From 3fb5bf0ef19f6a756ed5e826745d7583fc3ce7ff Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 15 Aug 2013 16:08:31 +0100
Subject: [PATCH] change isFminPartial / isFmaxPartial to Start_range /
End_range
---
uk/ac/sanger/artemis/io/ValidateFeature.java | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/uk/ac/sanger/artemis/io/ValidateFeature.java b/uk/ac/sanger/artemis/io/ValidateFeature.java
index bbc526d74..333860d20 100644
--- a/uk/ac/sanger/artemis/io/ValidateFeature.java
+++ b/uk/ac/sanger/artemis/io/ValidateFeature.java
@@ -76,14 +76,15 @@ public class ValidateFeature
private static String[] RESERVED_TAGS =
{ "ID", "Name", "Alias", "Parent",
"Target", "Gap", "Derives_from", "Note",
- "Dbxref", "Ontology_term", "Is_circular"};
+ "Dbxref", "Ontology_term", "Is_circular",
+ "Start_range", "End_range"};
private static String[] OTHER_RESERVED_TAGS =
{ "GO", "EC_number", "EMBL_qualifier", "SignalP_prediction",
"GPI_anchor_cleavage_site", "GPI_anchored", "PlasmoAP_score" };
private static String[] ALLOWED_TAGS_WITH_NO_VALUE =
- { "isFminPartial", "isFmaxPartial", "stop_codon_redefined_as_selenocysteine", "Name" };
+ { "stop_codon_redefined_as_selenocysteine", "Name" };
private EntryGroup entryGrp;
private FeaturePredicate cds_predicate;
@@ -648,9 +649,9 @@ public class ValidateFeature
{
try
{
- if(feature.getQualifierByName("isFminPartial") != null)
+ if(feature.getQualifierByName("Start_range") != null)
low_pos = "<"+low_pos;
- if(feature.getQualifierByName("isFmaxPartial") != null)
+ if(feature.getQualifierByName("End_range") != null)
high_pos = ">"+high_pos;
}
catch (InvalidRelationException e){}
--
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