From 4be3f51d5e208b31f49ddc289440a4926d9ab681 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 24 Jan 2008 15:45:37 +0000
Subject: [PATCH] updates for writing embl from database
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@6978 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
index d3032d3d9..dcd7a10b7 100644
--- a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
+++ b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java,v 1.5 2008-01-03 11:18:05 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java,v 1.6 2008-01-24 15:45:37 tjc Exp $
*/
package uk.ac.sanger.artemis.io;
@@ -36,7 +36,7 @@ import java.io.IOException;
* entry.
*
* @author Kim Rutherford
- * @version $Id: PublicDBDocumentEntry.java,v 1.5 2008-01-03 11:18:05 tjc Exp $
+ * @version $Id: PublicDBDocumentEntry.java,v 1.6 2008-01-24 15:45:37 tjc Exp $
**/
public class PublicDBDocumentEntry extends SimpleDocumentEntry
@@ -146,6 +146,8 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry
Key key = feature.getKey();
QualifierVector qualifiers = feature.getQualifiers().copy();
+ if(key.getKeyString().equals("transcript"))
+ key = new Key("mRNA");
if(key.getKeyString().equals("mRNA"))
{
// add protein qualifiers to transcript
--
GitLab