From 2c97d05e46c41a59a63f76918a5bbd775483091d Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Tue, 27 Mar 2007 09:44:04 +0000
Subject: [PATCH] tidy
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@5793 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/util/DatabaseDocument.java | 12 ++++--------
1 file changed, 4 insertions(+), 8 deletions(-)
diff --git a/uk/ac/sanger/artemis/util/DatabaseDocument.java b/uk/ac/sanger/artemis/util/DatabaseDocument.java
index d0562c01b..026403c76 100644
--- a/uk/ac/sanger/artemis/util/DatabaseDocument.java
+++ b/uk/ac/sanger/artemis/util/DatabaseDocument.java
@@ -373,13 +373,11 @@ public class DatabaseDocument extends Document
List schemaList = new Vector();
schemaList.add(schema);
-
- return new ByteArrayInputStream(getGeneFeature(srcFeatureId,
- schemaList, dao).getBytes());
+ ByteBuffer bb = getGeneFeature(srcFeatureId,
+ schemaList, dao);
+ return new ByteArrayInputStream(bb.getBytes());
}
-
gff_buffer = getGff(dao);
-
if(splitGFFEntry)
{
@@ -751,15 +749,13 @@ public class DatabaseDocument extends Document
for(int j = 0; j < transcipt_relations.size(); j++)
{
id = ((FeatureRelationship) transcipt_relations.get(j)).getFeatureBySubjectId().getFeatureId();
-
buildGffLineFromId(dao, id, id_store, parent.getUniqueName(),
src_id, buff, null);
}
}
-
- System.out.println( new String(buff.getBytes()) );
+ logger4j.debug( new String(buff.getBytes()) );
return buff;
}
--
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