From 40e177b5974522c9a058b4fd2f1aeed280327cd1 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 6 Jan 2010 15:06:28 +0000
Subject: [PATCH] fix for drawing SNPs on a linear plot
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12825 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/circular/Block.java | 27 +++++++++++++++++++-----
1 file changed, 22 insertions(+), 5 deletions(-)
diff --git a/uk/ac/sanger/artemis/circular/Block.java b/uk/ac/sanger/artemis/circular/Block.java
index 355e96695..3473de501 100644
--- a/uk/ac/sanger/artemis/circular/Block.java
+++ b/uk/ac/sanger/artemis/circular/Block.java
@@ -373,7 +373,27 @@ public class Block implements Transferable
int xstart = (int) ((bstart-(lineNumberStart*basesPerLine))*singleBaseWidth)+borderWidth2;
int xend = (int) ((bend-(lineNumberEnd*basesPerLine))*singleBaseWidth)+borderWidth2;
- BasicStroke basicstroke = new BasicStroke(
+ if(rect == null)
+ rect = new Vector();
+
+ BasicStroke basicstroke;
+ if(bstart == bend)
+ {
+ // SNP / variation feature
+ basicstroke = new BasicStroke(
+ 1.f,
+ BasicStroke.CAP_BUTT,
+ BasicStroke.JOIN_MITER);
+ g2.setStroke(basicstroke);
+ g2.drawLine(xstart,ypos,xstart,(int) (ypos+strokeSize));
+ Rectangle r = new Rectangle();
+ r.setLocation(xstart,ypos);
+ r.setSize(current_dna.getWidth()-borderWidth2-xstart,2);
+ rect.add(r);
+ return;
+ }
+
+ basicstroke = new BasicStroke(
strokeSize,
BasicStroke.CAP_BUTT,
BasicStroke.JOIN_MITER);
@@ -386,10 +406,7 @@ public class Block implements Transferable
xstart+=strokeSize/2;
g2.fillPolygon(xPoints,yPoints,3);
}
-
-
- if(rect == null)
- rect = new Vector();
+
Rectangle r;
--
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