From 50459ebdbcf939dd2dd51503717c455a11e1c208 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Tue, 21 Jul 2009 08:56:06 +0000
Subject: [PATCH] docs for user graph format
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11390 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
docs/menus.sgml | 13 ++++++++++++-
1 file changed, 12 insertions(+), 1 deletion(-)
diff --git a/docs/menus.sgml b/docs/menus.sgml
index 815a44f32..5ed10a74d 100644
--- a/docs/menus.sgml
+++ b/docs/menus.sgml
@@ -1545,7 +1545,7 @@ GUG 8.3( 12422) GCG 5.3( 8011) GAG 21.3( 31979) GGG 4.3( 6497)
&prog; is able to display some types of user data in a graph that looks like
the GC content graph (see <XREF LINKEND="GRAPHMENU-GC-CONTENT">). This menu
item will prompt the user for the name of a data file which should contain one
-of four possible graph file formats:
+of the following possible graph file formats:
</PARA>
<ORDEREDLIST ID="GRAPH-FORMAT">
@@ -1635,6 +1635,17 @@ fixedStep chrom=chr19 start=7401 step=300 span=200
100
</SYNOPSIS>
</LISTITEM>
+ <LISTITEM ID="GRAPH-FORMAT-5">
+ <PARA>
+ Blast tabular format. The blastall command must be run with the -m 8 flag which
+ generates one line of information per HSP. Alternatively the MSPcrunch file format
+ can be read in as a graph file format. &prog; will prompt the user to determine
+ whether it uses the query or subject coordinates to plot the graph.
+ </PARA>
+<SYNOPSIS>
+</SYNOPSIS>
+ </LISTITEM>
+
</ORDEREDLIST>
<PARA>
--
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