From 2911d94e4659d9ff77ad82ee1b0a7eb5b4227356 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 19 Feb 2009 16:11:15 +0000
Subject: [PATCH] update
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9840 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../circular/digest/EmbossTableParserTest.java | 11 ++++++++++-
.../ac/sanger/artemis/circular/digest/UtilsTest.java | 2 ++
2 files changed, 12 insertions(+), 1 deletion(-)
diff --git a/test/uk/ac/sanger/artemis/circular/digest/EmbossTableParserTest.java b/test/uk/ac/sanger/artemis/circular/digest/EmbossTableParserTest.java
index 791afb9cf..c23c04465 100644
--- a/test/uk/ac/sanger/artemis/circular/digest/EmbossTableParserTest.java
+++ b/test/uk/ac/sanger/artemis/circular/digest/EmbossTableParserTest.java
@@ -47,6 +47,15 @@ public class EmbossTableParserTest
InputStreamReader reader = new InputStreamReader(inputStream);
EmbossTableParser etp = new EmbossTableParser();
- etp.parse(new BufferedReader(reader));
+ List<CutSite> cutSites = etp.parse(new BufferedReader(reader));
+ CutSite firstCutSite = cutSites.get(0);
+
+ assertEquals("Number of cut sites", cutSites.size(), 4);
+ assertEquals("Enzyme name", firstCutSite.getEnzymeName(), "HindIII");
+ assertEquals("3prime", firstCutSite.getThreePrime(), 85);
+ assertEquals("5prime", firstCutSite.getFivePrime(), 81);
+ assertEquals("3prime-rev", firstCutSite.getThreePrimeRev(), 0);
+ assertEquals("5prime-rev", firstCutSite.getFivePrimeRev(), 0);
+ assertTrue("Cut site strand", firstCutSite.isForward());
}
}
diff --git a/test/uk/ac/sanger/artemis/circular/digest/UtilsTest.java b/test/uk/ac/sanger/artemis/circular/digest/UtilsTest.java
index 33be3fdc4..d6f258431 100644
--- a/test/uk/ac/sanger/artemis/circular/digest/UtilsTest.java
+++ b/test/uk/ac/sanger/artemis/circular/digest/UtilsTest.java
@@ -23,6 +23,7 @@ import static org.junit.Assert.*;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.util.List;
+import org.junit.Ignore;
import org.junit.Test;
import uk.ac.sanger.artemis.circular.digest.CutSite;
@@ -32,6 +33,7 @@ public class UtilsTest
/**
* Test that restrict output is parsed
*/
+ @Ignore("Use EmbossTableParserTest")
@Test
public void testFindCutSitesFromEmbossReport()
{
--
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