From 1fbd0ecc897b546637f4fc933d53a54c1a7e64f1 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 22 Sep 2011 12:39:20 +0100
Subject: [PATCH] fix for selenocysteine on reverse strand
---
uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
index d84cf7b8f..afcf17383 100644
--- a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
+++ b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
@@ -834,7 +834,7 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry
if(f.isForwardFeature())
pos = sequenceloc+".."+(sequenceloc+2);
else
- pos = (sequenceloc-2)+".."+sequenceloc;
+ pos = sequenceloc+".."+(sequenceloc-2);
qualifiers.add(new Qualifier("transl_except","(pos:"+pos+",aa:Sec)"));
}
--
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