diff --git a/lib/j2ssh/j2ssh.properties b/lib/j2ssh/j2ssh.properties index 68eced4a732ddf2623ec773720b53395c2cf5d00..cbbc82ff0484d12febec0a9613c67e7601257691 100644 --- a/lib/j2ssh/j2ssh.properties +++ b/lib/j2ssh/j2ssh.properties @@ -5,19 +5,24 @@ # # # default login options -port=2222 +port=2224 host=localhost # # # Sanger options # -bsub=bsub -q normal -n 1 -R 'select[blast && mem > 500] rusage[mem=500]' +#bsub=bsub -q normal -n 1 -R 'select[blast && mem > 500] rusage[mem=500]' +bsub=bsub -q normal -n 1 -R 'select[mem > 500] rusage[mem=500]' blastp=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -p blastx=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -x tblastx=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -tx blastn=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -fasta=-I /nfs/disk222/yeastpub/bio-soft/fasta/fasta33_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs -fastx=-I /nfs/disk222/yeastpub/bio-soft/fasta/fastx33_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs + +#fasta=-I /nfs/disk222/yeastpub/bio-soft/fasta/fasta33_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs +#fastx=-I /nfs/disk222/yeastpub/bio-soft/fasta/fastx33_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs +fasta=-I /software/pathogen/external/bin/fasta34_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs +fastx=-I /software/pathogen/external/bin/fastx34_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs + # # # Generic default options