diff --git a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java index bd5b4e5e517651cff3632e5857f1281ed2b9800e..5e1697dd3910db65774590ab20918d29ae1b0bc6 100644 --- a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java +++ b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java @@ -830,7 +830,12 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry nbases += seglen; } - String pos = sequenceloc+".."+(sequenceloc+2); + String pos; + if(f.isForwardFeature()) + pos = sequenceloc+".."+(sequenceloc+2); + else + pos = (sequenceloc-2)+".."+sequenceloc; + qualifiers.add(new Qualifier("transl_except","(pos:"+pos+",aa:Sec)")); }