diff --git a/uk/ac/sanger/artemis/editor/DataCollectionPane.java b/uk/ac/sanger/artemis/editor/DataCollectionPane.java
index 727999ab6cafb358359ced347b7b6acece9523f4..fcfbf631858878798566dd5faeb190ac5e35995e 100644
--- a/uk/ac/sanger/artemis/editor/DataCollectionPane.java
+++ b/uk/ac/sanger/artemis/editor/DataCollectionPane.java
@@ -931,7 +931,7 @@ public class DataCollectionPane extends JScrollPane
   * @param goHash	Hashtable of GO id's and description.
   *
   */
-  public void getGoHash(String filename, Hashtable goHash)
+  protected void getGoHash(String filename, Hashtable goHash)
   {
     try
     {
diff --git a/uk/ac/sanger/artemis/editor/FastaTextPane.java b/uk/ac/sanger/artemis/editor/FastaTextPane.java
index b4db2cbab5b13d38468edf837094ca14802c5d07..cf4ab20f6f4255529154e8d654f2877f4dee4b1a 100644
--- a/uk/ac/sanger/artemis/editor/FastaTextPane.java
+++ b/uk/ac/sanger/artemis/editor/FastaTextPane.java
@@ -123,12 +123,12 @@ public class FastaTextPane extends JScrollPane
     return format;
   }
 
-  protected void setTextAreaFont(Font f)
+  private void setTextAreaFont(Font f)
   {
     textArea.setFont(f);
   }
   
-  protected InputStream getInputStream()
+  private InputStream getInputStream()
             throws IOException
   {
     FileInputStream inStream = new FileInputStream(dataFile);
@@ -144,7 +144,7 @@ public class FastaTextPane extends JScrollPane
   * BLASTP are supported.
   *
   */
-  protected String getResultsFormat()
+  private String getResultsFormat()
   {
     File fn = dataFile;
 
@@ -188,7 +188,7 @@ public class FastaTextPane extends JScrollPane
   }
 
 
-  protected StringBuffer readBLASTPFile(String format)
+  private StringBuffer readBLASTPFile(final String format)
   {
     //File fn = dataFile;
     StringBuffer sbuff = new StringBuffer();
@@ -387,7 +387,7 @@ public class FastaTextPane extends JScrollPane
   }
 
 
-  protected StringBuffer readFASTAFile(String format)
+  private StringBuffer readFASTAFile(final String format)
   {
     //File fn = dataFile;
     StringBuffer sbuff = new StringBuffer();
@@ -931,7 +931,7 @@ public class FastaTextPane extends JScrollPane
     return null;
   }
   
-  protected static String insertNewline(String s1, String s2)
+  protected static String insertNewline(String s1, final String s2)
   {
     int index = 0;
     while((index = s1.indexOf(s2, index)) > -1)
@@ -1016,7 +1016,7 @@ public class FastaTextPane extends JScrollPane
     return res;
   }
 
-  public void show(Object obj)
+  protected void show(Object obj)
   {
     if(obj instanceof HitInfo)
     {