From 2367d917ee782d954d99197855dce0446236cf60 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 11 Jun 2010 08:24:35 +0000
Subject: [PATCH] use eval as some systems may not have csh

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@14006 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
 etc/run_blastn  | 4 ++--
 etc/run_blastp  | 4 ++--
 etc/run_blastx  | 4 ++--
 etc/run_fasta   | 4 ++--
 etc/run_fastx   | 4 ++--
 etc/run_tblastn | 4 ++--
 etc/run_tblastx | 4 ++--
 7 files changed, 14 insertions(+), 14 deletions(-)

diff --git a/etc/run_blastn b/etc/run_blastn
index db07c1530..136416355 100755
--- a/etc/run_blastn
+++ b/etc/run_blastn
@@ -29,8 +29,8 @@ fi
 
 
 # expand any ~ or environment variables
-EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
-
+#EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+eval EXPANDED_DATABASE="$DATABASE"
 
 ### change this function to suit your site:
 
diff --git a/etc/run_blastp b/etc/run_blastp
index 6edeae90d..b26e6d757 100755
--- a/etc/run_blastp
+++ b/etc/run_blastp
@@ -29,8 +29,8 @@ fi
 
 
 # expand any ~ or environment variables
-EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
-
+#EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+eval EXPANDED_DATABASE="$DATABASE"
 
 ### change this function to suit your site:
 
diff --git a/etc/run_blastx b/etc/run_blastx
index 996bd8e95..4ee0396fc 100755
--- a/etc/run_blastx
+++ b/etc/run_blastx
@@ -29,8 +29,8 @@ fi
 
 
 # expand any ~ or environment variables
-EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
-
+#EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+eval EXPANDED_DATABASE="$DATABASE"
 
 ### change this function to suit your site:
 
diff --git a/etc/run_fasta b/etc/run_fasta
index 33ccfc483..554cf0d7a 100755
--- a/etc/run_fasta
+++ b/etc/run_fasta
@@ -51,8 +51,8 @@ if [ -f "$FASTLIBS" ]; then
 fi
 
 # expand any ~ or environment variables
-EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
-
+#EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+eval EXPANDED_DATABASE="$DATABASE"
 
 ### change this function to suit your site:
 
diff --git a/etc/run_fastx b/etc/run_fastx
index e37d4b4cd..a63955066 100644
--- a/etc/run_fastx
+++ b/etc/run_fastx
@@ -29,8 +29,8 @@ fi
 
 
 # expand any ~ or environment variables
-EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
-
+#EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+eval EXPANDED_DATABASE="$DATABASE"
 
 ### change this function to suit your site:
 
diff --git a/etc/run_tblastn b/etc/run_tblastn
index 1898bb414..151b783fa 100755
--- a/etc/run_tblastn
+++ b/etc/run_tblastn
@@ -29,8 +29,8 @@ fi
 
 
 # expand any ~ or environment variables
-EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
-
+#EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+eval EXPANDED_DATABASE="$DATABASE"
 
 ### change this function to suit your site:
 
diff --git a/etc/run_tblastx b/etc/run_tblastx
index eb4867d24..4f7fee6c8 100755
--- a/etc/run_tblastx
+++ b/etc/run_tblastx
@@ -29,8 +29,8 @@ fi
 
 
 # expand any ~ or environment variables
-EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
-
+#EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+eval EXPANDED_DATABASE="$DATABASE"
 
 ### change this function to suit your site:
 
-- 
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