From 48c66abbde928f53a0ff74f183371e613de16063 Mon Sep 17 00:00:00 2001
From: Ben Taylor <ben.taylor@sanger.ac.uk>
Date: Thu, 11 Jun 2015 16:36:16 +0100
Subject: [PATCH] Move dependencies to ${HOME}/dependencies

ant builds copy everything in the pwd into ant_build and then try to
build all of the java files copied, including those of the dependencies
which are built separately.  This does not end well.
---
 .travis.yml             | 2 +-
 install_dependencies.sh | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index 91a4f6fb7..1a9e65665 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -6,7 +6,7 @@ jdk:
 sudo: false
 cache:
   directories:
-  - "build"
+  - "${HOME}/dependencies"
 before_install:
   - "export CASHER_TIME_OUT=300"
   - "export DISPLAY=:99.0"
diff --git a/install_dependencies.sh b/install_dependencies.sh
index 5c6b512ab..2e6eb18c1 100644
--- a/install_dependencies.sh
+++ b/install_dependencies.sh
@@ -10,10 +10,10 @@ EMBOSS_VERSION="6.6.0"
 EMBOSS_DOWNLOAD_URL="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EMBOSS_VERSION}.tar.gz"
 
 # Make an install location
-if [ ! -d 'build' ]; then
-  mkdir build
+if [ ! -d "${HOME}/dependencies" ]; then
+  mkdir ${HOME}/dependencies
 fi
-cd build
+cd ${HOME}/dependencies
 build_dir=$(pwd)
 
 # DOWNLOAD ALL THE THINGS
-- 
GitLab