From 44a930fc301597480cb62c649b21ef3e45ec1ca9 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 29 Mar 2012 16:21:25 +0100
Subject: [PATCH] cram support

---
 .../artemis/components/alignment/CRAMReferenceSequenceFile.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java b/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java
index 2b9e5741e..ae2fb2d72 100644
--- a/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java
+++ b/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java
@@ -74,7 +74,7 @@ import uk.ac.sanger.artemis.util.OutOfRangeException;
     {
       try
       {
-        //if(bamView.isConcatSequences())
+        if(bamView.isConcatSequences())
         {
           int offset = bamView.getSequenceOffset(contig);
           start += offset;
-- 
GitLab