diff --git a/etc/run_fasta b/etc/run_fasta index 31147c37b6c9076465f083ef1187b1b9d34baf0b..bf6574a5d608c9d0c6c90eea63491432eaa4b43c 100755 --- a/etc/run_fasta +++ b/etc/run_fasta @@ -6,7 +6,7 @@ # to customise this script see the function called run_one_prog below -RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fasta,v 1.12 2005-02-21 11:51:32 tjc Exp $" +RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fasta,v 1.13 2005-12-19 19:38:39 tjc Exp $" PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'` @@ -41,9 +41,12 @@ run_one_prog () { ### change these lines: + EXEC=${EXEC-`which fasta34 2>/dev/null`} - EXEC=fasta34 - + if [ ! -x "$EXEC" ]; then + EXEC=`find Artemis* -name fasta34 2>/dev/null` + fi + echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2 echo "$OUTPUT_FILE using database $DATABASE" 1>&2