From 4f5473a628dc8c08200948af25d25390aae2bcd3 Mon Sep 17 00:00:00 2001 From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04> Date: Fri, 5 Jun 2009 15:15:55 +0000 Subject: [PATCH] new SO terms git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10993 ee4ac58c-ac51-4696-9907-e4b3aa274f04 --- etc/feature_keys_gff | 2 +- etc/qualifier_types_gff | 3 +++ 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/etc/feature_keys_gff b/etc/feature_keys_gff index b535ad886..6167ff0cd 100644 --- a/etc/feature_keys_gff +++ b/etc/feature_keys_gff @@ -11,7 +11,7 @@ region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ont #chromosome ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified note comment description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score gene ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private #CDS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified codon_start description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score results note comment job -polypeptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain topology localization gff_source gff_seqname score mass isoelectric charge source private signal_peptide membrane_structure cytoplasm_location transmembrane non_cytoplasm_location GPI_anchor_cleavage_site comment curation +polypeptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain topology localization gff_source gff_seqname score mass isoelectric charge source private signal_peptide membrane_structure cytoplasmic_polypeptide_region non_cytoplasmic_polypeptide_region transmembrane_polypeptide_region cytoplasm_location transmembrane non_cytoplasm_location GPI_anchor_cleavage_site comment curation pseudogene ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private pseudogenic_exon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private pseudogenic_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score product diff --git a/etc/qualifier_types_gff b/etc/qualifier_types_gff index 825a01736..5b39a3463 100644 --- a/etc/qualifier_types_gff +++ b/etc/qualifier_types_gff @@ -64,6 +64,7 @@ cons_splice yes (::) 5'site 3'site country no "text" cultivar no "text" cytoplasm_location no "text" +cytoplasmic_polypeptide_region no "text" db_xref no "text" dev_stage no "text" direction yes list LEFT RIGHT BOTH @@ -93,6 +94,7 @@ membrane_structure no "text" mod_base no modbase mol_type no "text" non_cytoplasm_location no "text" +non_cytoplasmic_polypeptide_region no "text" note no "text" number yes number 1 99999999 operon no "text" @@ -135,4 +137,5 @@ tissue_type no "text" transgenic no "text" translation no "text" transmembrane no "text" +transmembrane_polypeptide_region no "text" DNA_transposon no "text" \ No newline at end of file -- GitLab