From 3a48c15e97d8d7fa9face3830d0cddd02f246381 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Sat, 25 Aug 2007 17:07:40 +0000
Subject: [PATCH] add getFeatureCvTermsNoRankBySrcFeature
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@6330 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
artemis_sqlmap/FeatureCvTerm.xml | 31 +++++++++++++++++++++++++++++--
1 file changed, 29 insertions(+), 2 deletions(-)
diff --git a/artemis_sqlmap/FeatureCvTerm.xml b/artemis_sqlmap/FeatureCvTerm.xml
index bbe9e696e..714066dbf 100644
--- a/artemis_sqlmap/FeatureCvTerm.xml
+++ b/artemis_sqlmap/FeatureCvTerm.xml
@@ -69,6 +69,33 @@
</select>
+ <select id="getFeatureCvTermsNoRankBySrcFeature" parameterClass="org.gmod.schema.sequence.Feature"
+ resultMap="select-featurecvterm-no-rank">
+ SELECT
+ fc.*,
+ fcp.type_id, fcp.value, fcp.rank AS fcp_rank,
+ cvterm.name AS cvterm_name,
+ cv.name AS cv_name,
+ pub.pub_id,
+ pub.uniquename,
+ db.name,
+ dbxref.accession
+ FROM feature_cvterm fc
+ LEFT JOIN feature_cvtermprop fcp ON fc.feature_cvterm_id=fcp.feature_cvterm_id
+ LEFT JOIN cvterm ON cvterm.cvterm_id=fc.cvterm_id
+ LEFT JOIN cv ON cvterm.cv_id=cv.cv_id
+ LEFT JOIN pub ON fc.pub_id=pub.pub_id
+ LEFT JOIN dbxref ON cvterm.dbxref_id=dbxref.dbxref_id
+ LEFT JOIN db ON dbxref.db_id=db.db_id
+ WHERE feature_id IN
+ (SELECT feature_id FROM featureloc fl WHERE srcfeature_id=$featureId$
+ <isGreaterThan property="featureLoc.fmin" compareValue="0" prepend="AND">
+ <![CDATA[ fl.fmin > $featureLoc.fmin$ AND fl.fmax < $featureLoc.fmax$ ]]>
+ </isGreaterThan>)
+ ORDER BY fc.feature_cvterm_id, type_id, fcp.rank;
+ </select>
+
+
<select id="getFeatureCvTermsByFeature" parameterClass="Feature"
resultMap="select-featurecvterm">
SELECT
@@ -135,8 +162,8 @@
WHERE pg_namespace.oid=pg_class.relnamespace AND
attrelid=pg_class.oid AND
relname='feature_cvterm' AND
- attnum > 0 AND
- nspname=#value#
+ attnum > 0
+ <!--AND nspname=#value#-->
</select>
--
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