diff --git a/uk/ac/sanger/artemis/io/ValidateFeature.java b/uk/ac/sanger/artemis/io/ValidateFeature.java index bbc526d743fdde086258ad6b89d443337097995d..333860d2057df76b841523142894fcfd7b1359b8 100644 --- a/uk/ac/sanger/artemis/io/ValidateFeature.java +++ b/uk/ac/sanger/artemis/io/ValidateFeature.java @@ -76,14 +76,15 @@ public class ValidateFeature private static String[] RESERVED_TAGS = { "ID", "Name", "Alias", "Parent", "Target", "Gap", "Derives_from", "Note", - "Dbxref", "Ontology_term", "Is_circular"}; + "Dbxref", "Ontology_term", "Is_circular", + "Start_range", "End_range"}; private static String[] OTHER_RESERVED_TAGS = { "GO", "EC_number", "EMBL_qualifier", "SignalP_prediction", "GPI_anchor_cleavage_site", "GPI_anchored", "PlasmoAP_score" }; private static String[] ALLOWED_TAGS_WITH_NO_VALUE = - { "isFminPartial", "isFmaxPartial", "stop_codon_redefined_as_selenocysteine", "Name" }; + { "stop_codon_redefined_as_selenocysteine", "Name" }; private EntryGroup entryGrp; private FeaturePredicate cds_predicate; @@ -648,9 +649,9 @@ public class ValidateFeature { try { - if(feature.getQualifierByName("isFminPartial") != null) + if(feature.getQualifierByName("Start_range") != null) low_pos = "<"+low_pos; - if(feature.getQualifierByName("isFmaxPartial") != null) + if(feature.getQualifierByName("End_range") != null) high_pos = ">"+high_pos; } catch (InvalidRelationException e){}