diff --git a/README b/README index b59ad0fc1afa5eece0f89edd8dde0d6845378170..bad513a64641ac58385710e420cc8029d52b2e5b 100644 --- a/README +++ b/README @@ -1,23 +1,25 @@ INTRODUCTION -Artemis is a DNA sequence viewer and annotation tool that allows visualisation -of sequence features and the results of analyses within the context of the -sequence, and its six-frame translation. Artemis is written in Java, reads -EMBL or GENBANK format sequences and feature tables, and can work on sequences -of any size. +Artemis is a free genome browser and annotation tool that allows visualisation +of sequence features, next generation data and the results of analyses within +the context of the sequence, and also its six-frame translation. Artemis is written +in Java, and is available for UNIX, Macintosh and Windows systems. It can read +EMBL and GENBANK database entries or sequence in FASTA, indexed FASTA or raw format. +Other sequence features can be in EMBL, GENBANK or GFF format. -ACT is a DNA sequence comparison viewer based on Artemis. The name ACT stands -for Artemis Comparison Tool. ACT is written in Java, reads EMBL or GENBANK -format sequences and feature tables, and can work on sequences of any size. +ACT is a free tool for displaying pairwise comparisons between two or more DNA +sequences. It can be used to identify and analyse regions of similarity and +difference between genomes and to explore conservation of synteny, in the context +of the entire sequences and their annotation. DOCUMENTATION The Artemis user manual is at: - http://www.sanger.ac.uk/Software/Artemis/manual + http://www.sanger.ac.uk/resources/software/artemis/ The ACT user manual is at: - http://www.sanger.ac.uk/Software/ACT/manual + http://www.sanger.ac.uk/resources/software/act/ INSTALLATION @@ -30,14 +32,12 @@ Artemis may be freely distributed under the terms of the GNU Public License, and should run on any system with a recent version of Java. For information on how to get Artemis see this web page: - http://www.sanger.ac.uk/Software/Artemis/ -or go straight to the ftp directory at: - ftp://ftp.sanger.ac.uk/pub/pathogens/software/artemis + http://www.sanger.ac.uk/resources/software/artemis/ COPYRIGHT -Copyright (C) 1998-2009 Genome Research Limited +Copyright (C) 1998-2011 Genome Research Limited This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License