From 28afaf17f662646b37e21dc1f16d415e561cd019 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Tue, 11 Oct 2011 17:36:32 +0100
Subject: [PATCH] fix for reverse strand codon_start/phase
---
uk/ac/sanger/artemis/io/GFFDocumentEntry.java | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/io/GFFDocumentEntry.java b/uk/ac/sanger/artemis/io/GFFDocumentEntry.java
index 51aecf5b8..dbb742752 100644
--- a/uk/ac/sanger/artemis/io/GFFDocumentEntry.java
+++ b/uk/ac/sanger/artemis/io/GFFDocumentEntry.java
@@ -759,14 +759,14 @@ public class GFFDocumentEntry extends SimpleDocumentEntry
// prediction tool
new_feature.removeQualifierByName("codon_start");
}
- else
+/* else
{
final Qualifier old_codon_start_qualifier = first_old_feature
.getQualifierByName("codon_start");
if(old_codon_start_qualifier != null)
new_feature.setQualifier(old_codon_start_qualifier);
- }
+ }*/
forcedAdd(new_feature);
//gene.addExon(transcript_id, new_feature, true );
new_set.add(new_feature);
--
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