From 2fc12ded8c3b24ab38a3e78a012cce1fc0c3fa5a Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 18 Oct 2006 14:42:06 +0000
Subject: [PATCH] fix classpath for db access
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4849 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
act | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/act b/act
index 60c26e4bf..4915ecac6 100755
--- a/act
+++ b/act
@@ -7,7 +7,7 @@
# /usr/local/bin/ or elsewhere.
-# $Header: //tmp/pathsoft/artemis/act,v 1.9 2006-06-22 12:40:25 tjc Exp $
+# $Header: //tmp/pathsoft/artemis/act,v 1.10 2006-10-18 14:42:06 tjc Exp $
# resolve links - $0 may be a link
PRG=$0
@@ -29,11 +29,14 @@ done
ACT_HOME=`dirname "$PRG"`/.
-CLASSPATH=$ACT_HOME:$ACT_HOME/lib/JacORB.jar:$ACT_HOME/lib/jemAlign.jar:$ACT_HOME/lib/jakarta-regexp-1.2.jar:$ACT_HOME/lib/macos.jar:$CLASSPATH
+CLASSPATH=$ACT_HOME:$ACT_HOME/lib/JacORB.jar:$ACT_HOME/lib/jemAlign.jar:$ACT_HOME/lib/jakarta-regexp-1.2.jar:$ACT_HOME/lib/macos.jar:$ACT_HOME/lib/chado-14-interface.jar:$ACT_HOME/lib/postgresql-8.1-407.jdbc2ee.jar:$CLASSPATH
# j2ssh jars
CLASSPATH=$CLASSPATH:$ACT_HOME/lib/j2ssh/commons-logging.jar:$ACT_HOME/lib/j2ssh/j2ssh-core.jar:$ACT_HOME/lib/j2ssh/
+# iBatis jars
+CLASSPATH=$CLASSPATH:$ACT_HOME/lib/ibatis/ibatis-common-2.jar:$ACT_HOME/lib/ibatis/ibatis-sqlmap-2.jar:$ACT_HOME/lib/ibatis/:$ACT_HOME/lib/ibatis/log4j-1.2.13.jar
+
export CLASSPATH
ACT_PROPERTIES="-Dartemis.environment=UNIX"
@@ -64,7 +67,7 @@ else
if [ x$1 = x-h -o x$1 = x--help ]
then
cat <<EOF
-usage: $0 [EMBL/GENBANK/SEQUENCE file] [crunch file] [EMBL/GENBANK/SEQUENCE file]
+usage: $0 [EMBL/GENBANK/SEQUENCE file] [crunch file] [EMBL/GENBANK/SEQUENCE file]
EOF
exit 0
fi
@@ -108,5 +111,5 @@ then
echo starting ACT with flags: $FLAGS 1>&2
fi
-$JAVA $FLAGS $ACT_PROPERTIES uk.ac.sanger.artemis.components.ActMain $*
+$JAVA $FLAGS -Djdbc.drivers=org.postgresql.Driver $ACT_PROPERTIES uk.ac.sanger.artemis.components.ActMain $*
--
GitLab