From 4e9118d616f70a98efc4148ac5ba1eb771a18d4b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E2=80=9Ckpepper=E2=80=9D?= <kp11@sanger.ac.uk>
Date: Mon, 5 Feb 2018 16:42:46 +0000
Subject: [PATCH] Fixed RT ticket 467433 - Genbank files with a DBSOURCE field
failed to load
---
ChangeLog | 2 ++
uk/ac/sanger/artemis/io/LineGroup.java | 1 +
2 files changed, 3 insertions(+)
diff --git a/ChangeLog b/ChangeLog
index 1682e03d5..e3c83d5f3 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -38,6 +38,8 @@ Version 17
Added Bioconda recipe. RT ticket #341139 .
+ Fixed RT ticket #467433 - Genbank DBSOURCE field was not recognised by Artemis. DBLINK was already added.
+
KNOWN ISSUES:
1) Java JDKs 1.8.0_131 and above have a Swing bug related to overlaying of modal dialogs for Mac OS X: https://bugs.openjdk.java.net/browse/JDK-8179335
2) There is a current bug in htsjdk whereby calls to the queryMate functionality can throw an exception on reads with secondaries and/or supplementals.
diff --git a/uk/ac/sanger/artemis/io/LineGroup.java b/uk/ac/sanger/artemis/io/LineGroup.java
index d66d685d8..700f17bb7 100644
--- a/uk/ac/sanger/artemis/io/LineGroup.java
+++ b/uk/ac/sanger/artemis/io/LineGroup.java
@@ -152,6 +152,7 @@ abstract class LineGroup
genbank_hash.put ("SEGMENT","SEGMENT");
genbank_hash.put ("PRIMARY","PRIMARY");
genbank_hash.put ("DBLINK","DBLINK");
+ genbank_hash.put ("DBSOURCE","DBSOURCE");
genbank_hash.put ("CONTIG","CONTIG");
}
--
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