diff --git a/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java b/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java index d736956ec269728f1ecef7c832dd6c34caab0c89..ac0a3b144a9eaa75f5ddfa111f7032635efe1b89 100644 --- a/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java +++ b/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java @@ -72,9 +72,6 @@ import uk.ac.sanger.artemis.components.database.DatabaseEntrySource; /** * Chado data access example code. This searches for features by their * uniquename and returns their properties and attributes. - * - * @author tjc - * */ public class GeneEdit { @@ -113,7 +110,22 @@ public class GeneEdit + sqlExp.getMessage(), "SQL Error", JOptionPane.ERROR_MESSAGE); sqlExp.printStackTrace(); } - + } + + public GeneEdit(final String geneName) + { + DatabaseEntrySource entry_source = new DatabaseEntrySource(); + + boolean promptUser = true; + if(System.getProperty("read_only") != null) + promptUser = false; + entry_source.setLocation(promptUser); + final String location = entry_source.getLocation(); + pfield = entry_source.getPfield(); + + if(System.getProperty("show_log") != null) + GeneSplash.showLog(); + openGeneBuilder(geneName, null, location); } /** @@ -165,20 +177,7 @@ public class GeneEdit schema_search.add(schema); } - SwingWorker entryWorker = new SwingWorker() - { - public Object construct() - { - DatabaseDocumentEntry entry = makeEntry(schema, search_gene, - location, pfield); - //entry.setReadOnly(true); - showGeneEditor(schema, search_gene, entry); - return null; - } - }; - entryWorker.start(); - - + openGeneBuilder(search_gene, schema, location); } }); xbox.add(findButt); @@ -193,6 +192,24 @@ public class GeneEdit frame.setVisible(true); } + private void openGeneBuilder(final String search_gene, + final String organism, + final String location) + { + SwingWorker entryWorker = new SwingWorker() + { + public Object construct() + { + DatabaseDocumentEntry entry = makeEntry(organism, search_gene, + location, pfield); + //entry.setReadOnly(true); + showGeneEditor(organism, search_gene, entry); + return null; + } + }; + entryWorker.start(); + } + private DatabaseDocumentEntry makeEntry(final String schema, final String uniqueName, final String location, @@ -364,6 +381,10 @@ public class GeneEdit if(value instanceof javax.swing.plaf.FontUIResource) UIManager.put(key, font_ui_resource); } - new GeneEdit(); + if(args.length == 1) + new GeneEdit(args[0]); + else + new GeneEdit(); + } }