From 4aca2a071e867e6f0af367b41ef8ece3d55d4a25 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 6 Feb 2009 11:34:51 +0000
Subject: [PATCH] add getGeneNameList
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9758 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../genebuilder/ortholog/MatchPanel.java | 19 ++++++++++++++++++-
1 file changed, 18 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel.java b/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel.java
index 71f22c576..0b5390bb0 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel.java
@@ -17,7 +17,7 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel.java,v 1.26 2008-07-31 16:14:15 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel.java,v 1.27 2009-02-06 11:34:51 tjc Exp $
*/
package uk.ac.sanger.artemis.components.genebuilder.ortholog;
@@ -29,6 +29,7 @@ import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.util.Collection;
import java.util.Iterator;
+import java.util.List;
import java.util.Vector;
import javax.swing.Box;
@@ -577,6 +578,22 @@ public class MatchPanel extends JPanel
return matchQualifiers;
}
+ public List getGeneNameList()
+ {
+ if(orthoparaLogTable == null || orthoparaLogTable.getTable().getRowCount()<1)
+ return null;
+
+ int columnIndex = orthoparaLogTable.getColumnIndex(orthoparaLogTable.GENE_COL);
+ List geneNames = new Vector(orthoparaLogTable.getTable().getRowCount());
+ for(int row=0; row<orthoparaLogTable.getTable().getRowCount(); row++)
+ {
+ String name[] =
+ ((String)orthoparaLogTable.getTable().getValueAt(row, columnIndex)).split(":");
+ geneNames.add(name[name.length-1]);
+ }
+ return geneNames;
+ }
+
public static String getDescription()
{
return "Ortholog/Paralog/Similarity";
--
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