorizontalBox();
+ bacross.add(Box.createHorizontalGlue());
+ bacross.add(baseDisplay);
+ YBox.add(bacross);
+
+ bacross = Box.createHorizontalBox();
+ bacross.add(Box.createHorizontalGlue());
+ bacross.add(featListDisplay);
+ YBox.add(bacross);
+
+ // file prefix & format options
+ fc.setAccessory(YBox);
+ int n = fc.showSaveDialog(null);
+ if(n == JFileChooser.CANCEL_OPTION)
+ return;
+
+ // remove file extension
+ String fsave = fc.getSelectedFile().getAbsolutePath().toLowerCase();
+ if(fsave.endsWith(".png") ||
+ fsave.endsWith(".jpg") ||
+ fsave.endsWith(".jpeg") )
+ {
+ int ind = fsave.lastIndexOf(".");
+ fsave = fc.getSelectedFile().getAbsolutePath();
+ fsave = fsave.substring(0,ind);
+ }
+ else
+ fsave = fc.getSelectedFile().getAbsolutePath();
+
+ // image type
+ String ftype = (String)formatSelect.getSelectedItem();
+ try
+ {
+ RenderedImage rendImage = createImage();
+ writeImageToFile(rendImage, new File(fsave+"."+ftype),
+ ftype);
+ }
+ catch(NoClassDefFoundError ex)
+ {
+ JOptionPane.showMessageDialog(this,
+ "This option requires Java 1.4 or higher.");
+ }
+ }
+
+ /**
+ *
+ * Returns a generated image
+ * @param pageIndex page number
+ * @return image
+ *
+ */
+ private RenderedImage createImage()
+ {
+ setImageSize();
+ // Create a buffered image in which to draw
+ BufferedImage bufferedImage = new BufferedImage(
+ width,height,
+ BufferedImage.TYPE_INT_RGB);
+ // Create a graphics contents on the buffered image
+ Graphics2D g2d = bufferedImage.createGraphics();
+ paintComponent(g2d);
+
+ return bufferedImage;
+ }
+
+
+ /**
+ *
+ * Write out the image
+ * @param image image
+ * @param file file to write image to
+ * @param type type of image
+ *
+ */
+ private void writeImageToFile(RenderedImage image,
+ File file, String type)
+ {
+ try
+ {
+ javax.imageio.ImageIO.write(image,type,file);
+ }
+ catch ( IOException e )
+ {
+ System.out.println("Java 1.4+ is required");
+ e.printStackTrace();
+ }
+ }
+
+}