diff --git a/Makefile b/Makefile
index da94992f8c9b5fb403a632072c3f4860934eab76..ee0a2a5d053c6e5e08e901f362c85592a13e8036 100644
--- a/Makefile
+++ b/Makefile
@@ -295,9 +295,9 @@ artemis.jar : $(CLASSES)
 	                     artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \
         echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw" > manifest-circular; \
         jar cmf manifest-circular DNAPlotter.jar images/PSUlogo.gif README etc \
-                             uk org/gmod org/apache org/biojava/bio/ com/ibatis/common/jdbc/ net/sf/samtools/ LICENSE.Apache j2ssh.properties; \
+                             uk org/gmod org/w3c org/apache org/biojava/bio/ com/ibatis/common/jdbc/ net/sf/samtools/ LICENSE.Apache j2ssh.properties; \
 	echo "Main-Class: uk.ac.sanger.artemis.components.alignment.BamView" > manifest-bamview; \
-	jar cmf manifest-bamview BamView.jar etc uk org net/sf com/ibatis; \
+	jar cmf manifest-bamview BamView.jar etc uk org/apache org/biojava org/biojavax org/gmod org/w3c net/sf com/ibatis; \
 	echo "Main-Class: uk.ac.sanger.artemis.components.ActMain" > manifest-act; \
 	jar cmf manifest-act act.jar images/PSUlogo.gif images/icon.gif README etc \
 	                     artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \