From 42c891a18225953d77393f9a508b6123420dfd0f Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 12 May 2011 10:23:50 +0000
Subject: [PATCH] allow for X
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@16073 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/variant/VariantBase.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/variant/VariantBase.java b/uk/ac/sanger/artemis/components/variant/VariantBase.java
index 0ffad2377..c69637c9c 100644
--- a/uk/ac/sanger/artemis/components/variant/VariantBase.java
+++ b/uk/ac/sanger/artemis/components/variant/VariantBase.java
@@ -109,7 +109,7 @@ public class VariantBase
protected boolean isNonVariant()
{
- if (alt.equals(".") && record.getRef().length() == 1)
+ if ((alt.equals(".") || alt.equals("X")) && record.getRef().length() == 1)
return true;
return false;
}
--
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