From 51e682d98bffeefa8fcf3bbebf77ac91baef9aeb Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 18 Sep 2008 08:19:18 +0000
Subject: [PATCH] new contructor to open gene builder by supplying the gene
name
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8859 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../components/genebuilder/GeneEdit.java | 59 +++++++++++++------
1 file changed, 40 insertions(+), 19 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java b/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java
index d736956ec..ac0a3b144 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java
@@ -72,9 +72,6 @@ import uk.ac.sanger.artemis.components.database.DatabaseEntrySource;
/**
* Chado data access example code. This searches for features by their
* uniquename and returns their properties and attributes.
- *
- * @author tjc
- *
*/
public class GeneEdit
{
@@ -113,7 +110,22 @@ public class GeneEdit
+ sqlExp.getMessage(), "SQL Error", JOptionPane.ERROR_MESSAGE);
sqlExp.printStackTrace();
}
-
+ }
+
+ public GeneEdit(final String geneName)
+ {
+ DatabaseEntrySource entry_source = new DatabaseEntrySource();
+
+ boolean promptUser = true;
+ if(System.getProperty("read_only") != null)
+ promptUser = false;
+ entry_source.setLocation(promptUser);
+ final String location = entry_source.getLocation();
+ pfield = entry_source.getPfield();
+
+ if(System.getProperty("show_log") != null)
+ GeneSplash.showLog();
+ openGeneBuilder(geneName, null, location);
}
/**
@@ -165,20 +177,7 @@ public class GeneEdit
schema_search.add(schema);
}
- SwingWorker entryWorker = new SwingWorker()
- {
- public Object construct()
- {
- DatabaseDocumentEntry entry = makeEntry(schema, search_gene,
- location, pfield);
- //entry.setReadOnly(true);
- showGeneEditor(schema, search_gene, entry);
- return null;
- }
- };
- entryWorker.start();
-
-
+ openGeneBuilder(search_gene, schema, location);
}
});
xbox.add(findButt);
@@ -193,6 +192,24 @@ public class GeneEdit
frame.setVisible(true);
}
+ private void openGeneBuilder(final String search_gene,
+ final String organism,
+ final String location)
+ {
+ SwingWorker entryWorker = new SwingWorker()
+ {
+ public Object construct()
+ {
+ DatabaseDocumentEntry entry = makeEntry(organism, search_gene,
+ location, pfield);
+ //entry.setReadOnly(true);
+ showGeneEditor(organism, search_gene, entry);
+ return null;
+ }
+ };
+ entryWorker.start();
+ }
+
private DatabaseDocumentEntry makeEntry(final String schema,
final String uniqueName,
final String location,
@@ -364,6 +381,10 @@ public class GeneEdit
if(value instanceof javax.swing.plaf.FontUIResource)
UIManager.put(key, font_ui_resource);
}
- new GeneEdit();
+ if(args.length == 1)
+ new GeneEdit(args[0]);
+ else
+ new GeneEdit();
+
}
}
--
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