From 140473d1a8c81090d164a5c744ec221a81bc65a2 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 1 Aug 2008 12:40:41 +0000
Subject: [PATCH] retrieve the features that are featureloced to feaure
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8424 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
artemis_sqlmap/Feature.xml | 12 +++++++-----
1 file changed, 7 insertions(+), 5 deletions(-)
diff --git a/artemis_sqlmap/Feature.xml b/artemis_sqlmap/Feature.xml
index 8756897a8..d85772d9d 100644
--- a/artemis_sqlmap/Feature.xml
+++ b/artemis_sqlmap/Feature.xml
@@ -108,10 +108,14 @@
<resultMap id="map-similaritymatch" class="Feature"
groupBy="featureId" extends="map-basicfeature">
- <result property="cvTerm" column="type_id" select="getCvtermByCvTermId" />
+ <result property="cvTerm.cvTermId" column="type_id" />
<result property="featureLocsForFeatureId" resultMap="FeatureLoc.map-location" />
<result property="featureProps" column="{feature_id=id}"
select="getFeaturePropByFeatureId" />
+ <result property="featureDbXRefs" column="{featureId=id}"
+ select="getFeatureDbXRef" />
+ <result property="dbXRef" column="dbXRefId"
+ select="getDbXRefByDbXRefId" />
<result property="analysisFeatures" resultMap="AnalysisFeature.map-analysisfeature" />
</resultMap>
@@ -316,6 +320,7 @@
f.uniquename,
f.is_obsolete AS obsolete,
f.type_id,
+ f.dbxref_id AS dbXRefId,
f.name AS feature_name,
f.seqlen,
f.residues,
@@ -326,10 +331,7 @@
LEFT JOIN featureloc fl ON f.feature_id=fl.feature_id
LEFT JOIN analysisfeature af ON f.feature_id=af.feature_id
LEFT JOIN analysis a ON af.analysis_id=a.analysis_id
- WHERE f.type_id NOT IN (SELECT cvterm_id FROM cvterm where name='polypeptide_domain'
- OR name='membrane_structure' OR name='non_cytoplasm_location'
- OR name='transmembrane' OR name='cytoplasm_location')
- AND f.feature_id IN
+ WHERE f.feature_id IN
</sql>
<!-- Returns matches for all features on a given srcfeature -->
--
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