diff --git a/docs/menus.sgml b/docs/menus.sgml index 815a44f32b2a80d5d2c11912ab52588d00defa7d..5ed10a74d0de33904312bf581efa09b9afbee6ff 100644 --- a/docs/menus.sgml +++ b/docs/menus.sgml @@ -1545,7 +1545,7 @@ GUG 8.3( 12422) GCG 5.3( 8011) GAG 21.3( 31979) GGG 4.3( 6497) &prog; is able to display some types of user data in a graph that looks like the GC content graph (see <XREF LINKEND="GRAPHMENU-GC-CONTENT">). This menu item will prompt the user for the name of a data file which should contain one -of four possible graph file formats: +of the following possible graph file formats: </PARA> <ORDEREDLIST ID="GRAPH-FORMAT"> @@ -1635,6 +1635,17 @@ fixedStep chrom=chr19 start=7401 step=300 span=200 100 </SYNOPSIS> </LISTITEM> + <LISTITEM ID="GRAPH-FORMAT-5"> + <PARA> + Blast tabular format. The blastall command must be run with the -m 8 flag which + generates one line of information per HSP. Alternatively the MSPcrunch file format + can be read in as a graph file format. &prog; will prompt the user to determine + whether it uses the query or subject coordinates to plot the graph. + </PARA> +<SYNOPSIS> +</SYNOPSIS> + </LISTITEM> + </ORDEREDLIST> <PARA>