From 528a70f1a695b681702ee440b4232edea58e84dc Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 9 Jun 2004 10:03:14 +0000
Subject: [PATCH] java2 version
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@1637 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
etc/af063097.embl | 1903 +++++++++++++++++++++++++++++++++
etc/af063097.fasta | 561 ++++++++++
etc/af063097_v_b132222.crunch | 199 ++++
etc/b132222.embl | 1512 ++++++++++++++++++++++++++
etc/b132222.fasta | 512 +++++++++
etc/c1215.blastn.crunch | 126 +++
etc/c1215.blastn.tab | 630 +++++++++++
etc/c1215.embl | 258 +++++
etc/c1215.genbank | 277 +++++
etc/c1215.seq | 110 ++
etc/feature_keys | 72 ++
etc/options | 508 +++++++++
etc/pombe.usage | 20 +
etc/qualifier_types | 110 ++
etc/results_to_netscape | 214 ++++
etc/run_blastn | 87 ++
etc/run_blastp | 88 ++
etc/run_blastx | 87 ++
etc/run_clustalx | 41 +
etc/run_fasta | 90 ++
etc/run_fasta_orig | 90 ++
etc/run_fastx | 89 ++
etc/run_hth | 148 +++
etc/run_jalview | 51 +
etc/run_jalview.orig | 167 +++
etc/run_pepstats | 77 ++
etc/run_sigcleave | 78 ++
etc/run_smart | 95 ++
etc/run_tblastn | 88 ++
etc/run_tblastx | 87 ++
30 files changed, 8375 insertions(+)
create mode 100644 etc/af063097.embl
create mode 100644 etc/af063097.fasta
create mode 100644 etc/af063097_v_b132222.crunch
create mode 100644 etc/b132222.embl
create mode 100644 etc/b132222.fasta
create mode 100644 etc/c1215.blastn.crunch
create mode 100644 etc/c1215.blastn.tab
create mode 100644 etc/c1215.embl
create mode 100644 etc/c1215.genbank
create mode 100644 etc/c1215.seq
create mode 100644 etc/feature_keys
create mode 100644 etc/options
create mode 100644 etc/pombe.usage
create mode 100644 etc/qualifier_types
create mode 100755 etc/results_to_netscape
create mode 100755 etc/run_blastn
create mode 100755 etc/run_blastp
create mode 100755 etc/run_blastx
create mode 100755 etc/run_clustalx
create mode 100755 etc/run_fasta
create mode 100755 etc/run_fasta_orig
create mode 100644 etc/run_fastx
create mode 100755 etc/run_hth
create mode 100755 etc/run_jalview
create mode 100755 etc/run_jalview.orig
create mode 100755 etc/run_pepstats
create mode 100755 etc/run_sigcleave
create mode 100755 etc/run_smart
create mode 100755 etc/run_tblastn
create mode 100755 etc/run_tblastx
diff --git a/etc/af063097.embl b/etc/af063097.embl
new file mode 100644
index 000000000..99cf9f44a
--- /dev/null
+++ b/etc/af063097.embl
@@ -0,0 +1,1903 @@
+ID AF063097 standard; DNA; PHG; 33593 BP.
+XX
+AC AF063097; J02474; L29304; M12772; M13202; M27131; M27836; M34756; M58023;
+AC M59752; M64677; U02597; X02300; X02301; X05655; X61229; X87173; X99627;
+AC X99628; Z11483;
+XX
+SV AF063097.1
+XX
+DT 21-MAY-1998 (Rel. 55, Created)
+DT 07-JAN-1999 (Rel. 58, Last updated, Version 2)
+XX
+DE Bacteriophage P2, complete genome.
+XX
+KW .
+XX
+OS Enterobacteria phage P2
+OC Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae;
+OC P2-like Viruses.
+XX
+RN [1]
+RP 1-9, 33582-33593
+RX MEDLINE; 73220701.
+RA Murray K., Murray N.E.;
+RT "Terminal nucleotide sequences of DNA from temperate coliphages";
+RL Nature New Biol. 243(126):134-139(1973).
+XX
+RN [2]
+RP 1-26, 33568-33593
+RX MEDLINE; 77209985.
+RA Murray K., Isaksson-Forsen A.G., Challberg M., Englund P.T.;
+RT "Symmetrical nucleotide sequences in the recognition sites for the ter
+RT function of bacteriophages P2, 299 and 186";
+RL J. Mol. Biol. 112(3):471-489(1977).
+XX
+RN [3]
+RP 1-26, 33568-33593
+RX MEDLINE; 82051282.
+RA Lindqvist B.H.;
+RT "Recombination between satellite phage P4 and its helper P2. I. In vivo and
+RT in vitro construction of P4: :P2 hybrid satellite phage";
+RL Gene 14(4):231-241(1981).
+XX
+RN [4]
+RP 2929-3589
+RX MEDLINE; 83268689.
+RA Christie G.E., Calendar R.;
+RT "Bacteriophage P2 late promoters. Transcription initiation sites for two
+RT late mRNAs";
+RL J. Mol. Biol. 167(4):773-790(1983).
+XX
+RN [5]
+RP 25456-25995
+RX MEDLINE; 84248044.
+RA Ljungquist E., Kockum K., Bertani E.L.;
+RT "DNA sequence of the repressor gene and operator region of bacteriophage
+RT P2";
+RL Proc. Natl. Acad. Sci. U.S.A. 81:3988-3992(1984).
+XX
+RN [6]
+RP 10188-10518, 17510-17996
+RX MEDLINE; 85160858.
+RA Christie G.E., Calender R.;
+RT "Bacteriophage P2 late promoters - comparison of the four late promoter
+RT sequences";
+RL J. Mol. Biol. 181:373-382(1985).
+XX
+RN [7]
+RP 23909-24339
+RX MEDLINE; 86281704.
+RA Birkeland N.K., Lindquist B.H.;
+RT "Coliphage P2 late control gene ogr. DNA sequence and product
+RT identification";
+RL J. Mol. Biol. 188(3):487-490(1986).
+XX
+RN [8]
+RP 23889-24333
+RX MEDLINE; 86205872.
+RA Christie G.E., Haggard-Ljungquist E., Feiwell R., Calendar R.;
+RT "Regulation of bacteriophage P2 late-gene expression: the ogr gene";
+RL Proc. Natl. Acad. Sci. U.S.A. 83(10):3238-3242(1986).
+XX
+RN [9]
+RP 25849-27048
+RX MEDLINE; 87286423.
+RA Haggard-Ljungquist E., Kockum K., Bertani L.E.;
+RT "DNA sequences of bacteriophage P2 early genes cox and B and their
+RT regulatory sites";
+RL Mol. Gen. Genet. 208(1-2):52-56(1987).
+XX
+RN [10]
+RP 25849-27048
+RX MEDLINE; 88082694.
+RA Saha S., Haggard-Ljungquist E., Nordstrom K.;
+RT "The cox protein of bacteriophage P2 inhibits the formation of the
+RT repressor protein and autoregulates the early operon";
+RL EMBO J. 6(10):3191-3199(1987).
+XX
+RN [11]
+RP 24252-25595
+RX MEDLINE; 90006769.
+RA Yu A., Bertani L.E., Haggard-Ljungquist E.;
+RT "Control of prophage integration and excision in bacteriophage P2:
+RT nucleotide sequences of the int gene and att sites";
+RL Gene 80(1):1-11(1989).
+XX
+RN [12]
+RP 31590-33593
+RX MEDLINE; 90152373.
+RA Haggard-Ljungquist E., Barreiro V., Calendar R., Kurnit D.M., Cheng H.;
+RT "The P2 phage old gene: sequence, transcription and translational control";
+RL Gene 85(1):25-33(1989).
+XX
+RN [13]
+RP 1-266, 33200-33593
+RX MEDLINE; 91092507.
+RA Ziermann R., Calendar R.;
+RT "Characterization of the cos sites of bacteriophages P2 and P4";
+RL Gene 96(1):9-15(1990).
+XX
+RN [14]
+RP 17627-19373
+RX MEDLINE; 91135001.
+RA Temple L.M., Forsburg S.L., Calendar R., Christie G.E.;
+RT "Nucleotide sequence of the genes encoding the major tail sheath and tail
+RT tube proteins of bacteriophage P2";
+RL Virology 181(1):353-358(1991).
+XX
+RN [15]
+RP 4050-5178
+RX MEDLINE; 91220668.
+RA Six E.W., Sunshine M.G., Williams J., Haggard-Ljungquist E.,
+RA Lindqvist B.H.;
+RT "Morphopoietic switch mutations of bacteriophage P2";
+RL Virology 182(1):34-46(1991).
+XX
+RN [16]
+RP 1-6551
+RX MEDLINE; 92115571.
+RA Linderoth N.A., Ziermann R., Haggard-Ljungquist E., Christie G.E.,
+RA Calendar R.;
+RT "Nucleotide sequence of the DNA packaging and capsid synthesis genes of
+RT bacteriophage P2";
+RL Nucleic Acids Res. 19(25):7207-7214(1991).
+XX
+RN [17]
+RP 12173-15684
+RX MEDLINE; 92165720.
+RA Haggard-Ljungquist E., Halling C., Calendar R.;
+RT "DNA sequence of two tail genes of bacteriophage P2: Further evidence for
+RT horizontal transfer of tail fiber genes among unrelated bacteriophages";
+RL J. Bacteriol. 174:1462-1477(1992).
+XX
+RN [18]
+RP 26923-30721
+RX MEDLINE; 93287108.
+RA Liu Y., Saha S., Haggard-Ljungquist E.;
+RT "Studies of bacteriophage P2 DNA replication. The DNA sequence of the
+RT cis-acting gene A and ori region and construction of a P2 mini-chromosome";
+RL J. Mol. Biol. 231(2):361-374(1993).
+XX
+RN [19]
+RP 6288-8381
+RX MEDLINE; 94327465.
+RA Ziermann R., Bartlett B., Calendar R., Christie G.E.;
+RT "Functions involved in bacteriophage P2-induced host cell lysis and
+RT identification of a new tail gene";
+RL J. Bacteriol. 176:4974-4984(1994).
+XX
+RN [20]
+RP 8376-10381
+RX MEDLINE; 94233699.
+RA Linderoth N.A., Julien B., Flick K.E., Calendar R., Christie G.E.;
+RT "Molecular cloning and characterization of bacteriophage P2 genes R and S
+RT involved in tail completion";
+RL Virology 200:347-359(1994).
+XX
+RN [21]
+RP 10276-12739
+RX MEDLINE; 96036485.
+RA Haggard-Liungquist E., Jacobsen E., Rishovd S., Six W.S., Nilssen O.,
+RA Sunshine M.G., Lindqvist B.H., Kim K.J., Barreiro V., Koonin E.V.,
+RA Calendar R.;
+RT "Bacteriophage P2: genes involved in baseplate assembly";
+RL Virology 213(1):109-121(1995).
+XX
+RN [22]
+RP 15627-17626, 30643-31622
+RA Calendar R., Yu S., Myung H., Barreiro V., Odegrip R., Bertani L.E.,
+RA Carlson K., Davenport L., Mosig G., Christie G.E., Haggard-Ljungquist E.;
+RT "The lysogenic conversion genes of coliphage P2 have unusually high AT
+RT content";
+RL (in) Syvanen M., Kado C. (eds.);
+RL HORIZONTAL GENE TRANSFER:1-1;
+RL Chapman and Hall, London (1998)
+XX
+RN [23]
+RP 19374-23954
+RA Christie G.E., Temple L.M., Bartlett B.A., Goodwin T.S.;
+RT "Bacteriophage P2 tail assembly genes: Gene organization and a programmed
+RT translational frameshift parallel those of bacteriophage lambda";
+RL Unpublished.
+XX
+RN [24]
+RP 1-33593
+RA Christie G.E., Haggard-Ljungquist E., Calendar R.;
+RT "The complete genome of bacteriophage P2";
+RL Unpublished.
+XX
+RN [25]
+RP 24351-25595
+RA Haggard-Ljungquist E.;
+RT ;
+RL Submitted (15-SEP-1989) to the EMBL/GenBank/DDBJ databases.
+RL Department of Microbial Genetics, Karolinska Institutet, Stockholm, Sweden
+XX
+RN [26]
+RP 1-6551
+RA Linderoth N.A.;
+RT ;
+RL Submitted (13-AUG-1991) to the EMBL/GenBank/DDBJ databases.
+RL Dept of Mol and Cell Biology, Div of Biochemistry and Molecular Biology,
+RL University of California, 401 Barker Hall, Berkeley, CA 94720, USA
+XX
+RN [27]
+RP 26923-30721
+RA Haggard-Ljungquist E.;
+RT ;
+RL Submitted (12-NOV-1991) to the EMBL/GenBank/DDBJ databases.
+RL Department of Microbial Genetics, Karolinska Institutet, S-10401,
+RL Stockholm, Sweden
+XX
+RN [28]
+RP 8376-10381
+RA Linderoth N.A.;
+RT ;
+RL Submitted (18-OCT-1993) to the EMBL/GenBank/DDBJ databases.
+RL Nora A. Linderoth, Laboratory of Genetics, The Rockefeller University, 1230
+RL York Avenue, New York, NY 10021, USA
+XX
+RN [29]
+RP 10276-12739
+RA Haggard E.B.;
+RT ;
+RL Submitted (12-MAY-1995) to the EMBL/GenBank/DDBJ databases.
+RL Department of Genetics, Stockholm University, S-10691, Stockholm, Sweden
+XX
+RN [30]
+RP 15627-17626, 30643-31622
+RA Haggard-Ljungquist E.;
+RT ;
+RL Submitted (30-JUL-1996) to the EMBL/GenBank/DDBJ databases.
+RL Department of Genetics, Stockholm University, S-106 91, Stockholm, Sweden
+XX
+RN [31]
+RP 17510-23954
+RA Christie G.E.;
+RT ;
+RL Submitted (21-NOV-1996) to the EMBL/GenBank/DDBJ databases.
+RL Department of Microbiology and Immunology, Virginia Commonwealth
+RL University, Box 980678, Richmond, VA 23298-0678, USA
+XX
+RN [32]
+RP 1-33593
+RA Christie G.E.;
+RT ;
+RL Submitted (05-MAY-1998) to the EMBL/GenBank/DDBJ databases.
+RL Department of Microbiology and Immunology, Virginia Commonwealth
+RL University, Richmond, VA 23298-0678, USA
+XX
+DR SPTREMBL; O64312; O64312.
+DR SPTREMBL; O64313; O64313.
+DR SPTREMBL; O64314; O64314.
+DR SPTREMBL; O64315; O64315.
+DR SPTREMBL; P79669; P79669.
+DR SPTREMBL; P79670; P79670.
+DR SPTREMBL; Q38498; Q38498.
+DR SWISS-PROT; P04132; RPC_BPP2.
+DR SWISS-PROT; P07695; VCOX_BPP2.
+DR SWISS-PROT; P07696; VPB_BPP2.
+DR SWISS-PROT; P08762; VOGR_BPP2.
+DR SWISS-PROT; P10312; VPD_BPP2.
+DR SWISS-PROT; P13520; VOLD_BPP2.
+DR SWISS-PROT; P22501; VPF1_BPP2.
+DR SWISS-PROT; P22502; VPF2_BPP2.
+DR SWISS-PROT; P25475; VPL_BPP2.
+DR SWISS-PROT; P25476; VPM_BPP2.
+DR SWISS-PROT; P25477; VPN_BPP2.
+DR SWISS-PROT; P25478; VPO_BPP2.
+DR SWISS-PROT; P25479; VPP_BPP2.
+DR SWISS-PROT; P25480; VPQ_BPP2.
+DR SWISS-PROT; P26699; TFA_BPP2.
+DR SWISS-PROT; P26700; VPH_BPP2.
+DR SWISS-PROT; P26701; VPI_BPP2.
+DR SWISS-PROT; P31340; VPV_BPP2.
+DR SWISS-PROT; P36932; VINT_BPP2.
+DR SWISS-PROT; P36933; VPR_BPP2.
+DR SWISS-PROT; P36934; VPS_BPP2.
+DR SWISS-PROT; P36935; YSV_BPP2.
+DR SWISS-PROT; P51767; VPJ_BPP2.
+DR SWISS-PROT; P51768; VPW_BPP2.
+DR SWISS-PROT; P51769; LYSA_BPP2.
+DR SWISS-PROT; P51770; LYSB_BPP2.
+DR SWISS-PROT; P51771; LYCV_BPP2.
+DR SWISS-PROT; P51772; VPX_BPP2.
+DR SWISS-PROT; P51773; HOLI_BPP2.
+DR SWISS-PROT; Q06419; VPA_BPP2.
+DR SWISS-PROT; Q06422; YO80_BPP2.
+DR SWISS-PROT; Q06423; YO81_BPP2.
+DR SWISS-PROT; Q06424; YO82_BPP2.
+DR SWISS-PROT; Q06425; YO83_BPP2.
+DR SWISS-PROT; Q06426; YO91_BPP2.
+XX
+CC On May 20, 1998 this sequence version replaced gi:506838 gi:15821
+CC gi:1806573 gi:215666 gi:506836 gi:508561 gi:1061043 gi:215669
+CC gi:1769975 gi:494974 gi:215664 gi:15620 gi:393451 gi:1769977
+CC gi:215681 gi:215675 gi:215676 gi:15141 gi:414530.
+XX
+FH Key Location/Qualifiers
+FH
+FT source 1..33593
+FT /db_xref="taxon:10679"
+FT /organism="Enterobacteria phage P2"
+FT /lab_host="Escherichia coli"
+FT misc_feature 1..19
+FT /note="cosL; left cohesive end"
+FT terminator complement(160..181)
+FT /note="tQ; putative rho-independent terminator for P
+FT operon"
+FT CDS complement(187..1221)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P25480"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="Q"
+FT /function="presumed portal protein"
+FT /product="gpQ"
+FT /protein_id="AAD03268.1"
+FT /translation="MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVE
+FT CISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLD
+FT FLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSVFHL
+FT LEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE
+FT MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH
+FT RIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLD
+FT TDND"
+FT variation complement(653)
+FT /note="Qam34 mutation"
+FT /replace="t"
+FT /gene="Q"
+FT CDS complement(1221..2993)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P25479"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="P"
+FT /function="terminase; DNA-dependent ATPase"
+FT /product="gpP"
+FT /protein_id="AAD03269.1"
+FT /translation="MTITTDTTLLHDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSWK
+FT QRDGWDSVAPISRVEMSLEARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTG
+FT NEADLNPNVANRNKGGRRKPKKNFFSDEAIEKLEQIFFEQSFDYQLHWYRAGLEHRIRD
+FT ILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFARLVDVDLTGD
+FT PIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTY
+FT FSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIED
+FT ALKGGCTLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYA
+FT PFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAES
+FT IRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYPAARDIRYTPEMKTAMVLKAKDVIRRG
+FT CLEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPLTA
+FT GISTPLTSTILEFY"
+FT variation complement(2210)
+FT /note="Pam24 and Pam137 mutations"
+FT /replace="a"
+FT /gene="P"
+FT variation complement(2948)
+FT /note="Pam253 mutation"
+FT /replace="a"
+FT /gene="P"
+FT misc_feature complement(3016)
+FT /note="transcription start site for P operon; encodes P,Q"
+FT /gene="P"
+FT misc_feature 3057..3087
+FT /evidence=EXPERIMENTAL
+FT /note="activator binding site; pO, pP promoters"
+FT misc_feature 3127
+FT /evidence=EXPERIMENTAL
+FT /note="transcription start site for O operon; encodes O, N,
+FT M, L, X, Y, K, lysA, lysB, R, S"
+FT CDS 3167..4021
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P25478"
+FT /transl_table=11
+FT /gene="O"
+FT /function="presumed capsid scaffolding protein"
+FT /product="gpO"
+FT /protein_id="AAD03270.1"
+FT /translation="MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRIN
+FT LEHLRGILPDGIFKRYGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKV
+FT YTSMEIQPNFANTGKCYLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISV
+FT ATPVELEFEDLPETVFTALTEKVKSIFGRKQASDDARLNDVHEAVTAVAEHVQEKLSAT
+FT EQRLAEMETAFSALKQEVTDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALM
+FT TNC"
+FT variation 3206
+FT /note="Oam71 mutation"
+FT /replace="t"
+FT /gene="O"
+FT variation 3411
+FT /note="Oam7 mutation"
+FT /replace="a"
+FT /gene="O"
+FT variation 3878
+FT /note="Oam279 mutation"
+FT /replace="t"
+FT /gene="O"
+FT CDS 4080..5153
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P25477"
+FT /transl_table=11
+FT /gene="N"
+FT /function="major capsid precursor"
+FT /product="gpN"
+FT /protein_id="AAD03271.1"
+FT /translation="MRQETRFKFNAYLSRVAELNGIDAGDVSKKFTVEPSVTQTLMNTM
+FT QESSDFLTRINIVPVSEMKGEKIGIGVTGSIASTTDTAGGTERQPKDFSKLASNKYECD
+FT QINFDFYIRYKTLDLWARYQDFQLRIRNAIIKRQSLDFIMAGFNGVKRAETSDRSSNPM
+FT LQDVAVGWLQKYRNEAPARVMSKVTDEEGRTTSEVIRVGKGGDYASLDALVMDATNNLI
+FT EPWYQEDPDLVVIVGRQLLADKYFPIVNKEQDNSEMLAADVIISQKRIGNLPAVRVPYF
+FT PADAMLITKLENLSIYYMDDSHRRVIEENPKLDRVENYESMNIDYVVEDYAAGCLVEKI
+FT KVGDFSTPAKATAEPGA"
+FT variation 4349..4350
+FT /note="Nam209 mutation"
+FT /replace="at"
+FT /gene="N"
+FT variation 4630
+FT /note="sir3 mutation; defective for choice of small capsids
+FT by satellite phage P4"
+FT /replace="c"
+FT /gene="N"
+FT variation 4695
+FT /note="sir5 mutation; defective for choice of small capsids
+FT by satellite phage P4"
+FT /replace="t"
+FT /gene="N"
+FT variation 4695..4697
+FT /note="sir9 mutation; defective for choice of small capsids
+FT by satellite phage P4"
+FT /replace=""
+FT /gene="N"
+FT variation 4699
+FT /note="sir2, sir6 and sir8 mutations; defective for choice
+FT of small capsids by satellite phage P4"
+FT /replace="t"
+FT /gene="N"
+FT variation 4740
+FT /note="sir1 mutation; defective for choice of small capsids
+FT by satellite phage P4"
+FT /replace="g"
+FT /gene="N"
+FT variation 4741
+FT /note="sir4 mutation; defective for choice of small capsids
+FT by satellite phage P4"
+FT /replace="a"
+FT /gene="N"
+FT CDS 5157..5900
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P25476"
+FT /transl_table=11
+FT /gene="M"
+FT /function="terminase"
+FT /product="gpM"
+FT /protein_id="AAD03272.1"
+FT /translation="MTSPAQRHMMRVSAAMTAQREAAPLRHATVYEQMLVKLAADQRTL
+FT KAIYSKELKAAKKRELLPFWLPWVNGVLELGKGAQDDILMTVMLWRLDTGDIAGALEIA
+FT RYALKYGLTMPGKHRRTPPYMFTEEVALAAMRAHAAGESVDTRLLTETLELTATADMPD
+FT EVRAKLHKITGLFLRDGGDAAGALAHLQRATQLDCQAGVKKEIERLERELKPKPEPQPK
+FT AATRAPRKTRSVTPAKRGRPKKKAS"
+FT variation 5361
+FT /note="Mts52 mutation"
+FT /replace="a"
+FT /gene="M"
+FT variation 5751
+FT /note="Mam32 mutation"
+FT /replace="t"
+FT /gene="M"
+FT CDS 6000..6509
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P25475"
+FT /transl_table=11
+FT /gene="L"
+FT /function="capsid completion protein"
+FT /product="gpL"
+FT /protein_id="AAD03273.1"
+FT /translation="MMTLIIPRKEAPVSGEGTVVIPQPAGDEPVIKNTFFFPDIDPKRV
+FT RERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTRLADVPADDIDGESIK
+FT VFYYERAVCAMATASLYERYRGVDASAKGDKKADSIDSTIDELWRDMRWAVARIQGKPR
+FT CIVSQI"
+FT variation 6024
+FT /note="Lam79 mutation"
+FT /replace="t"
+FT /gene="L"
+FT variation 6240
+FT /note="Lam9 mutation"
+FT /replace="t"
+FT /gene="L"
+FT CDS 6509..6712
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P51772"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="X"
+FT /function="essential tail gene"
+FT /product="gpX"
+FT /protein_id="AAD03274.1"
+FT /translation="MKTFALQGDTLDAICVRYYGRTEGVVETVLAANPGLAELGAVLPH
+FT GTAVELPDVQTAPVAETVNLWE"
+FT variation 6562
+FT /note="Xam95 mutation"
+FT /replace="g"
+FT /gene="X"
+FT CDS 6716..6997
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P51773"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="Y"
+FT /function="holin; essential for host cell cell lysis"
+FT /product="gpY"
+FT /protein_id="AAD03275.1"
+FT /translation="MTAEEKSVLSLFMIGVLIVVGKVLAGGEPITPRLFIGRMLLGGFV
+FT SMVAGVVLVQFPDLSLPAVCGIGSMLGIAGYQVIEIAIQRRFKGRGKQ"
+FT variation 6852
+FT /note="Yam94 mutation"
+FT /replace="a"
+FT /gene="Y"
+FT CDS 6997..7494
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P51771"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="K"
+FT /function="endolysin; essential for host cell lysis"
+FT /product="gpK"
+FT /protein_id="AAD03276.1"
+FT /translation="MPVINTHQNIAAFLDMLAVSEGTANHPLTKNRGYDVIVTGLDGKP
+FT EIFTDYSDHPFAHGRPAKVFNRRGEKSTASGRYQQLYLFWPHYRKQLALPDFSPLSQDR
+FT LAIQLIRERGALDDIRAGRIERAISRCRNIWASLPGAGYGQREHSLEKLVTVWRTAGGV
+FT PA"
+FT variation 7114
+FT /note="Kts60 mutation"
+FT /replace="a"
+FT /gene="K"
+FT variation 7126
+FT /note="Kam218 mutation"
+FT /replace="t"
+FT /gene="K"
+FT variation 7318
+FT /note="Kam12 mutation"
+FT /replace="t"
+FT /gene="K"
+FT variation 7322
+FT /note="Kam76 mutation"
+FT /replace="a"
+FT /gene="K"
+FT CDS 7509..7934
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P51769"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="lysA"
+FT /function="nonessential; affects timing of lysis"
+FT /product="LysA"
+FT /protein_id="AAD03277.1"
+FT /translation="MKKLSLSLMLNVSLALMLALSLIYPQSVAVNFVAAWAILATVICV
+FT VAGGVGVYATEYVLERYGRELPPESLAVKIVTSLFLQPVPWRRRAAALVVVVATFISLV
+FT AAGWIFTALIYLVVSLFFRLIRKACRQRLEGREPCQG"
+FT variation 7694
+FT /note="lysAam96 mutation"
+FT /replace="g"
+FT /gene="lysA"
+FT CDS 7922..8347
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P51770"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="lysB"
+FT /function="nonessential; affects timing of lysis"
+FT /product="LysB"
+FT /protein_id="AAD03278.1"
+FT /translation="MSRLMIVLVVLLSLAVAGLFLVKHKNASLRASLDRANNVASGQQT
+FT TITMLKNQLHVALTRADKNELAQVALRQELENAAKREAQREKTITRLLNENEDFRRWYG
+FT ADLPDAVRRLHQRPACTDASDCPQRMPESEPLPDAGQ"
+FT variation 8099..8100
+FT /note="lysBam97 mutation"
+FT /replace="ta"
+FT /gene="lysB"
+FT attenuator 8399..8417
+FT /note="putative transcription attenuator; O operon"
+FT CDS 8455..8922
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P36933"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="R"
+FT /function="essential tail gene; tail completion"
+FT /product="gpR"
+FT /protein_id="AAD03279.1"
+FT /translation="MLKPDSLRRALTDAVTVLKTNPDMLRIFVDNGSIASTLAASLSFE
+FT KRYTLNVIVTDFTGDFDLLIVPVLAWLRENQPDIMTTDEGQKKGFTFYADINNDSSFDI
+FT SISLMLTERTLVSEVDGALHVKNISEPPPPEPVTRPMELYINGELVSKWDE"
+FT variation 8680
+FT /note="Ram3 mutation"
+FT /replace="t"
+FT /gene="R"
+FT variation 8710
+FT /note="Ram42 mutation"
+FT /replace="t"
+FT /gene="R"
+FT variation 8857
+FT /note="Ram23 mutation"
+FT /replace="t"
+FT /gene="R"
+FT CDS 8915..9367
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P36934"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="S"
+FT /function="essential tail gene; tail completion"
+FT /product="gpS"
+FT /protein_id="AAD03280.1"
+FT /translation="MNEFKRFEDRLTGLIESLSPSGRRRLSAELAKRLRQSQQRRVMAQ
+FT KAPDGTPYAPRQQQSVRKKTGRVKRKMFAKLITSRFLHIRASPEQASMEFYGGKSPKIA
+FT SVHQFGLSEENRKDGKKIDYPARPLLGFTGEDVQMIEEIILAHLER"
+FT variation 9209
+FT /note="Sam75 mutation"
+FT /replace="t"
+FT /gene="S"
+FT variation 9213
+FT /note="Sam89 mutation"
+FT /replace="a"
+FT /gene="S"
+FT terminator 9397..9433
+FT /note="putative rho-independent terminator for O operon"
+FT CDS complement(9439..10224)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P36935"
+FT /transl_table=11
+FT /gene="orf30"
+FT /function="nonessential"
+FT /product="Orf30"
+FT /protein_id="AAD03281.1"
+FT /translation="MVSYNVTNVWGLIVFFLCSFAVLAFFSFGKSNLMRLIAHYFNFGY
+FT SDKKLKRLDREWRDIQLFKIINGINVSGIENVRMIQQGLIDGKLKTSYFFLTRIWGDIT
+FT KPPHIIKTIIVILASIFYILLACYIHNEQSVIVRDATGIPYKNMMYYVYSDKVLLSFKN
+FT KAVEFNKTYSLADCKRLQNVFIKDTLPEIACNKLLQLNEEDSEWLSQEIKDNNSHKKAL
+FT LILSLVYFTSGLVIFLSYTKFFYANKKVLEYKASNKNHS"
+FT misc_feature 10239..10266
+FT /evidence=EXPERIMENTAL
+FT /note="activator binding site; activation of pV promoter"
+FT CDS 10308..10943
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P31340"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="V"
+FT /function="baseplate assembly protein"
+FT /product="gpV"
+FT /protein_id="AAD03282.1"
+FT /translation="MNTLANIQELARALRNMIRTGIIVETDLNAGRCRVQTGGMCTDWL
+FT QWLTHRAGRSRTWWAPSVGEQVLILAVGGELDTAFVLPGIYSGDNPSPSVSADALHIRF
+FT PDGAVIEYEPETSALTVSGIKTASVTASGSVTATVPVVMVKASTRVTLDTPEVVCTNRL
+FT ITGTLEVQKGGTMRGNIEHTGGELSSNGKVLHTHKHPGDSGGTTGSPL"
+FT misc_feature 10308
+FT /evidence=EXPERIMENTAL
+FT /note="transcription start site for V operon; encodes V, W,
+FT J, I, H, G"
+FT /gene="V"
+FT variation 10329
+FT /note="Vam42, Vam203 and Vam205 mutations"
+FT /replace="t"
+FT /gene="V"
+FT variation 10498
+FT /note="Vts199 mutation"
+FT /replace="a"
+FT /gene="V"
+FT CDS 10940..11287
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P51768"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="W"
+FT /function="baseplate assembly protein"
+FT /product="gpW"
+FT /protein_id="AAD03283.1"
+FT /translation="MTARYLGMNRSDGLTVTDLEHISQSIGDILRTPVGSRVMRRDYGS
+FT LLASMIDQPQTPALELQIKVACYMAVLKWEPRVTLSSVTTARSFDGRMTVTLTGQHNDT
+FT GQPLSLTIPVS"
+FT variation 11237
+FT /note="Wam50 mutation"
+FT /replace="t"
+FT /gene="W"
+FT CDS 11292..12200
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P51767"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="J"
+FT /function="baseplate assembly protein"
+FT /product="gpJ"
+FT /protein_id="AAD03284.1"
+FT /translation="MPIIDLNQLPAPDVVEELDFESILAERKATLISLYPEDQQEAVAR
+FT TLTLESEPLVKLLEENAYRELIWRQRVNEAARAVMLACAAGNDLDVIGANYNTTRLTIT
+FT PADDSTIPPTPAVMESDTDYRLRIQQAFEGLSVAGSVGAYQYHGRSADGRVADISVTSP
+FT SPACVTISVLSRENNGVASEDLLAVVRNALNGEDVRPVADRVTVQSAAIVEYQINATLY
+FT LYPGPESEPIRAAAVKKLEAYITAQHRLGRDIRLSAIYAALHVEGVQRVELAAPLADIV
+FT LNSTQASFCTEYRVVTGGSDE"
+FT variation 11937
+FT /note="Jam31 mutation"
+FT /replace="t"
+FT /gene="J"
+FT CDS 12193..12723
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P26701"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="I"
+FT /function="baseplate assembly protein"
+FT /product="gpI"
+FT /protein_id="AAD03285.1"
+FT /translation="MSDSRLLPTGSSPLEVAAAKACAEIEKTPVSIRELWNPDTCPANL
+FT LPWLAWAFSVDRWDEKWPEATKRAVIRDAYFIHCHKGTIGAIRRVVEPLGYLINVTEWW
+FT ENSDPPGTFRLDIGVLESGITEAMYQEMERLIADAKPASRHLIGLNITRDIPGYLFAGG
+FT VAYDGDVITVYPG"
+FT variation 12235
+FT /note="Iam78 mutation"
+FT /replace="t"
+FT /gene="I"
+FT CDS 12734..14743
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P26700"
+FT /transl_table=11
+FT /gene="H"
+FT /function="probable tail fiber protein"
+FT /product="gpH"
+FT /protein_id="AAD03286.1"
+FT /translation="MSIKFRTVITTAGAAKLAAATAPGRRKVGITTMAVGDGGGKLPVP
+FT DAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLIAV
+FT ANMAESYKPALAEGSGRWQTCRMVIIVSSVASVELTIDTTTVMATQDYVDDKIAEHEQS
+FT RRHPDASLTAKGFTQLSSATNSTSETLAATPKAVKAAYDLANGKYTAQDATTARKGLVQ
+FT LSSATNSTSETLAATPKAVKTVMDETNKKAPLNSPALTGTPTTPTARQGTNNTQIANTA
+FT FVMAAIAALVDSSPDALNTLNELAAALGNDPNFATTMTNALAGKQPKDATLTALAGLAT
+FT AADRFPYFTGNDVASLATLTKVGRDILAKSTVAAVIEYLGLQETVNRAGNAVQKNGDTL
+FT SGGLTFENDSILAWIRNTDWAKIGFKNDADGDTDSYMWFETGDNGNEYFKWRSRQSTTT
+FT KDLMTLKWDALNILVNAVINGCFGVGTTNALGGSSIVLGDNDTGFKQNGDGILDVYANS
+FT QRVFRFQNGVAIAFKNIQAGDSKKFSLSSSNTSTKNITFNLWGASTRPVVAELGDEAGW
+FT HFYSQRNTDNSVIFAVNGQMQPSNWGNFDSRYVKDVRLGTRVVQLMARGGRYEKAGHTI
+FT TGLRIIGEVDGDDEAIFRPIQKYINGTWYNVAQV"
+FT variation 13994
+FT /note="Ham72 mutation"
+FT /replace="t"
+FT /gene="H"
+FT variation 14336
+FT /note="Ham59 mutation"
+FT /replace="t"
+FT /gene="H"
+FT CDS 14747..15274
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P26699"
+FT /transl_table=11
+FT /gene="G"
+FT /function="probable tail fiber assembly protein"
+FT /product="gpG"
+FT /protein_id="AAD03287.1"
+FT /translation="MQHLKNIKSGNPKTKEQYQLTKNFDVIWLWSEDGKNWYEEVKNFQ
+FT PDTIKIVYDENNIIVAITRDASTLNPEGFSVVEVPDITSNRRADDSGKWMFKDGAVVKR
+FT IYTADEQQQQAESQKAALLSEAENVIQPLERAVRLNMATDEERARLESWERYSVLVSRV
+FT DPANPEWPEMPQ"
+FT variation 14879
+FT /note="Gam1 mutation"
+FT /replace="t"
+FT /gene="G"
+FT variation 15294..17233
+FT /note="del2 deletion"
+FT /replace=""
+FT terminator 15639..15666
+FT /note="putative rho-independent terminator for V operon"
+FT CDS complement(15675..17261)
+FT /codon_start=1
+FT /db_xref="SPTREMBL:P79669"
+FT /note="cloned gene blocks growth of T5"
+FT /transl_table=11
+FT /gene="fun(Z)"
+FT /function="nonessential; lysogenic conversion; confers
+FT sensitivity to FUdR"
+FT /product="Fun(Z)"
+FT /protein_id="AAD03288.1"
+FT /translation="MIPIKDLTLGYADAENYKRRENKELLNKVFIRDNHLSRLCEPNIS
+FT FLVGEKGTGKTAYSIYLSNNNINNTLATTKYIRETEYQKFITLKSEKHLNLSDFSGIWK
+FT VILYLLISKQVLDKEGKISKLLNYSKFSSLNDAIDEYYLKAFSPEIIQALSFVQESKVA
+FT AELLHKHATLKGEERESLSFSESRFQINLFYIQKKFEEAFSQIRLSQNHILFIDGIDIR
+FT PSSIPYDDYLECIKGLAHAVWEINNDFFPSIKGGKGRMKAVLLIRPDIFESIGLQNQNA
+FT KIRDNSVFLDWRTEYVNHRSSQLFEVLDHLLRTQQDMALKKGQAWDHYFPWDSPNVHDN
+FT YNHPTSFINFLRWSYYRPRDILRMLEIIKSHASGDDGKNQFSLDDFESPSMQRDYSNYL
+FT LGEIKDHLSFYYGSEHYEIFLKFFEFLSGKDTFDYAEYLLAYKQLETHISSISTTKPKF
+FT MTTANDFLQFLFGLNVICYIETTEDNNRFIRWCFRERSYANISPKIKTGMKYQIFYGLA
+FT KSLNVGKALKK"
+FT variation complement(15784)
+FT /note="Z81su3 mutation"
+FT /replace="a"
+FT /gene="fun(Z)"
+FT variation complement(15872)
+FT /note="Z20 mutation"
+FT /replace="t"
+FT /gene="fun(Z)"
+FT variation complement(15944)
+FT /note="Z81 mutation"
+FT /replace="t"
+FT /gene="fun(Z)"
+FT variation complement(15946)
+FT /note="fun1 mutation"
+FT /replace="t"
+FT /gene="fun(Z)"
+FT variation complement(16079)
+FT /note="csZ150 mutation"
+FT /replace="t"
+FT /gene="fun(Z)"
+FT variation complement(16266)
+FT /note="fun99 mutation"
+FT /replace="t"
+FT /gene="fun(Z)"
+FT variation 16267..17299
+FT /note="del5 deletion"
+FT /replace=""
+FT variation complement(16638)
+FT /note="csZ150 mutation"
+FT /replace="a"
+FT /gene="fun(Z)"
+FT misc_feature 17555..17583
+FT /evidence=EXPERIMENTAL
+FT /note="activator binding site; activation of pF promoter"
+FT misc_feature 17626..17628
+FT /evidence=EXPERIMENTAL
+FT /note="transcription start site for F operon; encodes FI,
+FT FII, E, E', T, U, D"
+FT CDS 17652..18842
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P22501"
+FT /transl_table=11
+FT /gene="FI"
+FT /function="essential tail protein; tail sheath"
+FT /product="gpFI"
+FT /protein_id="AAD03289.1"
+FT /translation="MSDYHHGVQVLEINEGTRVISTVSTAIVGMVCTASDADAETFPLN
+FT KPVLITNVQSAISKAGKKGTLAASLQAIADQSKPVTVVMRVEDGTGDDEETKLAQTVSN
+FT IIGTTDENGQYTGLKAMLAAESVTGVKPRILGVPGLDTKEVAVALASVCQKLRAFGYIS
+FT AWGCKTISEVKAYRQNFSQRELMVIWPDFLAWDTVTSTTATAYATARALGLRAKIDQEQ
+FT GWHKTLSNVGVNGVTGISASVFWDLQESGTDADLLNESGVTTLIRRDGFRFWGNRTCSD
+FT DPLFLFENYTRTAQVVADTMAEAHMWAVDKPITATLIRDIVDGINAKFRELKTNGYIVD
+FT ATCWFSEESNDAETLKAGKLYIDYDYTPVPPLENLTLRQRITDKYLANLVTSVNSN"
+FT variation 18183
+FT /note="Fam4 mutation"
+FT /replace="t"
+FT /gene="FI"
+FT CDS 18855..19373
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P22502"
+FT /transl_table=11
+FT /gene="FII"
+FT /function="essential tail protein; tail tube"
+FT /product="gpFII"
+FT /protein_id="AAD03290.1"
+FT /translation="MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNG
+FT SAPVDLGLDDDALSMEWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVAVE
+FT VVMRGRQKEIDTGEGKQGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRL
+FT EQHRRNIGL"
+FT CDS join(19430..19684,19684..19857)
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O64312"
+FT /note="shares amino terminus with gpE; -1 frameshift"
+FT /transl_table=11
+FT /gene="E+E'"
+FT /function="essential tail protein"
+FT /product="gpE+E'"
+FT /protein_id="AAD03292.1"
+FT /translation="MNKENVITLDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANSE
+FT VDALIKVLPRMTAPMLTEQEVAALELPDLVALAGKVVGFLVAELGAVTFPKNLSVDDLM
+FT ADVAVIFHWPPSELYPMSLTELITWREKALRRSGNTNE"
+FT CDS 19430..19705
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O64313"
+FT /transl_table=11
+FT /gene="E"
+FT /function="essential tail protein"
+FT /product="gpE"
+FT /protein_id="AAD03291.1"
+FT /translation="MNKENVITLDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANSE
+FT VDALIKVLPRMTAPMLTEQEVAALELPDLVALAGKVVGFLSPNSVQ"
+FT variation 19473
+FT /note="Ets55 mutation"
+FT /replace="a"
+FT /gene="E"
+FT variation 19619
+FT /note="Eam30 mutation"
+FT /replace="t"
+FT /gene="E"
+FT misc_feature 19685
+FT /evidence=EXPERIMENTAL
+FT /note="site of -1 translational frameshift"
+FT /gene="E+E'"
+FT CDS 19850..22297
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O64314"
+FT /transl_table=11
+FT /gene="T"
+FT /function="essential tail protein; putative tail length
+FT determinator"
+FT /product="gpT"
+FT /protein_id="AAD03293.1"
+FT /translation="MSNNVKLQVLLRAVDQASRPFKSIRTASKSLSGDIRETQKSLREL
+FT NGHASRIEGFRKTSAQLAVTGHALEKARQEAEALATQFKNTERPTRAQAKVLESAKRAA
+FT EDLQAKYNRLTDSVKRQQRELAAVGINTRNLAHDEQGLKNRISETTAQLNRQRDALVRV
+FT SAQQAKLNAVKQRYQAGKELAGNMASVGAAGVGIAAAGTMAGVKLLMPGYEFAQKNSEL
+FT QAVIGVAKDSAEMAALRKQARQLGDNTAASADDAAGAQIIIAKAGGDVDAIQAATPVTL
+FT NMALANRRTMEENAALLMGMKSAFQLSNDKVAHIGDVLSMTMNKTAADFDGMSDALTYA
+FT APVAKNAGVSIEETAAMVGALHDAKITGSMAGTGSRAVLSRLQAPTGKAWDALKELGVK
+FT TSDSKGNTRPIFTILKEMQASFEKNRLGTAQQAEYMKTIFGEEASSAAAVLMTAASTGK
+FT LDKLTAAFKASDGKTAELVNIMQDNLGGDFKAFQSAYEAVGTDLFDQQEGALRKLTQTA
+FT TKYVLKLDGWIQKNKSLASTIGIIAGGALALTGIIGAIGLVAWPVITGINAIIAAAGAM
+FT GAVFTTVGSAVMTAIGAISWPVVAVVAAIVAGALLIRKYWEPVSAFFGGVVEGLKAAFA
+FT PVGELFTPLKPVFDWLGEKLQAAWQWFKNLIAPVKATQDTLNRCRDTGVMFGQALADAL
+FT MLPLNAFNKLRSGIDWVLEKLGVINKESDTLDQTAARTHTATYGTGDYIPATSSYAGYQ
+FT AYQPVTAPAGRSYVDQSKNEYHISLTGGTAPGTQLDRQLQDALEKYERDKRARARASMM
+FT HDG"
+FT variation 20669
+FT /note="Tam215 mutation"
+FT /replace="t"
+FT /gene="T"
+FT variation 21101
+FT /note="Tam5 mutation"
+FT /replace="t"
+FT /gene="T"
+FT variation 21528
+FT /note="Tam64 mutation"
+FT /replace="a"
+FT /gene="T"
+FT CDS 22312..22791
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O64315"
+FT /transl_table=11
+FT /gene="U"
+FT /function="essential tail protein"
+FT /product="gpU"
+FT /protein_id="AAD03294.1"
+FT /translation="MMLALGMFVFMRQTLPHQTMQRESDYRWPSNSRIGKRDAFQFLGV
+FT GEENITLAGVLYPELTGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETGSI
+FT FFADGTPRKIDFTLSLTRVDESLAALYGDIGKQAESLIGKAGSMATRFTGMTGAG"
+FT variation 22363
+FT /note="Uam25 mutation"
+FT /replace="t"
+FT /gene="U"
+FT variation 22501
+FT /note="Uam77 and Uam92 mutations"
+FT /replace="t"
+FT /gene="U"
+FT CDS 22791..23954
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P10312"
+FT /transl_table=11
+FT /gene="D"
+FT /function="essential tail protein"
+FT /product="gpD"
+FT /protein_id="AAD03295.1"
+FT /translation="MLDALTFDAGSTLTPDYMLMLDSRDITGNISDRLMSMTLTDNRGF
+FT EADQLDIELNDADGQVGLPVRGAVLTVYIGWKGFALVCKGKFTVDEVEHRGAPDVVTIR
+FT ARSADFRGTLNSRREGSWHDTTLGAIVKAIATRNRLEASVAPSLAGIKIPHIDQSQESD
+FT AKFLTRLAERNGGEVSVKMGKLLFLKAGQGVTASGKKIPQVTITRSDGDRHHFAIADRG
+FT AYTGVTAKWLHTKDPKPQKQKVKLKRKKKEKHLRALEHPKAKPVRQKKAPKVPEAREGE
+FT YMAGEADNVFALTTVYATKAQAMRAAQAKWDKLQRGVAEFSISLATGRADIYTETPVKV
+FT SGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEVRLSDVEYETEDDE"
+FT variation 23592
+FT /note="Dam6 mutation"
+FT /replace="t"
+FT /gene="D"
+FT -35_signal 23973..23975
+FT -10_signal 23996..24002
+FT prim_transcript 24008..24288
+FT /note="putative"
+FT CDS 24036..24254
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P08762"
+FT /transl_table=11
+FT /gene="ogr"
+FT /product="Ogr"
+FT /protein_id="AAD03296.1"
+FT /translation="MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESV
+FT QRYIVKPGEVHAVRPHPLPSGQQIMWM"
+FT variation 24148..25274
+FT /note="del15 deletion"
+FT /replace=""
+FT variation 24160
+FT /note="ogr1 and ogr52 mutations"
+FT /replace="g"
+FT /gene="ogr"
+FT terminator 24265..24288
+FT /evidence=EXPERIMENTAL
+FT /note="rho-independent terminator for ogr transcript and F
+FT operon"
+FT protein_bind 24293..24320
+FT /note="P arm"
+FT /bound_moiety="Int"
+FT protein_bind 24324..24357
+FT /bound_moiety="IHF"
+FT misc_feature complement(24356..24382)
+FT /note="attP"
+FT protein_bind 24356..24383
+FT /note="attP core"
+FT /bound_moiety="Int"
+FT variation 24372
+FT /note="saf mutation; altered integration site specificity"
+FT /replace="g"
+FT variation 24376
+FT /note="left end del3 deletion/insertion"
+FT variation 24378..25927
+FT /note="vir22 deletion/insertion"
+FT variation 24378..25065
+FT /note="del6 deletion"
+FT /replace=""
+FT variation 24381..26340
+FT /note="vir94 deletion/insertion"
+FT protein_bind 24399..24472
+FT /bound_moiety="Cox"
+FT CDS complement(24462..25475)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P36932"
+FT /transl_table=11
+FT /gene="int"
+FT /function="integrase"
+FT /product="Int"
+FT /protein_id="AAD03297.1"
+FT /translation="MAIKKLDDGRYEVDIRPTGRNGKRIRRKFDKKSEAVAFEKYTLYN
+FT HHNKEWLSKPTDKRRLSELTQIWWDLKGKHEEHGKSNLGKIEIFTKITNDPCAFQITKS
+FT LISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPETG
+FT YLTQEEIALLLAALDGDNKKIAILCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPR
+FT TVPISEAVAKMIADNKRGFLFPDADYPRFRRTMKAIKPDLPMGQATHALRHSFATHFMI
+FT NGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAISLNPLRGGTEAESVHTVSTVE"
+FT protein_bind 24470..24496
+FT /note="P' arm"
+FT /gene="int"
+FT /bound_moiety="Int"
+FT variation complement(24539)
+FT /note="intam150 mutation"
+FT /replace="a"
+FT /gene="int"
+FT variation complement(25130)
+FT /note="intam239 mutation"
+FT /replace="a"
+FT /gene="int"
+FT variation complement(25454)
+FT /note="nip1 mutation"
+FT /replace="t"
+FT /gene="int"
+FT variation 25492..25839
+FT /note="vir 79 deletion"
+FT /replace=""
+FT CDS complement(25591..25890)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P04132"
+FT /transl_table=11
+FT /gene="C"
+FT /function="immunity repressor"
+FT /product="gpC"
+FT /protein_id="AAD03298.1"
+FT /translation="MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPP
+FT TDVMMNILQTPQFTKYTLWFMTNQIAPESGQIAPALAHFGQNETTSPHSGQKTG"
+FT variation complement(25637)
+FT /note="sly1 mutation"
+FT /replace="t"
+FT /gene="C"
+FT variation complement(25682)
+FT /note="cts7 mutation"
+FT /replace="t"
+FT /gene="C"
+FT variation complement(25686..25702)
+FT /note="cam11 and cam13 mutations"
+FT /replace="a"
+FT /gene="C"
+FT variation complement(25702)
+FT /note="cts6 mutation"
+FT /replace="a"
+FT /gene="C"
+FT variation complement(25731)
+FT /note="cam10 and cam12 mutations"
+FT /replace="a"
+FT /gene="C"
+FT variation complement(25772)
+FT /note="cts9 mutation"
+FT /replace="t"
+FT /gene="C"
+FT variation complement(25802)
+FT /note="vir1 mutation"
+FT /replace="t"
+FT /gene="C"
+FT variation complement(25829)
+FT /note="cts8 mutation"
+FT /replace="g"
+FT /gene="C"
+FT variation complement(25844)
+FT /note="cts5 mutation"
+FT /replace="a"
+FT /gene="C"
+FT -35_signal 25884..25889
+FT /note="early promoter Pe"
+FT misc_feature 25894..25901
+FT /note="O1 repressor binding site"
+FT variation 25899..25955
+FT /note="vir24 deletion"
+FT /replace=""
+FT variation 25900..25916
+FT /note="vir3 deletion"
+FT /replace=""
+FT variation 25904..25920
+FT /note="vir65 deletion"
+FT /replace=""
+FT -10_signal 25907..25912
+FT /note="early promoter Pe"
+FT variation 25909..25983
+FT /note="vir40 deletion"
+FT /replace=""
+FT variation 25913
+FT /note="c1 mutation"
+FT /replace="c"
+FT misc_feature 25916..25923
+FT /note="O2 repressor binding site"
+FT variation 25922
+FT /note="vir6 mutation"
+FT /replace=""
+FT -10_signal complement(25962..25967)
+FT /note="Pc promoter"
+FT -35_signal complement(25982..25987)
+FT /note="Pc promoter"
+FT CDS 26005..26280
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P07695"
+FT /transl_table=11
+FT /gene="cox"
+FT /function="repressor of Pc; required for prophage excision;
+FT inhibits integration; activates P11 promoter of satellite
+FT phage P4"
+FT /product="Cox"
+FT /protein_id="AAD03299.1"
+FT /translation="MSKQVTLMTDAIPYQEFAKLIGKSTGAVRRMIDKGKLPVIDMTDP
+FT QSASGRAGEYWVYLPAWNNGLKLAYESRPKEIRDGWLMWLGLGEPR"
+FT variation 26069
+FT /note="cox3 mutation"
+FT /replace="a"
+FT /gene="cox"
+FT variation 26129
+FT /note="cox2 mutation"
+FT /replace="c"
+FT /gene="cox"
+FT variation 26164
+FT /note="cox4 mutation"
+FT /replace="a"
+FT /gene="cox"
+FT CDS 26291..26461
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q38498"
+FT /transl_table=11
+FT /gene="orf78"
+FT /product="Orf78"
+FT /protein_id="AAD03300.1"
+FT /translation="MNEPRCIAQLLRNESPRAIDFTITHGKGRKGIIIRTKKQSPLKKA
+FT LTFLKSRRVWK"
+FT CDS 26458..26958
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P07696"
+FT /transl_table=11
+FT /gene="B"
+FT /function="essential protein; DNA replication; required for
+FT lagging strand synthesis"
+FT /product="gpB"
+FT /protein_id="AAD03301.1"
+FT /translation="MTVMTLNLVEKQPAAMRRIIGKHLAVPRWQDTCDYYNQMMERERL
+FT TVCFHAQLKQRHATMCFEEMNDVERERLVCAIDELRGAFSKRRQVGASEYAYISFLTVS
+FT QRRTLFMHAGLTEKEFNQPYWRINEESCYWRDALFRALRELFSLFEYAPTILTSVKPEQ
+FT YLH"
+FT variation 26525
+FT /note="rlb1 mutation"
+FT /replace="g"
+FT /gene="B"
+FT variation 26611
+FT /note="Bam213 mutation"
+FT /replace="t"
+FT /gene="B"
+FT variation 26722
+FT /note="Bam116 mutation"
+FT /replace="t"
+FT /gene="B"
+FT variation 26762
+FT /note="Bts6 mutation"
+FT /replace="t"
+FT /gene="B"
+FT variation 26914
+FT /note="Bts40 mutation"
+FT /replace="t"
+FT /gene="B"
+FT terminator 26980..27007
+FT /note="putative rho-independent terminator"
+FT CDS 27022..27246
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:Q06422"
+FT /transl_table=11
+FT /gene="orf80"
+FT /product="Orf80"
+FT /protein_id="AAD03302.1"
+FT /translation="MHTVSENQCGIYALLLQQARTEAQADAATRFSSHLDAMIRHITKA
+FT ELSRVEIVELLSQESEKFHNIGLSRGEVL"
+FT CDS 27246..27548
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:Q06423"
+FT /transl_table=11
+FT /gene="orf81"
+FT /product="Orf81"
+FT /protein_id="AAD03303.1"
+FT /translation="MFCSRAVVLLNNALKIAVMKNGDLSLIQLGLDKEKREITESVIAI
+FT YQSELNLLSDVVNLLVKRAVFHKQISSVDELTKLTTEIASYCADEFKKLNDKRNW"
+FT CDS 27548..27772
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:Q06424"
+FT /transl_table=11
+FT /gene="orf82"
+FT /product="Orf82"
+FT /protein_id="AAD03304.1"
+FT /translation="MPDNVDFIQEQQAELLERQINAARVKHCGASALVCEECDAPIPAA
+FT RRAAYPSATRCVSCQSVFEAKNKHYRRTA"
+FT CDS 27769..28044
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:Q06425"
+FT /transl_table=11
+FT /gene="orf83"
+FT /product="Orf83"
+FT /protein_id="AAD03305.1"
+FT /translation="MSIRIEIGERYVVTSDSFQFILHEKKRAESGKNAGQEWLAVVGYY
+FT PKLSQLVSGLMHHDILTGSAKSFADLNVQVEQLSKRCSEAFGSYGR"
+FT CDS 28034..30319
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:Q06419"
+FT /transl_table=11
+FT /gene="A"
+FT /function="essential protein; DNA replication; makes
+FT site-specific nick at origin of replication"
+FT /product="gpA"
+FT /protein_id="AAD03306.1"
+FT /translation="MAVKASGRFVPPSAFAAGTGKMFTGAYAWNAPREAVGRERPLTRD
+FT EMRQMQGVLSTINRLPYFLRSLFTSRYDYIRRNKSPVHGFYFLTSTFQRRLWPRIERVN
+FT QRHEMNTDASLLFLAERDHYARLPGMNDKELKKFAARISSQLFMMYEELSDAWVDAHGE
+FT KESLFTDEAQAHLYGHVAGAARAFNISPLYWKKYRKGQMTTRQAYSAIARLFNDEWWTH
+FT QLKGQRMRWHETLLIAVGEVNKDRSPYASKHAIRDVRARRQANLEFLKSCDLENRETGE
+FT RIDLISKVMGSISNPEIRRMELMNTIAGIERYAAAEGDVGMFITLTAPSKYHPTRQVGK
+FT GESKTVQLNHGWNDEAFNPKDAQRYLCHIWSLMRTAFKDNDLQVYGLRVVEPHHDGTPH
+FT WHMMLFCNPRQRNQIIEIMRRYALKEDGDERGAARNRFQAKHLNQGGAAGYIAKYISKN
+FT IDGYALDGQLDNDTGRPLKDTAAAVTAWASTWRIPQFKTVGLPTMGAYRELRKLPRGVS
+FT IADEFDERVEAARAAADSGDFALYISAQGGANVPRDCQTVRVARSPSDEVNEYEEEVER
+FT VVGIYAPHLGARHIHITRTTDWRIVPKVPVVEPLTLKSGIAAPRSPVNNCGKLTGGDTS
+FT LPAPTPSEHAAAVLNLVDDGVIEWNEPEVVRALRGALKYDMRTPNRQQRNGSPLKPHEI
+FT APSARLTRSERLQITRIRVDLAQNGIRPQRWELEALARGATVNYDGKKFTYPVADEWPG
+FT FSTVMEWT"
+FT variation 28649
+FT /note="Aam127 mutation"
+FT /replace="t"
+FT /gene="A"
+FT variation 29528
+FT /note="Ats54 mutation"
+FT /replace="a"
+FT /gene="A"
+FT rep_origin 29892
+FT /evidence=EXPERIMENTAL
+FT /note="nick site at ori"
+FT CDS 30316..30645
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:Q06426"
+FT /transl_table=11
+FT /gene="orf91"
+FT /product="Orf91"
+FT /protein_id="AAD03307.1"
+FT /translation="MMAKIHEVKLHAKYFDLVLEGKKRAEFRKKDRNYERGDTLILHEW
+FT VQGVFTGRKVEARITDVTDLSDWLEDYVLLHRILGEILPLTVKLAVSSTFFINLRRRTV
+FT AIYLL"
+FT CDS complement(30684..31445)
+FT /codon_start=1
+FT /db_xref="SPTREMBL:P79670"
+FT /transl_table=11
+FT /gene="tin"
+FT /function="nonessential protein; lysogenic conversion;
+FT blocks growth of T-even phages"
+FT /product="Tin"
+FT /protein_id="AAD03308.1"
+FT /translation="MNNMDIVKAVKDGMKKSADATYLMDFRSGAKINTEYVATVSIGLS
+FT LLEIKSFRHGDYKVIFEYHTNKFINATVPLSKRSDPQKIFSKKTVRKNTNTTRSGRIDI
+FT AILDSRPFFDIPICAIEVKGNAPCKSLLFSDIRRNLEYFKHTGPTGNSSLGLALNCSFH
+FT SYNDSTKKNYCTTIHHKEDMIRKLKNKYKKYISELNEEIPDDISVTIDVFTAAEHLLSP
+FT DADQYEYESHIDDLHLTLGVMVIFERKSILN"
+FT variation 30992..33334
+FT /note="del4 deletion"
+FT /replace=""
+FT variation 31022..33454
+FT /note="del1 deletion"
+FT /replace=""
+FT CDS complement(31620..33380)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P13520"
+FT /transl_table=11
+FT /gene="old"
+FT /function="nonessential protein; lysogenic conversion;
+FT exonuclease; blocks growth of phage lambda"
+FT /product="Old"
+FT /protein_id="AAD03309.1"
+FT /translation="MTVRLASVSISNFRSCKSTSAILRPFTALVGYNNAGKSNIILAIK
+FT WLLDGSLISESDVYDPTHPVSVEGVIQGITDDTLSLLTEENQQKIAPFIIDGTLTFARR
+FT QEFNKETGKAKKSLDVYDGTTWKKNPGGIDGAISNIFPEPIHIPAMSDAVEDSTKCKNT
+FT TTIGKILSAIVSEIKQEHEEKFSKNISEIGKYLSHNGENRLESLNKIDSGVNKKVNQFF
+FT PDVSVKLHFPTPTLDEIFKSGTLKVFESREDEPVMRDISRFGHGTQRSIQMALIQYLAE
+FT IKKENSESKKSNTLIFIDEPELYLHPSAINSVRESLVTLSESGYQVIISTHSASMLSAK
+FT HAANAIQVCKDSNGTIARKTISEKIEELYKSSSPQLHSAFTLSNSSYLLFSEEVLLVEG
+FT KTETNVLYALYKKINGHELNPSKICIVAVDGKGSLFKMSQIINAIGIKTRILADCDFLS
+FT NILLTEHKDLLSTECDNLLTALIESINSGELSLNTKVTTFESFKSISSKDFIKICNHEK
+FT TQKHIHEIHQKLKDNGIYIWKSGDIEAVYGFGKKQTEWDSLLDCLCDESKDVRAVIKKY
+FT DEMEDFIKWI"
+FT variation complement(31991)
+FT /note="oldam11 mutation"
+FT /replace="a"
+FT /gene="old"
+FT variation complement(32576)
+FT /note="old1 mutation"
+FT /replace="t"
+FT /gene="old"
+FT misc_feature complement(33424)
+FT /note="transcript start 1; old-tin mRNA"
+FT misc_feature complement(33426)
+FT /note="transcript start 2; old-tin mRNA"
+FT misc_feature 33575..33593
+FT /note="cosR; right cohesive end"
+XX
+SQ Sequence 33593 BP; 8398 A; 7983 C; 8870 G; 8342 T; 0 other;
+ ggcgaggcgg ggaaagcact gcgcgctgac ggtggtgctg attgtatttt ttcagcgtct 60
+ cagcgcgtcg tgacggcact tagtctgccc gttgaggcgt tgtgtgtctg cggggtgttt 120
+ tgtgcggtgg tgagcgtgtg aggggggatg acggggtgta aaaaagccgc ccgcaggcgg 180
+ cgatgttcag tcgttgtcag tgtccagtga gtagttttta aagcggatga cctcctgacc 240
+ gagccagccg tttatctcgc ggatcctgtc ctgtaacggg ataagctcat tgcggacaaa 300
+ gacctttgcc actttctcaa tatcacccag cgacccgacg ttctccggct tgccacccat 360
+ caactgaaag gggatgcggt gcgcgtccag caggtcagcg gcgctggctt ttttgatatt 420
+ aaaaaaatcg tccttcgtcg ccacttcact gagggggata attttaatgc cgtcggcttt 480
+ cccctgtggg gcatagagaa acaggttttt aaagttgttg cggcctttcg acttgaccat 540
+ gttttcgcga agcatttcga tatcgttgcg atcctgcacg gcatcggtga catacatgat 600
+ gtatccggca tgtgcgccat tttcgtaata cttgcggcgg aacaacgtgg ccgactcatt 660
+ cagccaggca gagttaaggg cgctgagata ttccggcagg ccgtacagct cctgattaat 720
+ atccggctcc agcaggtgaa acacggagcc gggcgcgaag gctgtcggct cgttgaagga 780
+ cggcacccac cagtaaacat cctcttccac gccacggcgg gtatattttg ccggtgaggt 840
+ ttccagtctg atgaccttac cggtggtgct gtaacgcttt tccagaaacg cattaccgaa 900
+ caccagaaaa tccagcacaa agcggctgaa atcctgctgg gaaagccatg gatgcgggat 960
+ aaatgtcgag gccagaatat tgcgtttgac gtaaatcggc gagctgtgat gcacggcagc 1020
+ ccgcaggctt tttgccagac cggtaaagct gaccggtggc tcataccatc tgccgttact 1080
+ gatgcactcg acgtaatcca gaatgtcacg gcggtcgagt accggcaccg gctcaccaaa 1140
+ ggtgaatgcc tccattttcg ggccgctggc ggtcattgtt tttgccgcag gttgcggtgt 1200
+ tttccctttt ttcttgctca tcagtaaaac tccagaatgg tggatgtcag cggggtgctg 1260
+ ataccggcgg tgagtggctc atttaacagg gcgtgcatgg tcgcccaggc gaggtcggcg 1320
+ tggctggctt cctcgctgcg gctggcctca taggtggcgc tgcgtccgct gctggtcatg 1380
+ gtcttgcgga tagccataaa cgagctggtg atgtcggtgg cgctgacgtc gtattccaga 1440
+ cagccacggc ggataacgtc ttttgccttg agcaccattg cggttttcat ttccggcgtg 1500
+ tagcggatat cacgcgcggc gggatagaac gagcgcacga gctggaacac gccgacaccg 1560
+ aggccggtgg catcaatacc gatgtattcg acgttgtatt tttcggtgag tttgcggatg 1620
+ gattccgcct gggtggcaaa gtccatgcct ttccactggt gacgctcaag tattctgaat 1680
+ ttgccaccgg ccaccaccgg cggtgccagt accacgcatc cggcgctgtc gccacggtgt 1740
+ gacgggtcgt aaccaatcca taccgggcgg gagccgaacg gattggcggc aaacggcgca 1800
+ tagtcttccc attcttccag cgtgtcgacc atgcagcgtt gcagctcctc gaacgggaac 1860
+ accgatgcct tgtcgtcaac aaattcacac atgaacaggt ttttaaaatc gtcggcgctg 1920
+ ttttcgcgtt tgagctgctc aatgtcgaac agcgtgcagc cgcctttcag ggcgtcctca 1980
+ atggtgacaa tctgtcgcca ctggccgtcc gcacagagaa gcccaccggc aagggcgtta 2040
+ tgactgacgt cgatttccac gcgttcggcg gcgctggcgc gtccccggtt aaacagttca 2100
+ cccgaccaga acgggtaggc gtcgtgcgcc agcgtggacg gggtggagaa ataggtcgag 2160
+ cgcaggtgac tctgtgaggc catacctgat gccaccttac gcagtacctg aaaattcggg 2220
+ atccagaaaa tctcatcgac gtacaggtcg ccgttatgac tctgcgcggt gttggagttg 2280
+ gtgccgagaa aaatcagttt tgcgccgtta ttgcccagga caatcgggtc accggtcagg 2340
+ tcaacgtcaa ccagacgggc aaaggcgatg atgtattcgc ggaacacata cgcctgtgtt 2400
+ ttactggccg acagaaaaat ctggttatga ccggttttca gggcacgcag cagcgcctcg 2460
+ cgggaaaaat aaaacgtcgc gccaatctgg cgggatttca ggatatcgcg gatgcggtgc 2520
+ tcaagcccgg cacgatacca gtgcagctga tagtcgaaag actgctcaaa gaaaatctgc 2580
+ tccagctttt cgatggcctc gtcactgaaa aaattctttt tcggtttgcg ccgtccgcct 2640
+ ttgttacggt tagcgacgtt cggattaagg tctgcctcgt tgccggtctg gctgtagcgg 2700
+ ttgacccgtg ccagtcgttc aatctggcgt cccagcaggt caatttcctt gaagtcaccg 2760
+ ccggttttct gtggtttgat gatgagctgg gtcagccgcg cttccagact catttcgaca 2820
+ cggctgatgg gggcaacgct gtcccagccg tcgcgctgtt tccagctctg cactgtcggg 2880
+ cgtttcatct gcaacatggc ggcaatctgc ggcacggaaa acccctgcca gtacagcagc 2940
+ gccgcctgac gacgcgggtc gtgtaaaaga gtggtgtctg tggtgatggt catgaatacc 3000
+ tcgccgtgat gaatacacgg caaggctact gagtcgcgcc ccgcgattcg ctaaggtgct 3060
+ gttgtgtcag tgataagcca tccgggactg atggcggagg atgcgcatcg tcgggaaact 3120
+ gatgccgaca tgtgactcct ctaatcacta ttcaggactc ctgacaatgg caaaaaaagt 3180
+ ctcaaaattc tttcgtatcg gcgttgaggg tgacacctgt gacgggcgtg tcatcagtgc 3240
+ gcaggatatt caggaaatgg ccgaaacctt tgacccgcgt gtctatggtt gccgcattaa 3300
+ cctggaacat ctgcgcggca tcctgcctga cggtattttt aagcgttatg gcgatgtggc 3360
+ cgaactgaag gccgaaaaga ttgacgatga ttcggcgctg aaaggcaaat gggcgctgtt 3420
+ tgcgaaaatc accccgaccg atgaccttat cgcgatgaac aaggccgcgc agaaggtcta 3480
+ cacctcaatg gaaattcagc cgaactttgc caacaccggc aaatgttatc tggtgggtct 3540
+ ggccgtcacc gatgacccgg caagcctcgg cacggaatac ctggaattct gccgcacggc 3600
+ aaaacacaac cccctgaacc gcttcaaatt aagccctgaa aacctgattt cagtggcaac 3660
+ gcctgttgag ctggaatttg aagacctgcc tgaaaccgtg ttcaccgccc tgaccgaaaa 3720
+ ggtgaagtcc atttttggcc gcaaacaggc cagcgatgat gcccgtctga atgacgtgca 3780
+ tgaagcggtg accgctgttg ctgaacatgt gcaggaaaaa ctgagcgcca ctgagcagcg 3840
+ cctcgctgag atggaaaccg ccttttctgc acttaagcag gaggtgactg acagggcgga 3900
+ tgaaaccagc caggcattca cccgcctgaa aaacagtctc gaccacaccg aaagtctgac 3960
+ ccagcagcgc cgcagcaaag ccaccggcgg tggcggtgac gccctgatga cgaactgctg 4020
+ accggcgtca gtcagtccgg gaaaaccttc acgattaacc cttaatttca ggaaaaacta 4080
+ tgcgccagga aacccgcttt aaatttaatg cctacctgtc ccgtgttgcc gaactgaacg 4140
+ gcatcgacgc cggtgatgtg tcgaaaaaat tcaccgttga accgtcggtc acccagaccc 4200
+ tgatgaacac catgcaggag tcctctgact ttctgacccg catcaatatt gtgccggtca 4260
+ gcgaaatgaa aggggaaaaa attggtatcg gtgtcaccgg ctccatcgcc agcactaccg 4320
+ acactgccgg tggtaccgag cgtcagccga aggacttctc gaagctggcg tcaaacaagt 4380
+ acgaatgcga ccagattaac ttcgattttt atatccgcta caaaacgctg gacctgtggg 4440
+ cgcgttatca ggatttccag ctccgtatcc gtaacgccat tatcaaacgc cagtcccttg 4500
+ atttcatcat ggccggtttt aacggcgtga agcgtgccga aacctctgac cgcagcagca 4560
+ atccgatgtt gcaggatgtg gcggtcggct ggctgcagaa ataccgcaat gaagcaccgg 4620
+ cgcgcgtgat gagcaaggtc actgacgagg aaggccgcac cacctctgag gttatccgcg 4680
+ tgggtaaggg cggtgattat gccagccttg atgcactggt gatggatgcg accaacaacc 4740
+ tgattgaacc gtggtatcag gaagaccctg accttgtggt gattgtgggg cgtcagctac 4800
+ tggcggacaa gtatttcccc atcgtcaaca aggagcagga caacagcgaa atgctggccg 4860
+ ctgacgtcat catcagccag aaacgcatcg gtaacctacc agcggtacgc gtcccgtact 4920
+ tcccggcgga tgcgatgctc atcacgaagc tggaaaacct gtccatctac tacatggatg 4980
+ acagccatcg ccgcgtgatt gaggaaaacc cgaaactcga ccgcgtggag aactacgagt 5040
+ caatgaacat tgattacgtg gtggaagact acgccgccgg ttgtctggtg gaaaaaatca 5100
+ aggtcggtga cttctccaca ccggctaagg cgaccgcaga gccgggagcg taaccgatga 5160
+ cgagtcccgc acagcgccac atgatgcggg tctcggcagc gatgaccgcg cagcgggaag 5220
+ ccgccccgct gcgacatgca actgtctatg agcagatgct ggttaagctc gccgcagacc 5280
+ agcgcacact gaaagcgatt tactcaaaag agctgaaggc cgcaaaaaaa cgcgaactgc 5340
+ tgccgttctg gttgccgtgg gtgaacggcg tgctggagct gggcaaaggt gcacaggatg 5400
+ acattctgat gacggtcatg ctgtggcgtc tggataccgg cgatattgcc ggtgcgctgg 5460
+ agattgcccg ttatgccctg aagtacggtc tgaccatgcc gggtaaacac cgccgtaccc 5520
+ cgccgtacat gttcaccgag gaggtagcgc ttgcggccat gcgcgctcac gctgccggtg 5580
+ agtctgtgga tacccgcctg ctgacggaga cccttgaact gaccgccacg gctgacatgc 5640
+ ctgatgaagt gcgcgcaaag ctgcacaaaa tcaccggtct gtttctgcgt gacggtggtg 5700
+ atgccgccgg tgcgctggcg cacctgcaac gtgcgacaca gctcgactgt caggcaggcg 5760
+ tcaaaaaaga gattgaacga ctggagcggg agctgaaacc gaagccggag ccgcagccca 5820
+ aagcggccac ccgcgccccg cgtaagaccc ggagcgtgac accggcaaaa cgtggacgcc 5880
+ cgaaaaagaa agccagttaa caaccgaatg cgccccgcgc cagggcggca cgccggtcag 5940
+ tgacggtgaa tcacctgaca ctgcaccggc gtccaccgcc cgacttttca gaggtagtca 6000
+ tgatgacgct gattattccg cgaaaggagg ctcccgtgtc cggtgagggt acggtggtca 6060
+ tcccgcaacc ggcaggcgac gagccggtga ttaaaaacac gttctttttt cccgatatcg 6120
+ acccgaagcg cgtccgggaa cgtatgcgcc ttgagcagac cgtcgccccc gcccgtctgc 6180
+ gtgaggccat caagtcaggc atggctgaaa cgaatgcgga gctgtacgag taccgcgaac 6240
+ agaaaattgc cgccggtttt acgcgtctgg ctgacgtccc ggcggacgat atcgacggtg 6300
+ aaagcatcaa ggttttttac tacgagcgcg ccgtgtgtgc gatggcgacc gcgtcgcttt 6360
+ atgagcgtta tcgcggtgtg gatgccagtg cgaaaggcga caagaaggct gacagcattg 6420
+ acagcaccat tgatgagctg tggcgggata tgcgctgggc ggtggcgcgc atccagggca 6480
+ agccgcgctg catcgtgagt caaatctgat gaagaccttt gcgctacagg gcgacacgct 6540
+ cgacgccatt tgtgtccgct attacgggcg cactgagggc gtggttgaga ccgtgctcgc 6600
+ cgcaaatccg ggactggctg aactgggggc ggtgctgcca cacggcaccg ccgtcgaact 6660
+ gcccgacgtt cagaccgcgc ccgtggctga aactgtcaat ctgtgggagt aacgcatgac 6720
+ agcagaagaa aaaagcgtcc tgtcgctttt catgattggg gtgctgattg ttgtcggcaa 6780
+ ggtgcttgcc ggtggtgaac ctatcacccc gcgtctgttt atcgggcgca tgttgctcgg 6840
+ tggttttgtc tcgatggttg ccggtgttgt tctggtgcag tttcctgacc tgtcactgcc 6900
+ agcggtgtgc ggcatcggct ccatgctggg tatcgccggt tatcaggtga ttgagattgc 6960
+ cattcagcgc cgctttaagg gcagggggaa acagtaatgc cggtaattaa cacgcatcag 7020
+ aatatcgccg cctttctcga catgctggcc gtgtccgaag ggacggcgaa tcatccactg 7080
+ acgaaaaacc ggggctatga cgtgatagtc accggactgg acgggaagcc ggaaattttc 7140
+ accgactaca gtgaccaccc gttcgcacat ggccgaccgg cgaaggtgtt taaccgtcgc 7200
+ ggtgaaaaat ccacggcctc cggtcgctat cagcagcttt acctgttctg gccgcattac 7260
+ cgcaaacagc ttgccctgcc ggatttcagt ccgttgtcac aggacagact cgccattcag 7320
+ ttgatccgcg aacgcggagc actggatgac atccgggcgg gacgcattga gcgcgccatt 7380
+ tcacgctgtc gcaatatctg ggcgtccctg ccgggtgccg gttacggtca gcgtgagcat 7440
+ tcactggaaa aactggtcac cgtctggcgt accgctggcg gcgtaccggc ttaaacggag 7500
+ taaataccat gaagaaatta tccctttcac tgatgctgaa cgtgtcgctg gcgctgatgc 7560
+ tggcactgtc cctgatttac ccgcagagcg tggccgtcaa ttttgtcgct gcctgggcga 7620
+ ttctggcgac ggttatctgt gtggttgccg gtggtgtggg cgtgtatgcc actgagtatg 7680
+ tgctggaacg ctacgggcgg gagctgccgc cggaatcgct ggccgtgaag attgtcacgt 7740
+ cgctgttttt gcagccggtg ccgtggcgca gacgggcggc ggctctggta gtggtggtgg 7800
+ cgacgtttat ctcgctggtc gctgccgggt ggatttttac cgcgctgatt tatcttgtgg 7860
+ tgtcgctgtt tttccggctg atacgtaaag cctgtcgtca gcgtcttgag gggcgggaac 7920
+ catgtcaagg ctgatgattg tgctggtcgt gttgttatcg ctggcggtgg ccggtctgtt 7980
+ tctggtgaaa cacaaaaatg ccagcctgcg cgcctcgctg gacagggcga acaacgtcgc 8040
+ cagcggtcag cagacgacca tcaccatgct gaaaaatcag cttcatgttg cgctcaccag 8100
+ ggcagataaa aacgagctgg cgcaggtggc actgcgtcag gaactggaga acgccgcgaa 8160
+ acgtgaagca cagcgcgaga aaaccatcac gaggttactt aatgagaacg aagattttcg 8220
+ ccgctggtac ggtgctgacc tgcctgatgc tgtgcgccgg ttgcaccagc gccccgcctg 8280
+ caccgacgcc agtgattgtc cccaacgcat gcccgaaagt gagcctttgc ccgatgccgg 8340
+ gcagtgaccc gcagacgaac ggcgatttaa gtgccgatat ccggcagctt gagaacgcgc 8400
+ tggcacgctg tgccagccag gtaaaaatga ttaaacactg tcaggacgaa aacgatgctc 8460
+ aaacccgaca gcctgcgcag ggcgctgact gatgccgtca cggtgctgaa aactaacccc 8520
+ gatatgctgc ggatattcgt ggataacggg agtattgcct ccacactggc ggcgtcgctg 8580
+ tcattcgaaa agcgttacac gctcaatgtg attgtgaccg actttaccgg tgattttgac 8640
+ ctgctcattg tgccggtgct ggcgtggctg cgggaaaatc agcccgacat catgaccacc 8700
+ gacgaaggcc agaaaaaggg cttcacgttt tatgcagaca tcaacaatga cagcagcttt 8760
+ gatatcagta tcagcctgat gctgaccgag cgcacgctgg tcagtgaggt ggacggcgca 8820
+ ctgcatgtga agaatatctc ggaacccccg ccgccggagc cggtcacccg cccgatggag 8880
+ ctgtatatca atggcgaact ggtgagtaag tgggatgaat gagtttaagc gttttgaaga 8940
+ ccggctgacc ggactgattg aatcgctgtc accgtcaggg cgtcggcgac tgagtgccga 9000
+ actggcgaaa cgtctgcggc agagtcagca gcgtcgggtg atggcacaga aagccccgga 9060
+ cggcacaccc tacgcgccac gccagcagca gagcgtcaga aaaaagaccg gtcgcgttaa 9120
+ gcgaaaaatg tttgcgaaac ttattaccag tcgttttttg catatccgtg ccagcccgga 9180
+ gcaggcatca atggaatttt acggcgggaa gtcgccgaaa atcgccagtg tgcatcagtt 9240
+ tggtctgtcg gaagaaaacc ggaaagacgg taagaaaatt gattatccgg cgcgtcccct 9300
+ gctcggcttt accggtgagg atgtgcagat gattgaagag attatcctgg ctcaccttga 9360
+ gcgttagttt tatccaggca gaggctgatg cgcaattaaa cattgagcgg ccatgctggt 9420
+ cgctcaatgt ttagaggttt atgagtgatt tttatttgat gctttgtatt ctaaaacctt 9480
+ cttattggcg taaaagaatt ttgtatatga caggaatata accagacctg aagtgaaata 9540
+ gacgagggat agtattaata atgctttttt gtgactgtta ttatctttaa tctcctggct 9600
+ taaccattcg gagtcctcct cgtttagctg taagagctta ttgcaggcga tctcaggaag 9660
+ tgtgtctttt ataaatacgt tttgcagtct cttgcaatcg gcaaggctat aagttttatt 9720
+ aaattcaact gctttatttt tgaaggataa aagaactttg tcactataaa catagtacat 9780
+ catgttttta tatggtatgc ctgtggcatc ccttactata acggattgtt cgttgtgtat 9840
+ gtaacatgcg aggagaatgt aaaaaatact ggccagaatt acaattattg ttttaattat 9900
+ gtgtggtggt tttgttatgt caccccagat acgagtaagg aaaaaatacg atgtttttag 9960
+ ttttccatca atcagtccct gctgtatcat tctcacattt tcaatgcctg atacattgat 10020
+ tccgttaatt attttaaata gttgaatgtc gcgccactcg cggtcaagtc tttttaattt 10080
+ tttgtctgaa tatccaaaat tgaaataatg tgcaataagc ctcataaggt tacttttacc 10140
+ aaagctaaaa aatgctaata ctgcaaagct acaaaggaaa aaaacgatta gcccccacac 10200
+ attagtcaca ttatagctga ccattacgct ctccttgaat gttgtctggt agttctacaa 10260
+ atgaatccag atagcataac ttttatatat tgtgcaatct cacatgcatg aacactctcg 10320
+ caaatattca ggaactcgcg cgcgcactgc gcaacatgat tcgcactggc attatcgtcg 10380
+ aaaccgacct taacgccggt cgctgccgcg tgcagaccgg cggcatgtgc accgactggc 10440
+ ttcagtggct gacccatcgc gcaggacgtt cgcgcacatg gtgggcacct tccgtggggg 10500
+ aacaggtgct gattctggcc gtgggtggtg aactcgacac ggcgttcgtt ctgccgggga 10560
+ tttattccgg cgataacccc tcgccgtctg tgtcggcgga tgccctgcat atccgtttcc 10620
+ ctgacggggc ggtgattgaa tatgaacccg aaaccagtgc actcacggta agcggaatta 10680
+ aaacggccag cgtgacggct tccggttctg ttactgccac ggtgccggtg gtcatggtga 10740
+ aagcatcaac ccgcgtcacc ctggacaccc cggaggtggt ctgcaccaac aggctgatta 10800
+ ccggcacgct ggaagtgcag aaaggcggga cgatgcgcgg caacattgaa cacaccggcg 10860
+ gtgaactctc atcaaacggt aaggtactgc atacccataa acaccccggc gacagcggcg 10920
+ gcacaaccgg gagtccttta tgacagcgcg ttatctcgga atgaatcgca gtgatggcct 10980
+ gactgtcact gaccttgagc atatcagcca gagtatcggc gatatcctgc gcacaccggt 11040
+ cggctcacgg gtgatgcgtc gtgattacgg ctcgttgctg gcgtcaatga ttgaccagcc 11100
+ gcagaccccg gcgcttgagt tgcagattaa agtcgcctgt tacatggcag tgctgaaatg 11160
+ ggaaccccgc gtcaccctgt catccgtcac cacggcgcgc agttttgacg ggcgaatgac 11220
+ ggtcacgtta accggccagc acaacgacac cggccagcca ctttcattaa ccatccctgt 11280
+ gagttgaaac catgccgatt atcgacctga accagctacc cgcaccggat gtggtcgagg 11340
+ agctggactt tgaaagcatt ctcgctgaac gcaaggcgac actgatttcc ctttacccgg 11400
+ aagatcagca ggaggcggtc gcccgtaccc tgacactgga atctgagcct ctcgtcaaac 11460
+ tgctggaaga aaatgcttat cgtgagctta tctggcgtca gcgtgtgaat gaggccgcac 11520
+ gggcggtgat gctggcctgt gccgccggta atgaccttga tgtgattggt gccaattaca 11580
+ acaccacgcg cctgactatc accccggcag atgattcgac catcccgccg acaccggcag 11640
+ tgatggaatc tgacaccgat tatcgtctgc gtattcagca ggcttttgag ggcttaagcg 11700
+ tcgccgggtc agtgggagcc tatcagtatc atggtcgcag tgctgacggg cgtgtcgcgg 11760
+ atatttctgt caccagtccg tctccggcct gtgtcaccat ctctgtgctg tcacgtgaaa 11820
+ ataacggcgt cgcatccgaa gacctgctgg ctgtggtgcg taacgccctt aatggcgagg 11880
+ acgtcaggcc ggtggccgac cgcgtgaccg tgcagtctgc cgccatcgtt gaataccaga 11940
+ taaacgccac gctttacctt taccctggtc ccgaaagcga acccatccgc gctgccgctg 12000
+ tgaaaaagct ggaagcgtat atcacggcac agcaccggct ggggcgcgac atccgtctgt 12060
+ ctgccattta tgccgctttg catgtggaag gtgtgcagcg tgtcgaactg gctgcaccac 12120
+ tggccgacat cgtgctcaac agtacgcagg cgtctttctg taccgaatac cgcgtcgtga 12180
+ ccggaggctc ggatgagtga ttcgcgactg ctgccgaccg gctcatcacc gcttgaggtc 12240
+ gccgccgcaa aagcctgtgc ggaaattgaa aaaacgccgg tcagtattcg tgaactgtgg 12300
+ aacccggaca cctgtccggc aaatctgctg ccgtggctgg cgtgggcgtt ttcggtcgac 12360
+ aggtgggatg aaaagtggcc ggaagcgaca aaacgcgccg ttatccgcga tgcctatttc 12420
+ atccactgtc ataagggcac gataggtgca atccggcgtg tggtggagcc gctcggctat 12480
+ ctcatcaacg tgacggagtg gtgggaaaac agtgacccgc ccggcacctt ccggcttgat 12540
+ attggtgtac tggaaagcgg tatcacagag gcaatgtatc aggaaatgga acggctgatt 12600
+ gctgatgcca aacctgcaag ccgtcacctt attggcctga acattacccg ggacattccc 12660
+ ggctatctgt tcgccggtgg tgtggcttac gacggcgatg taattacggt ttaccccgga 12720
+ taagtgagga ataatgagca taaaattcag aaccgttatc accactgccg gtgcagcaaa 12780
+ gctggcagcg gcaaccgcgc cgggaaggcg gaaggtcggc attaccacga tggccgtcgg 12840
+ ggatggcggt ggtaaattgc ctgtcccgga tgccggacag accgggctta tccatgaagt 12900
+ ctggcgacat gcgctgaaca aaatcagcca ggacaaacga aacagtaatt atattatcgc 12960
+ cgagctggtt attccgccgg aggtgggcgg tttctggatg cgtgagcttg gcctgtacga 13020
+ tgatgcggga acgttaattg ccgtggcgaa catggccgaa agctataagc cagcccttgc 13080
+ cgaaggctca ggacgttggc agacctgtcg catggtcatc atcgtcagca gtgtggcctc 13140
+ agtggagctg accattgaca ccacaacggt gatggcgacg caggattacg ttgatgacaa 13200
+ aattgcagag cacgaacagt cacgacgtca cccggacgcc tcgctgacag caaaaggttt 13260
+ tactcagtta agcagtgcga ccaacagcac gtctgaaaca ctggccgcaa cgccgaaagc 13320
+ ggtaaaggcc gcgtatgacc tggctaacgg gaaatatacc gcacaggacg ccaccacagc 13380
+ gcgaaaaggc cttgtccagc ttagtagcgc caccaacagc acgtctgaaa cgctcgccgc 13440
+ aacaccaaaa gccgttaaga cggtaatgga tgaaacgaac aaaaaagcgc cattaaacag 13500
+ ccctgcactg accggaacgc caacgacgcc aactgcgcga cagggaacga ataatactca 13560
+ gatcgcaaac acggctttcg ttatggccgc gattgccgcc cttgtagact cgtcgcctga 13620
+ cgcactgaat acgctgaacg agctggcggc ggcgctgggc aatgacccga attttgctac 13680
+ caccatgact aatgcgcttg cgggtaagca accgaaagat gctaccctga cggcgctggc 13740
+ ggggcttgct actgcggcag acaggtttcc gtattttacg gggaatgatg ttgccagcct 13800
+ ggcgaccctg acaaaagtcg ggcgggatat tctggctaaa tcgaccgttg ccgccgttat 13860
+ cgaatatctc ggtttacagg aaacggtaaa ccgagccggg aacgccgtgc aaaaaaatgg 13920
+ cgataccttg tccggtggac ttacttttga aaacgactca atccttgcct ggattcgaaa 13980
+ tactgactgg gcgaagattg gatttaaaaa tgatgccgat ggtgacactg attcatacat 14040
+ gtggtttgaa acgggggata acggcaatga atatttcaaa tggagaagcc gccagagtac 14100
+ cacaacaaaa gacctgatga cgttgaaatg ggatgcacta aatattcttg ttaatgccgt 14160
+ cattaatggc tgttttggag ttggtacgac gaatgcacta ggtggtagct ctattgttct 14220
+ tggtgataat gataccggat ttaaacagaa tggagacggt attcttgatg tttatgctaa 14280
+ cagtcagcgt gtattccgtt ttcagaatgg agtggctatt gcttttaaaa atattcaggc 14340
+ aggtgatagt aaaaagttct cgctatccag ctctaataca tccacgaaga atattacctt 14400
+ taatttatgg ggtgcttcca cccgtccagt ggttgcagag ttaggcgatg aggccggatg 14460
+ gcatttctat agccagcgaa atacagataa ctcggtaata tttgctgtta acggtcagat 14520
+ gcaacccagc aactggggaa attttgattc ccgctatgtg aaagatgttc gcctgggtac 14580
+ gcgagttgtt caattgatgg cgcgaggtgg tcgttatgaa aaagccggac acacgattac 14640
+ cggattaaga atcattggtg aagtagatgg cgatgatgaa gccatcttca ggccgataca 14700
+ aaaatacatc aatggcacat ggtataacgt tgcgcaggtg taagttatgc agcatttaaa 14760
+ gaacattaag tcaggtaatc caaaaacaaa agagcaatat cagctaacaa agaattttga 14820
+ tgttatctgg ttatggtccg aagacggaaa aaactggtat gaggaagtga agaactttca 14880
+ gccagacaca ataaagattg tttacgatga aaataatatt attgtcgcta tcaccagaga 14940
+ tgcttcaacg cttaatcctg aaggttttag cgttgttgag gttcctgata ttacctccaa 15000
+ ccgacgtgct gacgactcag gtaaatggat gtttaaggat ggtgctgtgg ttaaacggat 15060
+ ttatacggca gatgaacagc aacaacaggc agaatcacaa aaggccgcgt tactttccga 15120
+ agcggaaaac gttattcagc cactggaacg cgctgtcagg ctgaatatgg cgacggatga 15180
+ ggaacgtgca cgactggagt catgggaacg ttacagcgtt ctggtcagcc gtgtggatcc 15240
+ tgcaaatcct gaatggccgg aaatgccgca ataagttgta tgacctctgt tgtgaactta 15300
+ catatctatg gcacagagta aagcctaatc tgaagtccac tctgtgccaa aagcggacct 15360
+ tataaacaag aacaatggtc atatcagtgt gttttgattg catagctaac gtgcgtcttc 15420
+ ctgtacagaa tcataagatg atagggcata ggagatgatt attatcgcgt gttttaaaaa 15480
+ tagctttctg catcaagtgt cacttgcgaa gaggtattgg cgctatgatt ggcatcactc 15540
+ agttcagata atattttaaa tatttggtaa atgttcagat tacacaattc ggtctgcgtc 15600
+ ccgttaaaat tatctactat tagttattac tatgaggtga atggcaagtg ttttccactc 15660
+ gccatttttg ttttttattt ttttaaagcc tttccgacgt ttaaggattt tgccaagcca 15720
+ taaaatattt gatatttcat tcctgttttt atttttggtg agatatttgc gtaacttctt 15780
+ tctctaaaac accaacgtat aaacctatta ttatcttcgg ttgtttctat atagcatatt 15840
+ acattgagac caaaaagaaa ctgaaggaag tcatttgcag ttgtcatgaa ttttggtttt 15900
+ gttgtggaaa tggaactaat atgagtttca agttgtttat atgctaagag gtattcagcg 15960
+ taatcaaaag tatcttttcc agagaggaat tcaaagaact ttaaaaaaat ctcataatgt 16020
+ tcacttccat aataaaatga taaatgatct tttatttctc caagtaaata gttagagtaa 16080
+ tctctttgca tgctaggact ttcaaagtca tctagactaa attgattttt cccatcatca 16140
+ ccgctggcgt gtgatttgat aatttcgagc atccgtaata tatctcttgg gcgataatat 16200
+ gaccagcgaa ggaaattaat aaatgatgtg gggtggttat aattatcatg gacgttgggt 16260
+ gaatcccaag ggaaataatg gtcccatgcc tgtccctttt taagggccat gtcttgctga 16320
+ gtcctaagca gatgatctaa tacctcaaat aattgagagc tacggtggtt aacatattct 16380
+ gtccgccagt ccaagaatac tgaattatct ctgatttttg cgttttgatt ttgtaatcct 16440
+ atggattcaa atatatctgg cctgatcaag agaacggcct tcattctccc ttttcctccc 16500
+ tttatacttg ggaagaaatc gttgttaatc tcccagactg cgtgagctaa tccttttata 16560
+ cattctagat aatcatcgta tggaattgag gaagggcgga tatcaatacc atcgataaat 16620
+ aaaatatgat tttgagataa acgtatttgg ctaaaggcct cttcaaattt tttttgtata 16680
+ taaaataaat ttatctgaaa tctgctctca gaaaaagata aagactctct ttcttcacct 16740
+ tttaaggttg catgcttatg aagtagttcg gctgcaactt ttgactcttg aacaaaactg 16800
+ agggcttgaa ttatttctgg tgaaaatgcc ttaagataat actcatctat tgcatcatta 16860
+ agtgatgaga attttgaata atttagtaac tttgaaattt tcccttcttt atctaatact 16920
+ tgttttgata ttaataaata tagaataact ttccatatgc cagagaagtc agacaaattt 16980
+ aaatgctttt cagatttaag agtgataaat ttttgatatt ctgtctctct tatatattta 17040
+ gttgtagcta gcgtattgtt aatattgtta tttgagagat agatagagta tgcggtttta 17100
+ ccagtacctt tctctcctac aagaaacgat atatttggtt cacataatct agataggtga 17160
+ ttatcacgta tgaacacttt gttaagtaat tctttattct cccttctctt ataattttca 17220
+ gcatcagcat agccaagagt tagatctttg attggtatca ttattacctc aactaaagca 17280
+ attgaaaaac atatggttat aaaaacatag cgctgctctg tcgcatattg tggatatcaa 17340
+ catatgaaat gtaaaggaac tatttgtgga tgaatgaacc gaatcgctgt agcttcggta 17400
+ gtcatctttc agacttgtat aaatgaacaa cttccgcttc tcgctcaaag gaaactgtca 17460
+ gatttgatag cttttgggct atgtaaactg tcagtcggaa aatgagtgag tacaaatcag 17520
+ ggcaggtgag cgaattgccc gccttttctt taccggtggt tgtgctgtcg attagccaac 17580
+ cgggacaaat agcctgacat ctccggcgca actgaaaata ccactcaccc attaaccacg 17640
+ gagttaaacg gatgagtgac tatcatcacg gcgtgcaggt gctggagatt aacgagggca 17700
+ cccgcgtcat ttccaccgta tccacggcca ttgtcggcat ggtctgcacg gccagcgatg 17760
+ cagatgcgga aaccttcccc ctcaataaac ctgtgctgat taccaatgtg cagagcgcaa 17820
+ tttcaaaggc cggtaaaaaa ggcacgctgg cggcatcgtt gcaggccatc gctgaccagt 17880
+ caaaaccggt caccgttgtc atgcgcgtgg aagacggcac cggtgatgac gaggaaacga 17940
+ aactcgcgca gaccgtttcc aatatcatcg gcaccaccga tgaaaacggt cagtacaccg 18000
+ gactaaaagc catgctggcg gcggagtcgg taaccggtgt taaaccgcgt attctcggcg 18060
+ tgccgggact ggataccaaa gaggtggctg ttgcactggc atcagtctgt cagaagctgc 18120
+ gtgctttcgg gtatatcagc gcatggggct gtaaaaccat ttccgaggtg aaagcctatc 18180
+ gtcagaattt cagccagcgt gagctgatgg tcatctggcc ggatttcctc gcatgggata 18240
+ cggtcaccag taccaccgcc accgcgtatg ccaccgcccg tgcgctgggg ctgcgcgcta 18300
+ aaatcgacca ggagcagggc tggcataaaa cgctgtccaa tgtcggggtg aacggtgtta 18360
+ ccggcatcag cgcatctgta ttctgggatt tgcaggagtc cggcaccgat gctgacctgc 18420
+ ttaacgagtc aggcgtcact acgctgattc gccgcgacgg tttccgcttc tggggtaacc 18480
+ gtacctgctc tgatgacccg ctgttcctct ttgaaaacta cacccgcacc gcgcaggtcg 18540
+ tggccgacac gatggctgag gcgcacatgt gggcggtgga caagcccatc actgcaacgc 18600
+ tgattcgcga catcgttgac ggcatcaatg ccaaattccg tgagctgaaa acaaacggct 18660
+ atatcgtgga tgcgacctgc tggttcagcg aagaatccaa cgatgcggaa accctcaagg 18720
+ ccggaaaact gtatatcgac tacgactata caccggtgcc tcctctcgaa aacctgaccc 18780
+ tgcgccagcg tattaccgat aaatacctgg caaatctggt cacctcggtt aacagcaatt 18840
+ aaggagcctg accgatggca atgccgcgca aactcaagtt aatgaacgtc tttctgaacg 18900
+ gctacagcta tcagggcgtt gcaaagtccg tcacgctgcc aaaactgacc cgtaagctcg 18960
+ aaaactatcg cggtgcgggg atgaacggca gcgcaccggt agacctcggc cttgatgacg 19020
+ atgcgctgtc aatggagtgg tcgctcggtg gcttcccgga ttcggttatc tgggagcttt 19080
+ acgccgcaac cggtgtggat gccgtgccga ttcgttttgc aggctcttac cagcgcgacg 19140
+ ataccggcga aacggtggcc gtcgaagtgg tcatgcgtgg acgtcagaaa gaaatcgaca 19200
+ ccggcgaggg taaacaggga gaagacactg agtcgaaaat ctccgtggtc tgcacctatt 19260
+ tccggctgac gatggacggt aaggagctgg tcgaaattga caccatcaac atgattgaga 19320
+ aggtgaacgg cgtcgatcgg ctggagcaac accgccgcaa tatcggcctg tgattttcat 19380
+ ccggtcagcc tggctggccg gttaaccctg attcagaagt gagaaaacca tgaacaaaga 19440
+ aaatgtcatt accctggaca atccggtcaa acgtggtgag caggttatcg aacaggtcac 19500
+ gctgatgaaa cccagtgccg ggacgctacg cggtgtcagt ctggctgcgg ttgcaaactc 19560
+ cgaagtcgat gcactgatta aggtgctgcc gcgcatgacg gcaccgatgc tgaccgagca 19620
+ ggaagtcgcc gcgctggaac tgcctgacct tgtggcgctg gccggtaagg tggtcggttt 19680
+ tttgtcgccg aactcggtgc agtgacgttt ccgaaaaatc tctcggtcga tgacctgatg 19740
+ gcggatgtgg cagtgatatt tcactggccg ccatcagaac tgtatcccat gagcctgacc 19800
+ gaactcatca catggcgcga aaaggcgctc cggcgaagcg gaaacacgaa tgagtaacaa 19860
+ tgtaaaatta caggtattgc tcagggctgt tgaccaggca tcccgcccgt ttaaatccat 19920
+ ccgcacagcg agcaagtcgc tgtcggggga tatccgggaa acacaaaaat cactgcgcga 19980
+ gctgaacggt cacgcatccc gtattgaggg attccgcaag accagtgcac agctcgccgt 20040
+ gactggtcat gcacttgaaa aggcacggca ggaggccgaa gcccttgcca cacagtttaa 20100
+ aaacaccgaa cgtccgaccc gtgctcaggc gaaagtcctg gaatccgcaa agcgtgcggc 20160
+ ggaggactta caggcgaaat ataaccgcct gacagattcc gttaaacgcc agcagcggga 20220
+ actggccgct gtgggaatta atacccgcaa tcttgcacat gatgagcagg gactgaaaaa 20280
+ ccgtatcagt gaaaccaccg cacagcttaa ccgtcagcgt gatgcgctgg tgcgtgtcag 20340
+ tgcgcaacag gcaaaactta acgcagtaaa acagcgttat caggccggaa aggaactggc 20400
+ cggaaatatg gcctcagtgg gcgctgccgg tgtggggatt gcggcggcgg gaacgatggc 20460
+ cggtgttaag ctactgatgc ccggttatga gtttgcgcag aaaaactcag aattacaggc 20520
+ tgtgatcgga gtggcaaaag actccgccga aatggccgca ctccgcaagc aggcgcgcca 20580
+ gctcggcgac aataccgccg cctcggcaga tgatgcagcc ggtgcgcaga ttattattgc 20640
+ gaaagccggt ggggatgttg atgccattca ggcggcaacg ccggtcacgc tgaacatggc 20700
+ gctggcgaac cgtcgcacaa tggaagaaaa cgccgccctg ctgatgggga tgaaatccgc 20760
+ ctttcagctt tcaaacgata aggtcgctca tatcggggat gttctctcca tgacgatgaa 20820
+ caaaaccgcc gccgattttg acggcatgag cgatgcgctg acctatgccg cacctgtggc 20880
+ aaaaaatgcc ggtgtcagca ttgaagaaac cgccgcaatg gtcggggcgc tgcatgatgc 20940
+ aaaaatcaca ggctcaatgg cggggacggg aagccgtgcc gtgttaagcc gcctgcaggc 21000
+ accgacggga aaagcatggg atgcactcaa agagcttgga gtgaaaacct cagacagcaa 21060
+ aggaaacacc cggccaatat ttaccattct gaaagaaatg caggccagtt ttgagaaaaa 21120
+ ccggctcggt actgcccagc aggctgaata catgaaaact attttcgggg aggaggccag 21180
+ ctcagccgct gccgtgctga tgactgccgc ctcaaccgga aagctggaca aactgaccgc 21240
+ tgcgtttaaa gcctcagacg ggaagaccgc cgagctggta aatatcatgc aggacaacct 21300
+ aggcggtgac tttaaagcgt ttcagtccgc ttatgaggcg gtggggactg acctgtttga 21360
+ ccagcaggaa ggcgcgctgc gtaagctcac gcagacggcc acaaagtatg tgttaaaact 21420
+ cgacggctgg atacagaaaa acaaatcact ggcgtcaacc atcggcatca ttgccggcgg 21480
+ tgcactggcg cttactggca tcatcggtgc cattggcctc gtagcctggc cggttatcac 21540
+ cggcatcaat gccatcatcg cggcagcagg cgcaatgggg gcagtcttca cgacggttgg 21600
+ cagtgctgtt atgaccgcca tcggggctat tagctggccg gttgtggccg tggtggctgc 21660
+ cattgtcgcc ggtgcgttgc ttatccgtaa atactgggag cctgtcagcg cattctttgg 21720
+ tggtgtggtt gaagggctga aagcggcatt tgcgccggtg ggggaactgt tcacgccact 21780
+ taaaccggtt tttgactggc tgggcgaaaa gttacaggcc gcgtggcagt ggtttaaaaa 21840
+ cctgattgcc ccggtcaaag ccacccagga caccctgaac cgttgccgtg acacgggcgt 21900
+ catgttcggg caggcactgg ctgacgcgtt gatgctgccg cttaatgcgt tcaacaaact 21960
+ gcgcagtggt attgactggg tactggaaaa actcggtgtt atcaacaaag agtcagacac 22020
+ acttgaccag accgccgcca gaactcatac cgccacgtat ggtaccggtg actatattcc 22080
+ ggcgaccagc tcttatgcag gctatcaggc ttatcagccg gtcacggcac cggctggccg 22140
+ ctcttatgta gaccagagta aaaacgaata tcacatcagc ctgacggggg ggactgcgcc 22200
+ ggggacacag cttgaccgcc agttacagga tgcgctcgaa aaatacgagc gggataaacg 22260
+ tgcgcgcgcc cgtgccagca tgatgcatga cggttaagga ggtgacgaaa aatgatgctc 22320
+ gcgttaggta tgtttgtttt tatgcgccag acgctgccac accagaccat gcagcgtgaa 22380
+ tcagattatc gctggccgtc aaattcccgt atcggtaaac gggatgcctt tcagtttctc 22440
+ ggtgtgggtg aggaaaacat cacgctggcc ggtgtgcttt atcccgaact gaccggcggc 22500
+ aagctgacga tgaccacgct caggctgatg gcagaggagg ggcgggcgtg gccgttgctg 22560
+ gatggcaccg gcatgattta cggcatgtat gtcatcagca gggtgagtga aacagggagt 22620
+ attttctttg cagacggcac accccggaaa attgatttta cgctgtcact cacccgcgtt 22680
+ gatgaatcac tggccgcgct ttatggcgat atcggtaaac aggcggaatc gctcatcggt 22740
+ aaggccggca gtatggcgac cagattcaca ggtatgacgg gggcgggata atgctggatg 22800
+ cgctgacatt tgatgcaggc agtacgctga cgccggatta catgctgatg ctcgacagca 22860
+ gggatattac cggcaatatc agcgaccgtc tgatgagcat gaccctgacg gataaccggg 22920
+ gctttgaggc tgaccagctt gatattgaac tgaacgatgc cgacgggcag gtcgggctgc 22980
+ cggttcgtgg cgctgtcctg acggtgtata tcggctggaa aggttttgcc ctggtatgca 23040
+ aagggaaatt taccgttgat gaggttgaac accggggcgc accggatgta gtcaccatcc 23100
+ gcgcccggag tgcagatttt cgcgggacgc tcaattcccg ccgggaaggc tcctggcatg 23160
+ acaccacgct cggtgcgatt gttaaggcga tagccacccg taacaggctg gaagccagtg 23220
+ tcgctccgtc actggccgga ataaaaattc cacacatcga ccagtcgcag gagtctgatg 23280
+ cgaaattcct gacccgtctt gcagaacgca acggcggtga ggtgtcggta aaaatgggaa 23340
+ aactgttgtt tctcaaagcg gggcagggag tgacggccag cggtaaaaaa atcccgcagg 23400
+ tcaccataac ccgcagcgac ggcgaccgcc atcattttgc gattgctgac cgtggagcct 23460
+ acaccggtgt aacggcaaaa tggctacaca ctaaagaccc gaagccgcaa aagcagaagg 23520
+ taaaactgaa acgcaaaaag aaagagaaac acctgcgcgc actggagcac ccgaaagcga 23580
+ aaccggtcag gcagaagaaa gcgcctaaag taccggaagc gcgtgaaggt gaatacatgg 23640
+ ccggtgaggc tgacaacgtt tttgccctga ccacggtata tgccacgaaa gcgcaggcca 23700
+ tgcgcgccgc tcaggcgaag tgggataaac tgcaacgggg cgttgcggag ttctctatca 23760
+ gcctggctac cggtcgggca gatatttaca cggaaacacc ggtcaaagtg tctggcttta 23820
+ agcgcgtcat agacgagcag gactggacaa tcactaaggt gacacatttt ctgaataata 23880
+ gcggcttcac gacgtcctta gagcttgagg tcaggctttc tgatgtggag tacgaaacag 23940
+ aagatgatga gtgatgtttt tgttttatct gtttgttttg taaggataaa ttaactaaaa 24000
+ tggcaccatc aacaaaaccg gaagaggtgc tcgcgatgtt tcattgtcct ttatgccagc 24060
+ atgccgcaca tgcgcgtaca agtcgctata tcactgacac gacaaaagag cgttatcatc 24120
+ agtgccagaa cgtgaattgc agcgccacgt tcatcactta tgagtcggta cagcgataca 24180
+ tcgtgaagcc gggagaagtc cacgccgtaa ggccgcaccc gttgccatca gggcagcaaa 24240
+ ttatgtggat gtaattacaa acagaaagcc cctcagtcga ggggcttttt tgtcgatgtg 24300
+ gtcaatgtgt ggacgtgacc agaaataaat ccttttattt caatttattg tacgtaaaaa 24360
+ ataagcccgt gtaagggaga tttagggtgt caccagtagg ggctttcaac ggtacaatgc 24420
+ gggtttgagc ggcataaatt accactgaaa gcccttaaac gttactctac tgtggacact 24480
+ gtgtggacac tctcggcctc agtaccacct cttagcggat taagagaaat ggcgtcctga 24540
+ aggtactctg gcgcaaaatg agcgtaaacc atagtttgct caatccgcgt gtgacctagt 24600
+ atccgttgta gcgtgataat acttcctcca ttaatcatga aatgagtggc aaagctgtgc 24660
+ cttagtgcat gtgtggcttg ccccattggc aaatccggtt ttattgcttt cattgttcgt 24720
+ ctgaagcgag ggtaatcagc atcagggaat aaaaaacctc gtttgttatc cgcgatcatt 24780
+ ttggcaacag cctctgagat cgggacggtg cgtggtttgt ttgttttcgt tttaacaaac 24840
+ gtgacgcggt tatggatgat attttctgct ttcaaacgag ctgcttctcc ccaacgtgct 24900
+ cctgtactca ggcaaagaat cgcaatcttt ttattgtcgc cgtcaagtgc tgcaagcagt 24960
+ aaggcaattt cttcctgtgt tagatagcct gtttctggtt tttcctcctt aagccttttt 25020
+ gtccctctga tagggtgctc accaaagaat aactccgctt caatcagggc tgtaaacatg 25080
+ ccgctaatac atgttaaatc acgattgata ctcgaaggtt taataccctg acttcttcgg 25140
+ gtggcgcagt actggctgat aagcgatttc gtaatttgaa atgcgcatgg gtcattcgtt 25200
+ atttttgtga agatttcaat ttttccaaga ttagatttcc catgctcttc gtgtttaccc 25260
+ tttaaatccc accagatctg tgtcagctcc gacagacgtc gcttgtctgt tggttttgat 25320
+ agccattctt tattgtggtg gttgtacaac gtgtatttct cgaaagcgac agcttcgctt 25380
+ ttcttatcaa acttcctacg gatgcgtttt ccattacgtc cagtagggcg gatgtccact 25440
+ tcatatcgac catcatcgag ttttttgatt gccatcagaa aaccctccga gtggtgtgtt 25500
+ tttttgcgac tactaatcgc ttttttcgtg gtggctgaaa tttagccacc aatagtaggc 25560
+ acttgtgatg aatatattca cgatgaattg ttaaccagtc ttttgaccgg agtggggcga 25620
+ cgttgtttcg ttttgcccaa agtgtgcgag agcgggcgca atttgcccgg actcaggagc 25680
+ gatctgattg gtcatgaacc ataaagtgta tttggtgaat tgtggggtct gcaggatgtt 25740
+ catcatgaca tctgttggag gtgttgaacg accactttca tagtaactca gcgtgccata 25800
+ cggaacccct gttaaatcag caagttgttg tctgctcaaa tactctgatt ttcgcattaa 25860
+ gactatcttc tcgcttatcg tgtttgacat ggtgtttaga tctcaatagt atttagttta 25920
+ gatgtagatt gtttagtgct tggatgtggg cactaaaagg cattataaga cattaaacgc 25980
+ aattcatgag ggctagagga cgacatgagc aagcaagtaa cactcatgac tgatgcgatt 26040
+ ccttatcagg agttcgcaaa actaatagga aaatcgacag gagcggttcg tcggatgatc 26100
+ gataaaggaa agctgcctgt aattgatatg accgatccac aatcagcttc aggtcgtgca 26160
+ ggtgaatatt gggtatacct tccggcatgg aataacggac taaaactggc ttatgaaagc 26220
+ cgccctaaag agattcgtga cggctggttg atgtggttag gtctcggtga accacgttaa 26280
+ ggagaaccgt atgaatgagc ctcgttgtat tgctcagtta ctgcgtaacg aaagccccag 26340
+ ggcgattgac ttcaccatca cccacggtaa ggggcgtaag ggaatcatta tccgcaccaa 26400
+ aaaacagagt ccgttaaaaa aggctctgac ctttctgaaa agccggaggg tatggaaatg 26460
+ acagtgatga cgctcaatct cgttgaaaaa cagccagcag ctatgcgccg gataattggt 26520
+ aagcatcttg ccgttcctcg ctggcaggat acatgtgatt attataatca gatgatggag 26580
+ cgcgaacggt taacggtttg cttccatgct cagttaaaac agcgtcacgc aacgatgtgt 26640
+ tttgaagaaa tgaacgacgt cgaacgtgaa cgactggtat gtgcaattga tgaattgcgt 26700
+ ggtgcattct caaaacgccg tcaggttggc gcaagtgagt atgcatatat tagtttttta 26760
+ acagtcagtc agcgtcgtac tttatttatg catgccggat tgactgaaaa agaattcaac 26820
+ cagccatact ggcgaattaa tgaagagtca tgttactggc gtgatgcttt attccgtgca 26880
+ ttacgtgaat tattcagtct gtttgagtat gcaccgacaa ttctgacgtc ggtaaaaccg 26940
+ gagcaatatc tgcattaagt aattaaccag agtttttaac gcacttaatt gtgcggggct 27000
+ tctttttgcc tggagaaagt tatgcataca gtttctgaaa atcagtgcgg tatatacgca 27060
+ ttactgctgc aacaggccag aaccgaagca caggccgacg ctgcgacgcg cttttcttct 27120
+ catcttgatg ccatgattcg ccacatcaca aaggcggagt tatcccgcgt ggagatagtc 27180
+ gagctgctca gtcaggagtc ggaaaaattt cacaatatcg gattgtctcg cggggaggtg 27240
+ ctttgatgtt ctgttctcgt gcagttgtat tactgaataa cgccttaaaa atcgccgtta 27300
+ tgaaaaatgg cgatttgtct cttattcaac ttggtcttga taaagaaaaa cgcgaaataa 27360
+ ctgaatctgt tatcgcgatt tatcagagtg aattaaacct cctgtctgat gtggtcaatt 27420
+ tacttgttaa acgcgctgta tttcacaagc aaatttcctc cgtggatgaa ctgacgaaat 27480
+ taacgacaga aatcgccagc tattgcgctg atgaatttaa aaaactgaac gacaaaagga 27540
+ actggtaatg ccggacaacg tagattttat tcaggaacaa caggctgaat tactggagcg 27600
+ ccagattaac gcggcaaggg taaaacattg cggtgcttct gcgctggttt gcgaagagtg 27660
+ tgacgcgcca atacctgctg cccgtcgtgc ggcttacccg tcagccacgc gttgtgtttc 27720
+ ctgtcagtca gtctttgaag caaaaaacaa acattaccgg agaacggcat gagtattcgt 27780
+ attgaaattg gcgaacgtta tgtcgttacc agtgacagct ttcagtttat tctccacgag 27840
+ aaaaagagag cggaaagcgg taaaaacgcc ggtcaggaat ggctggcggt ggttggttat 27900
+ tacccgaaat taagccagct cgtttcaggc ctgatgcatc acgatattct gaccggaagc 27960
+ gcaaagtctt ttgctgattt aaacgtgcag gttgagcaac tcagcaagcg ttgttcagag 28020
+ gcttttggct catatggccg ttaaagcctc cgggcgtttt gtccctccgt cagcatttgc 28080
+ cgcaggcacc ggtaagatgt ttaccggtgc ttatgcatgg aacgcgccac gcgaggccgt 28140
+ cgggcgcgaa agacccctta cacgtgacga gatgcgtcag atgcaaggtg ttttatccac 28200
+ gattaaccgc ctgccttact ttttgcgctc gctgtttact tcacgctatg actacatccg 28260
+ gcgcaataaa agcccggtgc acgggtttta tttcctcaca tccacttttc agcgtcgttt 28320
+ atggccgcgc attgagcgtg tgaatcagcg ccatgaaatg aacaccgacg cgtcgttgct 28380
+ gtttctggca gagcgtgacc actatgcgcg cctgccggga atgaatgaca aggagctgaa 28440
+ aaagtttgcc gcccgtatct catcgcagct tttcatgatg tatgaggaac tcagcgatgc 28500
+ ctgggtggat gcacatggcg aaaaagaatc gctgtttacg gatgaggcgc aggctcacct 28560
+ ctatggtcat gttgctggcg ctgcacgtgc tttcaatatt tccccgcttt actggaaaaa 28620
+ ataccgtaaa ggacagatga ccacgaggca ggcatattct gccattgccc gtctgtttaa 28680
+ cgatgagtgg tggactcatc agctcaaagg ccagcgtatg cgctggcatg agacgttact 28740
+ gattgctgtc ggggaggtga ataaagaccg ttctccttat gccagtaaac atgccattcg 28800
+ tgatgtgcgt gcacgccgcc aagcaaatct ggaatttctt aaatcgtgtg accttgaaaa 28860
+ cagggaaacc ggcgagcgca tcgaccttat cagtaaggtg atgggcagta tttctaatcc 28920
+ tgaaattcgc cggatggagc tgatgaacac cattgccggt attgagcgtt acgccgccgc 28980
+ agagggtgat gtggggatgt ttatcacgct taccgcgcct tcaaagtatc acccgacacg 29040
+ tcaggtcgga aaaggcgaaa gtaaaaccgt ccagctaaat cacggctgga acgatgaggc 29100
+ atttaatcca aaggatgcgc agcgttatct ctgccatatc tggagcctga tgcgcacggc 29160
+ attcaaagat aatgatttac aggtctacgg tttgcgtgtc gtcgagccac accacgacgg 29220
+ aacgccgcac tggcatatga tgcttttttg taatccacgc cagcgtaacc agattatcga 29280
+ aatcatgcgt cgctatgcgc tcaaagagga tggcgacgaa agaggagccg cgcgaaaccg 29340
+ ttttcaggca aaacacctta accagggcgg tgctgcgggg tatatcgcga aatacatctc 29400
+ aaaaaacatc gatggctatg cactggatgg tcagctcgat aacgataccg gcagaccgct 29460
+ gaaagacact gctgcggctg ttaccgcatg ggcgtcaacg tggcgcatcc cacaatttaa 29520
+ aacggttggt ctgccgacaa tgggggctta ccgtgaacta cgcaaattgc ctcgcggcgt 29580
+ cagcattgct gatgagtttg acgagcgcgt cgaggctgca cgcgccgccg cagacagtgg 29640
+ tgattttgcg ttgtatatca gcgcgcaggg tggggcaaat gtcccgcgcg attgtcagac 29700
+ tgtcagggtc gcccgtagtc cgtcggatga ggttaacgag tacgaggaag aagtcgagag 29760
+ agtggtcggc atttacgcgc cgcatctcgg cgcgcgtcat attcatatca ccagaacgac 29820
+ ggactggcgc attgtgccga aagttccggt cgttgagcct ctgactttaa aaagcggcat 29880
+ cgccgcgcct cggagtcctg tcaataactg tggaaagctc accggtggtg atacttcgtt 29940
+ accggctccc acaccttctg agcacgccgc agcagtgctt aatctggttg atgacggtgt 30000
+ tattgaatgg aatgaaccgg aggtcgtgag ggcgctcagg ggcgcattaa aatacgacat 30060
+ gagaacgcca aaccgtcagc aaagaaacgg aagcccgtta aaaccgcatg aaattgcacc 30120
+ atctgccaga ctgaccaggt ctgaacgatt gcagatcacc cgtatccgcg ttgaccttgc 30180
+ tcagaacggt atcaggcctc agcgatggga acttgaggcg ctggcgcgtg gagcaaccgt 30240
+ aaattatgac gggaaaaaat tcacgtatcc ggtcgctgat gagtggccgg gattctcaac 30300
+ agtaatggag tggacatgat ggcaaaaatt cacgaggtaa agctgcacgc aaaatatttc 30360
+ gaccttgtac tggaaggaaa gaaacgcgca gagtttcgga aaaaagatcg taattatgag 30420
+ cgcggggaca cgttgatttt gcatgaatgg gtgcagggtg tgtttacggg gcgaaaggtt 30480
+ gaagcccgga taacagatgt tactgacctg tcagactggc tggaagatta tgtcttgctg 30540
+ cacagaatac taggtgagat actgccgctg actgtcaagc tggcagtatc ctccacattt 30600
+ tttataaatc taaggcgaag aacggtggca atatatttgc tttaaattgt aaataagcaa 30660
+ attattctaa gccacaaatg atatcaattg agtatcgatt ttcgttcgaa tataaccata 30720
+ acgccaagcg tcaaatgtaa gtcatctata tgtgattcgt attcatattg gtcagcatca 30780
+ ggagatagta aatgctctgc tgctgtaaaa acatcaattg taacagatat atcgtctgga 30840
+ atttcttcat ttaattcgga tatgtatttt ttatatttgt tttttaattt ccttatcatg 30900
+ tcttccttat ggtggattgt agtgcagtaa ttttttttag ttgaatcatt gtatgaatgg 30960
+ aatgaacagt ttaatgctag gccaagactt gaatttcctg tagggcctgt gtgtttaaag 31020
+ tattcaagat ttcttcttat gtcagaaaat aaaagacttt tacagggggc atttccttta 31080
+ acttctattg cacatattgg aatgtcgaaa aatggtctgc tgtccaatat ggcaatatca 31140
+ attctgcctg atcttgttgt gtttgtgttt tttctgacag ttttttttga gaatattttt 31200
+ tgggggtcag accgtttcga taaaggaact gttgcattaa tgaatttatt tgtatggtac 31260
+ tcaaatataa ctttgtaatc accatggcga aaagatttta tttctaacaa cgatagacct 31320
+ atagatacgg tagctacata ttcagtgttt atttttgcac cagacctgaa atccattaaa 31380
+ taagttgcgt cggctgactt tttcattcca tcttttacag ctttcacaat atccatgtta 31440
+ ttcatatcaa caccttttat attccagaat tataaatctt aatgattgat ttgtttgtgt 31500
+ gtttaggtta ctagattgac gtacttatag cacattctga ttttgaaatc accatccttg 31560
+ ggtaaagcac agcctatcac tattggttta gtactgtgct gtaatagtat cagattaagt 31620
+ taaatccatt ttatgaaatc ttccatttca tcatattttt ttattactgc tctaacatct 31680
+ ttgctttcat cacataaaca atctaaaaga ctatcccatt cagtttgttt tttaccaaat 31740
+ ccataaacag cctctatatc accggatttc catatataga ttccgttatc tttcaatttt 31800
+ tgatgtattt catgtatatg cttttgtgtt ttttcatggt tacatatttt gatgaagtct 31860
+ ttgcttgaaa tgcttttgaa tgactcaaaa gtagtaactt ttgtatttaa actaagctct 31920
+ cctgagttga ttgattcaat caaagcagtc aatagattat cacattcagt actaagtaag 31980
+ tctttatgct ctgttaatag aatatttgat aagaaatcac aatcagctag aatccttgtt 32040
+ tttatgccga tggcattgat gatttgtgac atcttaaata aactaccctt accgtcaacg 32100
+ gcaacaatgc agattttact cgggttgagt tcatgtccgt taattttttt ataaagtgca 32160
+ tatagaacgt ttgtctctgt tttcccttca acaagcaaaa cttcttcaga aaataaaagg 32220
+ tatgatgaat tagaaagcgt gaatgctgag tgcaattgcg gtgatgaaga tttatataat 32280
+ tcttcgattt tttcagatat agtcttcctt gctatggttc cattagaatc cttacaaacc 32340
+ tgaatcgcat ttgctgcatg ctttgcagaa agcatactgg ctgagtgagt tgatattata 32400
+ acctgatacc ctgattcact taatgtgaca agtgattctc tgacagaatt aatggctgaa 32460
+ gggtgtaaat ataactcagg ttcatcaatg aaaatcaaag tgtttgattt ttttgattcg 32520
+ ctgttttctt tttttatttc ggccaggtat tgaattaatg ccatttgaat ggaacgttgt 32580
+ gttccgtgac caaatcggct gatatctctc attaccggtt catcttcccg agactcaaaa 32640
+ actttcagag tgccggattt aaatatctca tctaatgtcg gtgtgggaaa gtgtaacttt 32700
+ acacttacgt caggaaaaaa ttggtttact tttttattta cacctgagtc tattttatta 32760
+ aggctttcta atctgttctc accgttgtga gaaagatatt tacctatttc tgatatgttt 32820
+ tttgaaaatt tttcttcgtg ttcttgtttt atttcagaaa caattgcgga aagtatcttt 32880
+ cctattgtgg tcgtgttttt gcattttgtt gagtcttcga cagcgtcaga cattgcaggg 32940
+ atatgaattg gttccggaaa tatattggag attgcaccat ctatgccgcc agggtttttc 33000
+ ttccacgtgg taccgtcata tacatccaga ctttttttgg cttttcctgt ttccttatta 33060
+ aattcctgtc ttcttgcaaa ggtaagagtc ccgtcaatta taaacggagc tattttttgt 33120
+ tgattctctt ctgttaacaa agacagagta tcatctgtta taccttgaat aacgccttca 33180
+ acggatacgg ggtgtgtagg atcgtacaca tctgattctg aaatcaaaga gccatctaac 33240
+ agccacttaa ttgctaagat aatatttgat tttcctgcgt tattataacc aactaaagca 33300
+ gtgaaggggc gcaaaatagc cgatgttgac ttacaagaac gaaagttgct aattgaaact 33360
+ gaagcaagac gtacagtcat tatttttcct taaatgtgct atttgtatgc aatgagttca 33420
+ tacgaaacgc ttttttacat tttatagtcg ttgcattcaa gggtgcatga gattgcatta 33480
+ agggaaactg tgatatggct tggcttttga ctggaaatac tgatggctca ttagttttat 33540
+ taaggtgcat taaaaccgcc ccgtgaagcg ggcgggcgag gcggggaaag cac 33593
+//
diff --git a/etc/af063097.fasta b/etc/af063097.fasta
new file mode 100644
index 000000000..8ed33789e
--- /dev/null
+++ b/etc/af063097.fasta
@@ -0,0 +1,561 @@
+>AF063097 AF063097 Bacteriophage P2, complete genome.
+ggcgaggcggggaaagcactgcgcgctgacggtggtgctgattgtattttttcagcgtct
+cagcgcgtcgtgacggcacttagtctgcccgttgaggcgttgtgtgtctgcggggtgttt
+tgtgcggtggtgagcgtgtgaggggggatgacggggtgtaaaaaagccgcccgcaggcgg
+cgatgttcagtcgttgtcagtgtccagtgagtagtttttaaagcggatgacctcctgacc
+gagccagccgtttatctcgcggatcctgtcctgtaacgggataagctcattgcggacaaa
+gacctttgccactttctcaatatcacccagcgacccgacgttctccggcttgccacccat
+caactgaaaggggatgcggtgcgcgtccagcaggtcagcggcgctggcttttttgatatt
+aaaaaaatcgtccttcgtcgccacttcactgagggggataattttaatgccgtcggcttt
+cccctgtggggcatagagaaacaggtttttaaagttgttgcggcctttcgacttgaccat
+gttttcgcgaagcatttcgatatcgttgcgatcctgcacggcatcggtgacatacatgat
+gtatccggcatgtgcgccattttcgtaatacttgcggcggaacaacgtggccgactcatt
+cagccaggcagagttaagggcgctgagatattccggcaggccgtacagctcctgattaat
+atccggctccagcaggtgaaacacggagccgggcgcgaaggctgtcggctcgttgaagga
+cggcacccaccagtaaacatcctcttccacgccacggcgggtatattttgccggtgaggt
+ttccagtctgatgaccttaccggtggtgctgtaacgcttttccagaaacgcattaccgaa
+caccagaaaatccagcacaaagcggctgaaatcctgctgggaaagccatggatgcgggat
+aaatgtcgaggccagaatattgcgtttgacgtaaatcggcgagctgtgatgcacggcagc
+ccgcaggctttttgccagaccggtaaagctgaccggtggctcataccatctgccgttact
+gatgcactcgacgtaatccagaatgtcacggcggtcgagtaccggcaccggctcaccaaa
+ggtgaatgcctccattttcgggccgctggcggtcattgtttttgccgcaggttgcggtgt
+tttcccttttttcttgctcatcagtaaaactccagaatggtggatgtcagcggggtgctg
+ataccggcggtgagtggctcatttaacagggcgtgcatggtcgcccaggcgaggtcggcg
+tggctggcttcctcgctgcggctggcctcataggtggcgctgcgtccgctgctggtcatg
+gtcttgcggatagccataaacgagctggtgatgtcggtggcgctgacgtcgtattccaga
+cagccacggcggataacgtcttttgccttgagcaccattgcggttttcatttccggcgtg
+tagcggatatcacgcgcggcgggatagaacgagcgcacgagctggaacacgccgacaccg
+aggccggtggcatcaataccgatgtattcgacgttgtatttttcggtgagtttgcggatg
+gattccgcctgggtggcaaagtccatgcctttccactggtgacgctcaagtattctgaat
+ttgccaccggccaccaccggcggtgccagtaccacgcatccggcgctgtcgccacggtgt
+gacgggtcgtaaccaatccataccgggcgggagccgaacggattggcggcaaacggcgca
+tagtcttcccattcttccagcgtgtcgaccatgcagcgttgcagctcctcgaacgggaac
+accgatgccttgtcgtcaacaaattcacacatgaacaggtttttaaaatcgtcggcgctg
+ttttcgcgtttgagctgctcaatgtcgaacagcgtgcagccgcctttcagggcgtcctca
+atggtgacaatctgtcgccactggccgtccgcacagagaagcccaccggcaagggcgtta
+tgactgacgtcgatttccacgcgttcggcggcgctggcgcgtccccggttaaacagttca
+cccgaccagaacgggtaggcgtcgtgcgccagcgtggacggggtggagaaataggtcgag
+cgcaggtgactctgtgaggccatacctgatgccaccttacgcagtacctgaaaattcggg
+atccagaaaatctcatcgacgtacaggtcgccgttatgactctgcgcggtgttggagttg
+gtgccgagaaaaatcagttttgcgccgttattgcccaggacaatcgggtcaccggtcagg
+tcaacgtcaaccagacgggcaaaggcgatgatgtattcgcggaacacatacgcctgtgtt
+ttactggccgacagaaaaatctggttatgaccggttttcagggcacgcagcagcgcctcg
+cgggaaaaataaaacgtcgcgccaatctggcgggatttcaggatatcgcggatgcggtgc
+tcaagcccggcacgataccagtgcagctgatagtcgaaagactgctcaaagaaaatctgc
+tccagcttttcgatggcctcgtcactgaaaaaattctttttcggtttgcgccgtccgcct
+ttgttacggttagcgacgttcggattaaggtctgcctcgttgccggtctggctgtagcgg
+ttgacccgtgccagtcgttcaatctggcgtcccagcaggtcaatttccttgaagtcaccg
+ccggttttctgtggtttgatgatgagctgggtcagccgcgcttccagactcatttcgaca
+cggctgatgggggcaacgctgtcccagccgtcgcgctgtttccagctctgcactgtcggg
+cgtttcatctgcaacatggcggcaatctgcggcacggaaaacccctgccagtacagcagc
+gccgcctgacgacgcgggtcgtgtaaaagagtggtgtctgtggtgatggtcatgaatacc
+tcgccgtgatgaatacacggcaaggctactgagtcgcgccccgcgattcgctaaggtgct
+gttgtgtcagtgataagccatccgggactgatggcggaggatgcgcatcgtcgggaaact
+gatgccgacatgtgactcctctaatcactattcaggactcctgacaatggcaaaaaaagt
+ctcaaaattctttcgtatcggcgttgagggtgacacctgtgacgggcgtgtcatcagtgc
+gcaggatattcaggaaatggccgaaacctttgacccgcgtgtctatggttgccgcattaa
+cctggaacatctgcgcggcatcctgcctgacggtatttttaagcgttatggcgatgtggc
+cgaactgaaggccgaaaagattgacgatgattcggcgctgaaaggcaaatgggcgctgtt
+tgcgaaaatcaccccgaccgatgaccttatcgcgatgaacaaggccgcgcagaaggtcta
+cacctcaatggaaattcagccgaactttgccaacaccggcaaatgttatctggtgggtct
+ggccgtcaccgatgacccggcaagcctcggcacggaatacctggaattctgccgcacggc
+aaaacacaaccccctgaaccgcttcaaattaagccctgaaaacctgatttcagtggcaac
+gcctgttgagctggaatttgaagacctgcctgaaaccgtgttcaccgccctgaccgaaaa
+ggtgaagtccatttttggccgcaaacaggccagcgatgatgcccgtctgaatgacgtgca
+tgaagcggtgaccgctgttgctgaacatgtgcaggaaaaactgagcgccactgagcagcg
+cctcgctgagatggaaaccgccttttctgcacttaagcaggaggtgactgacagggcgga
+tgaaaccagccaggcattcacccgcctgaaaaacagtctcgaccacaccgaaagtctgac
+ccagcagcgccgcagcaaagccaccggcggtggcggtgacgccctgatgacgaactgctg
+accggcgtcagtcagtccgggaaaaccttcacgattaacccttaatttcaggaaaaacta
+tgcgccaggaaacccgctttaaatttaatgcctacctgtcccgtgttgccgaactgaacg
+gcatcgacgccggtgatgtgtcgaaaaaattcaccgttgaaccgtcggtcacccagaccc
+tgatgaacaccatgcaggagtcctctgactttctgacccgcatcaatattgtgccggtca
+gcgaaatgaaaggggaaaaaattggtatcggtgtcaccggctccatcgccagcactaccg
+acactgccggtggtaccgagcgtcagccgaaggacttctcgaagctggcgtcaaacaagt
+acgaatgcgaccagattaacttcgatttttatatccgctacaaaacgctggacctgtggg
+cgcgttatcaggatttccagctccgtatccgtaacgccattatcaaacgccagtcccttg
+atttcatcatggccggttttaacggcgtgaagcgtgccgaaacctctgaccgcagcagca
+atccgatgttgcaggatgtggcggtcggctggctgcagaaataccgcaatgaagcaccgg
+cgcgcgtgatgagcaaggtcactgacgaggaaggccgcaccacctctgaggttatccgcg
+tgggtaagggcggtgattatgccagccttgatgcactggtgatggatgcgaccaacaacc
+tgattgaaccgtggtatcaggaagaccctgaccttgtggtgattgtggggcgtcagctac
+tggcggacaagtatttccccatcgtcaacaaggagcaggacaacagcgaaatgctggccg
+ctgacgtcatcatcagccagaaacgcatcggtaacctaccagcggtacgcgtcccgtact
+tcccggcggatgcgatgctcatcacgaagctggaaaacctgtccatctactacatggatg
+acagccatcgccgcgtgattgaggaaaacccgaaactcgaccgcgtggagaactacgagt
+caatgaacattgattacgtggtggaagactacgccgccggttgtctggtggaaaaaatca
+aggtcggtgacttctccacaccggctaaggcgaccgcagagccgggagcgtaaccgatga
+cgagtcccgcacagcgccacatgatgcgggtctcggcagcgatgaccgcgcagcgggaag
+ccgccccgctgcgacatgcaactgtctatgagcagatgctggttaagctcgccgcagacc
+agcgcacactgaaagcgatttactcaaaagagctgaaggccgcaaaaaaacgcgaactgc
+tgccgttctggttgccgtgggtgaacggcgtgctggagctgggcaaaggtgcacaggatg
+acattctgatgacggtcatgctgtggcgtctggataccggcgatattgccggtgcgctgg
+agattgcccgttatgccctgaagtacggtctgaccatgccgggtaaacaccgccgtaccc
+cgccgtacatgttcaccgaggaggtagcgcttgcggccatgcgcgctcacgctgccggtg
+agtctgtggatacccgcctgctgacggagacccttgaactgaccgccacggctgacatgc
+ctgatgaagtgcgcgcaaagctgcacaaaatcaccggtctgtttctgcgtgacggtggtg
+atgccgccggtgcgctggcgcacctgcaacgtgcgacacagctcgactgtcaggcaggcg
+tcaaaaaagagattgaacgactggagcgggagctgaaaccgaagccggagccgcagccca
+aagcggccacccgcgccccgcgtaagacccggagcgtgacaccggcaaaacgtggacgcc
+cgaaaaagaaagccagttaacaaccgaatgcgccccgcgccagggcggcacgccggtcag
+tgacggtgaatcacctgacactgcaccggcgtccaccgcccgacttttcagaggtagtca
+tgatgacgctgattattccgcgaaaggaggctcccgtgtccggtgagggtacggtggtca
+tcccgcaaccggcaggcgacgagccggtgattaaaaacacgttcttttttcccgatatcg
+acccgaagcgcgtccgggaacgtatgcgccttgagcagaccgtcgcccccgcccgtctgc
+gtgaggccatcaagtcaggcatggctgaaacgaatgcggagctgtacgagtaccgcgaac
+agaaaattgccgccggttttacgcgtctggctgacgtcccggcggacgatatcgacggtg
+aaagcatcaaggttttttactacgagcgcgccgtgtgtgcgatggcgaccgcgtcgcttt
+atgagcgttatcgcggtgtggatgccagtgcgaaaggcgacaagaaggctgacagcattg
+acagcaccattgatgagctgtggcgggatatgcgctgggcggtggcgcgcatccagggca
+agccgcgctgcatcgtgagtcaaatctgatgaagacctttgcgctacagggcgacacgct
+cgacgccatttgtgtccgctattacgggcgcactgagggcgtggttgagaccgtgctcgc
+cgcaaatccgggactggctgaactgggggcggtgctgccacacggcaccgccgtcgaact
+gcccgacgttcagaccgcgcccgtggctgaaactgtcaatctgtgggagtaacgcatgac
+agcagaagaaaaaagcgtcctgtcgcttttcatgattggggtgctgattgttgtcggcaa
+ggtgcttgccggtggtgaacctatcaccccgcgtctgtttatcgggcgcatgttgctcgg
+tggttttgtctcgatggttgccggtgttgttctggtgcagtttcctgacctgtcactgcc
+agcggtgtgcggcatcggctccatgctgggtatcgccggttatcaggtgattgagattgc
+cattcagcgccgctttaagggcagggggaaacagtaatgccggtaattaacacgcatcag
+aatatcgccgcctttctcgacatgctggccgtgtccgaagggacggcgaatcatccactg
+acgaaaaaccggggctatgacgtgatagtcaccggactggacgggaagccggaaattttc
+accgactacagtgaccacccgttcgcacatggccgaccggcgaaggtgtttaaccgtcgc
+ggtgaaaaatccacggcctccggtcgctatcagcagctttacctgttctggccgcattac
+cgcaaacagcttgccctgccggatttcagtccgttgtcacaggacagactcgccattcag
+ttgatccgcgaacgcggagcactggatgacatccgggcgggacgcattgagcgcgccatt
+tcacgctgtcgcaatatctgggcgtccctgccgggtgccggttacggtcagcgtgagcat
+tcactggaaaaactggtcaccgtctggcgtaccgctggcggcgtaccggcttaaacggag
+taaataccatgaagaaattatccctttcactgatgctgaacgtgtcgctggcgctgatgc
+tggcactgtccctgatttacccgcagagcgtggccgtcaattttgtcgctgcctgggcga
+ttctggcgacggttatctgtgtggttgccggtggtgtgggcgtgtatgccactgagtatg
+tgctggaacgctacgggcgggagctgccgccggaatcgctggccgtgaagattgtcacgt
+cgctgtttttgcagccggtgccgtggcgcagacgggcggcggctctggtagtggtggtgg
+cgacgtttatctcgctggtcgctgccgggtggatttttaccgcgctgatttatcttgtgg
+tgtcgctgtttttccggctgatacgtaaagcctgtcgtcagcgtcttgaggggcgggaac
+catgtcaaggctgatgattgtgctggtcgtgttgttatcgctggcggtggccggtctgtt
+tctggtgaaacacaaaaatgccagcctgcgcgcctcgctggacagggcgaacaacgtcgc
+cagcggtcagcagacgaccatcaccatgctgaaaaatcagcttcatgttgcgctcaccag
+ggcagataaaaacgagctggcgcaggtggcactgcgtcaggaactggagaacgccgcgaa
+acgtgaagcacagcgcgagaaaaccatcacgaggttacttaatgagaacgaagattttcg
+ccgctggtacggtgctgacctgcctgatgctgtgcgccggttgcaccagcgccccgcctg
+caccgacgccagtgattgtccccaacgcatgcccgaaagtgagcctttgcccgatgccgg
+gcagtgacccgcagacgaacggcgatttaagtgccgatatccggcagcttgagaacgcgc
+tggcacgctgtgccagccaggtaaaaatgattaaacactgtcaggacgaaaacgatgctc
+aaacccgacagcctgcgcagggcgctgactgatgccgtcacggtgctgaaaactaacccc
+gatatgctgcggatattcgtggataacgggagtattgcctccacactggcggcgtcgctg
+tcattcgaaaagcgttacacgctcaatgtgattgtgaccgactttaccggtgattttgac
+ctgctcattgtgccggtgctggcgtggctgcgggaaaatcagcccgacatcatgaccacc
+gacgaaggccagaaaaagggcttcacgttttatgcagacatcaacaatgacagcagcttt
+gatatcagtatcagcctgatgctgaccgagcgcacgctggtcagtgaggtggacggcgca
+ctgcatgtgaagaatatctcggaacccccgccgccggagccggtcacccgcccgatggag
+ctgtatatcaatggcgaactggtgagtaagtgggatgaatgagtttaagcgttttgaaga
+ccggctgaccggactgattgaatcgctgtcaccgtcagggcgtcggcgactgagtgccga
+actggcgaaacgtctgcggcagagtcagcagcgtcgggtgatggcacagaaagccccgga
+cggcacaccctacgcgccacgccagcagcagagcgtcagaaaaaagaccggtcgcgttaa
+gcgaaaaatgtttgcgaaacttattaccagtcgttttttgcatatccgtgccagcccgga
+gcaggcatcaatggaattttacggcgggaagtcgccgaaaatcgccagtgtgcatcagtt
+tggtctgtcggaagaaaaccggaaagacggtaagaaaattgattatccggcgcgtcccct
+gctcggctttaccggtgaggatgtgcagatgattgaagagattatcctggctcaccttga
+gcgttagttttatccaggcagaggctgatgcgcaattaaacattgagcggccatgctggt
+cgctcaatgtttagaggtttatgagtgatttttatttgatgctttgtattctaaaacctt
+cttattggcgtaaaagaattttgtatatgacaggaatataaccagacctgaagtgaaata
+gacgagggatagtattaataatgcttttttgtgactgttattatctttaatctcctggct
+taaccattcggagtcctcctcgtttagctgtaagagcttattgcaggcgatctcaggaag
+tgtgtcttttataaatacgttttgcagtctcttgcaatcggcaaggctataagttttatt
+aaattcaactgctttatttttgaaggataaaagaactttgtcactataaacatagtacat
+catgtttttatatggtatgcctgtggcatcccttactataacggattgttcgttgtgtat
+gtaacatgcgaggagaatgtaaaaaatactggccagaattacaattattgttttaattat
+gtgtggtggttttgttatgtcaccccagatacgagtaaggaaaaaatacgatgtttttag
+ttttccatcaatcagtccctgctgtatcattctcacattttcaatgcctgatacattgat
+tccgttaattattttaaatagttgaatgtcgcgccactcgcggtcaagtctttttaattt
+tttgtctgaatatccaaaattgaaataatgtgcaataagcctcataaggttacttttacc
+aaagctaaaaaatgctaatactgcaaagctacaaaggaaaaaaacgattagcccccacac
+attagtcacattatagctgaccattacgctctccttgaatgttgtctggtagttctacaa
+atgaatccagatagcataacttttatatattgtgcaatctcacatgcatgaacactctcg
+caaatattcaggaactcgcgcgcgcactgcgcaacatgattcgcactggcattatcgtcg
+aaaccgaccttaacgccggtcgctgccgcgtgcagaccggcggcatgtgcaccgactggc
+ttcagtggctgacccatcgcgcaggacgttcgcgcacatggtgggcaccttccgtggggg
+aacaggtgctgattctggccgtgggtggtgaactcgacacggcgttcgttctgccgggga
+tttattccggcgataacccctcgccgtctgtgtcggcggatgccctgcatatccgtttcc
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+acacttacgtcaggaaaaaattggtttacttttttatttacacctgagtctattttatta
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+aattcctgtcttcttgcaaaggtaagagtcccgtcaattataaacggagctattttttgt
+tgattctcttctgttaacaaagacagagtatcatctgttataccttgaataacgccttca
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+gtgaaggggcgcaaaatagccgatgttgacttacaagaacgaaagttgctaattgaaact
+gaagcaagacgtacagtcattatttttccttaaatgtgctatttgtatgcaatgagttca
+tacgaaacgcttttttacattttatagtcgttgcattcaagggtgcatgagattgcatta
+agggaaactgtgatatggcttggcttttgactggaaatactgatggctcattagttttat
+taaggtgcattaaaaccgccccgtgaagcgggcgggcgaggcggggaaagcac
diff --git a/etc/af063097_v_b132222.crunch b/etc/af063097_v_b132222.crunch
new file mode 100644
index 000000000..b89fbf8e8
--- /dev/null
+++ b/etc/af063097_v_b132222.crunch
@@ -0,0 +1,199 @@
+76 50.00 207 440 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 201 434 AF063097 AF063097 Bacteriophage P2, complete genome.
+373 52.00 208 1179 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 202 1173 AF063097 AF063097 Bacteriophage P2, complete genome.
+423 65.00 224 1165 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 218 1159 AF063097 AF063097 Bacteriophage P2, complete genome.
+90 71.00 999 1163 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 993 1157 AF063097 AF063097 Bacteriophage P2, complete genome.
+46 29.00 1665 1958 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 2328 2621 AF063097 AF063097 Bacteriophage P2, complete genome.
+104 70.00 1978 2127 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1241 1390 AF063097 AF063097 Bacteriophage P2, complete genome.
+666 77.00 2103 3284 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1366 2547 AF063097 AF063097 Bacteriophage P2, complete genome.
+204 66.00 3360 3794 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 2623 3057 AF063097 AF063097 Bacteriophage P2, complete genome.
+571 81.00 3881 4750 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3152 4021 AF063097 AF063097 Bacteriophage P2, complete genome.
+651 76.00 4814 5872 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4068 5126 AF063097 AF063097 Bacteriophage P2, complete genome.
+214 82.00 5895 6236 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5154 5495 AF063097 AF063097 Bacteriophage P2, complete genome.
+148 67.00 6243 6545 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5508 5810 AF063097 AF063097 Bacteriophage P2, complete genome.
+525 58.00 2135 3361 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1398 2624 AF063097 AF063097 Bacteriophage P2, complete genome.
+143 57.00 3446 3793 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 2709 3056 AF063097 AF063097 Bacteriophage P2, complete genome.
+210 69.00 3883 4326 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3154 3597 AF063097 AF063097 Bacteriophage P2, complete genome.
+44 47.00 4378 4542 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3649 3813 AF063097 AF063097 Bacteriophage P2, complete genome.
+54 53.00 4582 4722 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3853 3993 AF063097 AF063097 Bacteriophage P2, complete genome.
+49 61.00 2173 2286 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1436 1549 AF063097 AF063097 Bacteriophage P2, complete genome.
+271 53.00 2476 3234 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1739 2497 AF063097 AF063097 Bacteriophage P2, complete genome.
+67 49.00 3640 3867 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 2903 3130 AF063097 AF063097 Bacteriophage P2, complete genome.
+226 54.00 3915 4544 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3186 3815 AF063097 AF063097 Bacteriophage P2, complete genome.
+53 48.00 4581 4763 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3852 4034 AF063097 AF063097 Bacteriophage P2, complete genome.
+94 61.00 5178 5393 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4432 4647 AF063097 AF063097 Bacteriophage P2, complete genome.
+91 35.00 5424 5879 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4678 5133 AF063097 AF063097 Bacteriophage P2, complete genome.
+140 52.00 5860 6246 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5119 5505 AF063097 AF063097 Bacteriophage P2, complete genome.
+45 36.00 6355 6555 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5620 5820 AF063097 AF063097 Bacteriophage P2, complete genome.
+73 57.00 5182 5388 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4436 4642 AF063097 AF063097 Bacteriophage P2, complete genome.
+68 52.00 5542 5727 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4796 4981 AF063097 AF063097 Bacteriophage P2, complete genome.
+129 58.00 5885 6229 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5144 5488 AF063097 AF063097 Bacteriophage P2, complete genome.
+290 65.00 6734 7306 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5997 6569 AF063097 AF063097 Bacteriophage P2, complete genome.
+137 44.00 6792 7301 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6055 6564 AF063097 AF063097 Bacteriophage P2, complete genome.
+59 54.00 6826 6993 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6089 6256 AF063097 AF063097 Bacteriophage P2, complete genome.
+167 61.00 7078 7449 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6341 6712 AF063097 AF063097 Bacteriophage P2, complete genome.
+188 90.00 7452 7721 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6716 6985 AF063097 AF063097 Bacteriophage P2, complete genome.
+390 90.00 7699 8232 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6961 7494 AF063097 AF063097 Bacteriophage P2, complete genome.
+130 63.00 7442 7714 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6706 6978 AF063097 AF063097 Bacteriophage P2, complete genome.
+151 47.00 7725 8231 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6987 7493 AF063097 AF063097 Bacteriophage P2, complete genome.
+131 66.00 7453 7713 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6717 6977 AF063097 AF063097 Bacteriophage P2, complete genome.
+108 50.00 7721 8035 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6983 7297 AF063097 AF063097 Bacteriophage P2, complete genome.
+58 60.00 8090 8224 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 7352 7486 AF063097 AF063097 Bacteriophage P2, complete genome.
+413 50.00 8286 9500 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 7991 9205 AF063097 AF063097 Bacteriophage P2, complete genome.
+177 72.00 8485 8775 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 8190 8480 AF063097 AF063097 Bacteriophage P2, complete genome.
+259 57.00 8573 9220 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 8278 8925 AF063097 AF063097 Bacteriophage P2, complete genome.
+71 43.00 9471 9659 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 9179 9367 AF063097 AF063097 Bacteriophage P2, complete genome.
+335 68.00 9720 10343 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10299 10922 AF063097 AF063097 Bacteriophage P2, complete genome.
+161 63.00 10367 10681 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10940 11254 AF063097 AF063097 Bacteriophage P2, complete genome.
+844 62.00 10778 12718 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 11349 13289 AF063097 AF063097 Bacteriophage P2, complete genome.
+66 44.00 9826 10089 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10405 10668 AF063097 AF063097 Bacteriophage P2, complete genome.
+78 49.00 10138 10353 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10717 10932 AF063097 AF063097 Bacteriophage P2, complete genome.
+54 45.00 10369 10590 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10942 11163 AF063097 AF063097 Bacteriophage P2, complete genome.
+55 52.00 9968 10117 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10547 10696 AF063097 AF063097 Bacteriophage P2, complete genome.
+53 42.00 10317 10553 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10890 11126 AF063097 AF063097 Bacteriophage P2, complete genome.
+74 44.00 10725 10985 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 11296 11556 AF063097 AF063097 Bacteriophage P2, complete genome.
+64 49.00 11040 11255 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 11611 11826 AF063097 AF063097 Bacteriophage P2, complete genome.
+140 45.00 10735 11256 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 11306 11827 AF063097 AF063097 Bacteriophage P2, complete genome.
+506 68.00 11340 12266 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 11911 12837 AF063097 AF063097 Bacteriophage P2, complete genome.
+149 49.00 12378 12908 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 12949 13479 AF063097 AF063097 Bacteriophage P2, complete genome.
+650 66.00 11575 12915 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 12146 13486 AF063097 AF063097 Bacteriophage P2, complete genome.
+57 65.00 12664 12783 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 13367 13486 AF063097 AF063097 Bacteriophage P2, complete genome.
+50 49.00 12964 13080 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 13859 13975 AF063097 AF063097 Bacteriophage P2, complete genome.
+99 60.00 13794 14018 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 15011 15235 AF063097 AF063097 Bacteriophage P2, complete genome.
+89 41.00 14145 14480 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 17614 17949 AF063097 AF063097 Bacteriophage P2, complete genome.
+89 49.00 14149 14415 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 17618 17884 AF063097 AF063097 Bacteriophage P2, complete genome.
+77 45.00 14442 14687 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 17920 18165 AF063097 AF063097 Bacteriophage P2, complete genome.
+210 79.00 14153 14488 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 17622 17957 AF063097 AF063097 Bacteriophage P2, complete genome.
+596 82.00 14468 15358 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 17946 18836 AF063097 AF063097 Bacteriophage P2, complete genome.
+290 68.00 15377 15892 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 18855 19370 AF063097 AF063097 Bacteriophage P2, complete genome.
+77 67.00 14617 14763 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 18095 18241 AF063097 AF063097 Bacteriophage P2, complete genome.
+306 52.00 14814 15746 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 18292 19224 AF063097 AF063097 Bacteriophage P2, complete genome.
+46 57.00 15774 15893 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19252 19371 AF063097 AF063097 Bacteriophage P2, complete genome.
+88 63.00 14881 15051 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 18359 18529 AF063097 AF063097 Bacteriophage P2, complete genome.
+137 58.00 15154 15495 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 18632 18973 AF063097 AF063097 Bacteriophage P2, complete genome.
+43 42.00 15637 15795 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19115 19273 AF063097 AF063097 Bacteriophage P2, complete genome.
+197 53.00 16019 16588 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19429 19998 AF063097 AF063097 Bacteriophage P2, complete genome.
+58 36.00 16685 17026 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20095 20436 AF063097 AF063097 Bacteriophage P2, complete genome.
+262 55.00 17029 17754 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20442 21167 AF063097 AF063097 Bacteriophage P2, complete genome.
+87 46.00 17794 18045 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 21207 21458 AF063097 AF063097 Bacteriophage P2, complete genome.
+176 69.00 16032 16367 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19442 19777 AF063097 AF063097 Bacteriophage P2, complete genome.
+276 63.00 16401 16988 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19811 20398 AF063097 AF063097 Bacteriophage P2, complete genome.
+602 78.00 17025 18032 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20438 21445 AF063097 AF063097 Bacteriophage P2, complete genome.
+310 67.00 18108 18650 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 21521 22063 AF063097 AF063097 Bacteriophage P2, complete genome.
+141 78.00 18657 18875 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22073 22291 AF063097 AF063097 Bacteriophage P2, complete genome.
+231 60.00 18891 19343 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22312 22764 AF063097 AF063097 Bacteriophage P2, complete genome.
+477 75.00 19373 20152 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22791 23570 AF063097 AF063097 Bacteriophage P2, complete genome.
+186 72.00 20213 20536 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23628 23951 AF063097 AF063097 Bacteriophage P2, complete genome.
+133 63.00 20609 20827 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 24036 24254 AF063097 AF063097 Bacteriophage P2, complete genome.
+172 47.00 16231 16806 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19641 20216 AF063097 AF063097 Bacteriophage P2, complete genome.
+47 43.00 16828 17016 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20238 20426 AF063097 AF063097 Bacteriophage P2, complete genome.
+243 49.00 17153 17881 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20566 21294 AF063097 AF063097 Bacteriophage P2, complete genome.
+186 44.00 17924 18643 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 21337 22056 AF063097 AF063097 Bacteriophage P2, complete genome.
+68 54.00 18664 18876 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22080 22292 AF063097 AF063097 Bacteriophage P2, complete genome.
+108 45.00 19794 20204 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23212 23622 AF063097 AF063097 Bacteriophage P2, complete genome.
+146 53.00 19798 20181 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23216 23599 AF063097 AF063097 Bacteriophage P2, complete genome.
+49 54.00 20304 20447 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23719 23862 AF063097 AF063097 Bacteriophage P2, complete genome.
+56 48.00 21451 21630 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 24517 24696 AF063097 AF063097 Bacteriophage P2, complete genome.
+85 49.00 24663 24875 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 27545 27757 AF063097 AF063097 Bacteriophage P2, complete genome.
+120 55.00 25471 25728 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 27769 28026 AF063097 AF063097 Bacteriophage P2, complete genome.
+88 39.00 27293 27568 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 28592 28867 AF063097 AF063097 Bacteriophage P2, complete genome.
+78 55.00 27563 27763 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 28865 29065 AF063097 AF063097 Bacteriophage P2, complete genome.
+89 43.00 27776 27982 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 29105 29311 AF063097 AF063097 Bacteriophage P2, complete genome.
+106 52.00 28001 28255 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 29315 29569 AF063097 AF063097 Bacteriophage P2, complete genome.
+84 42.00 28298 28594 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 29615 29911 AF063097 AF063097 Bacteriophage P2, complete genome.
+42 34.00 27999 28259 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 29313 29573 AF063097 AF063097 Bacteriophage P2, complete genome.
+64 40.00 28249 27989 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 29563 29303 AF063097 AF063097 Bacteriophage P2, complete genome.
+46 53.00 27909 27775 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 29238 29104 AF063097 AF063097 Bacteriophage P2, complete genome.
+42 30.00 27997 27785 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 29326 29114 AF063097 AF063097 Bacteriophage P2, complete genome.
+75 51.00 25724 25470 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 28022 27768 AF063097 AF063097 Bacteriophage P2, complete genome.
+51 38.00 25650 25468 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 27948 27766 AF063097 AF063097 Bacteriophage P2, complete genome.
+58 56.00 24874 24719 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 27756 27601 AF063097 AF063097 Bacteriophage P2, complete genome.
+56 45.00 22442 22284 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 25484 25326 AF063097 AF063097 Bacteriophage P2, complete genome.
+69 41.00 21869 21672 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 24938 24741 AF063097 AF063097 Bacteriophage P2, complete genome.
+116 59.00 21668 21447 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 24734 24513 AF063097 AF063097 Bacteriophage P2, complete genome.
+51 38.00 20805 20563 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 24232 23990 AF063097 AF063097 Bacteriophage P2, complete genome.
+123 52.00 20536 20192 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23951 23607 AF063097 AF063097 Bacteriophage P2, complete genome.
+375 66.00 20190 19387 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23608 22805 AF063097 AF063097 Bacteriophage P2, complete genome.
+142 53.00 19327 18890 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22748 22311 AF063097 AF063097 Bacteriophage P2, complete genome.
+92 56.00 18881 18657 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22297 22073 AF063097 AF063097 Bacteriophage P2, complete genome.
+225 61.00 18616 18107 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22029 21520 AF063097 AF063097 Bacteriophage P2, complete genome.
+523 71.00 18046 17036 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 21459 20449 AF063097 AF063097 Bacteriophage P2, complete genome.
+408 63.00 16966 16007 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20376 19417 AF063097 AF063097 Bacteriophage P2, complete genome.
+580 54.00 15892 14468 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19370 17946 AF063097 AF063097 Bacteriophage P2, complete genome.
+153 78.00 14418 14149 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 17887 17618 AF063097 AF063097 Bacteriophage P2, complete genome.
+74 57.00 20516 20295 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23931 23710 AF063097 AF063097 Bacteriophage P2, complete genome.
+95 75.00 20484 20305 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23899 23720 AF063097 AF063097 Bacteriophage P2, complete genome.
+236 43.00 20194 19361 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23612 22779 AF063097 AF063097 Bacteriophage P2, complete genome.
+82 47.00 20072 19797 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 23490 23215 AF063097 AF063097 Bacteriophage P2, complete genome.
+68 52.00 18874 18656 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22290 22072 AF063097 AF063097 Bacteriophage P2, complete genome.
+599 52.00 18650 17028 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22063 20441 AF063097 AF063097 Bacteriophage P2, complete genome.
+149 42.00 17015 16431 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20425 19841 AF063097 AF063097 Bacteriophage P2, complete genome.
+126 50.00 16388 16032 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19798 19442 AF063097 AF063097 Bacteriophage P2, complete genome.
+66 50.00 18873 18664 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22289 22080 AF063097 AF063097 Bacteriophage P2, complete genome.
+121 47.00 18651 18238 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 22064 21651 AF063097 AF063097 Bacteriophage P2, complete genome.
+88 52.00 18141 17884 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 21554 21297 AF063097 AF063097 Bacteriophage P2, complete genome.
+98 51.00 17751 17458 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 21164 20871 AF063097 AF063097 Bacteriophage P2, complete genome.
+121 56.00 17361 17038 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20774 20451 AF063097 AF063097 Bacteriophage P2, complete genome.
+190 44.00 16947 16207 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 20357 19617 AF063097 AF063097 Bacteriophage P2, complete genome.
+173 72.00 15888 15556 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19366 19034 AF063097 AF063097 Bacteriophage P2, complete genome.
+251 56.00 15572 14904 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 19050 18382 AF063097 AF063097 Bacteriophage P2, complete genome.
+302 78.00 15357 14824 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 18835 18302 AF063097 AF063097 Bacteriophage P2, complete genome.
+143 73.00 14748 14479 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 18226 17957 AF063097 AF063097 Bacteriophage P2, complete genome.
+125 52.00 14479 14144 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 17948 17613 AF063097 AF063097 Bacteriophage P2, complete genome.
+67 59.00 14750 14574 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 18228 18052 AF063097 AF063097 Bacteriophage P2, complete genome.
+50 45.00 12909 12763 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 13480 13334 AF063097 AF063097 Bacteriophage P2, complete genome.
+682 53.00 12694 10721 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 13265 11292 AF063097 AF063097 Bacteriophage P2, complete genome.
+123 55.00 10710 10366 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 11283 10939 AF063097 AF063097 Bacteriophage P2, complete genome.
+246 60.00 10297 9716 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10876 10295 AF063097 AF063097 Bacteriophage P2, complete genome.
+127 77.00 12746 12513 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 13317 13084 AF063097 AF063097 Bacteriophage P2, complete genome.
+59 82.00 12413 12315 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 12984 12886 AF063097 AF063097 Bacteriophage P2, complete genome.
+437 45.00 12260 10731 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 12831 11302 AF063097 AF063097 Bacteriophage P2, complete genome.
+83 40.00 10651 10367 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 11224 10940 AF063097 AF063097 Bacteriophage P2, complete genome.
+102 50.00 10280 10029 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10859 10608 AF063097 AF063097 Bacteriophage P2, complete genome.
+61 36.00 9983 9714 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10562 10293 AF063097 AF063097 Bacteriophage P2, complete genome.
+611 55.00 12696 11092 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 13267 11663 AF063097 AF063097 Bacteriophage P2, complete genome.
+69 78.00 10935 10801 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 11506 11372 AF063097 AF063097 Bacteriophage P2, complete genome.
+57 54.00 10116 9967 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 10695 10546 AF063097 AF063097 Bacteriophage P2, complete genome.
+46 32.00 9500 9156 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 9205 8861 AF063097 AF063097 Bacteriophage P2, complete genome.
+358 46.00 9499 8228 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 9204 7933 AF063097 AF063097 Bacteriophage P2, complete genome.
+199 58.00 9021 8485 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 8726 8190 AF063097 AF063097 Bacteriophage P2, complete genome.
+43 40.00 9011 8841 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 8716 8546 AF063097 AF063097 Bacteriophage P2, complete genome.
+155 46.00 8774 8229 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 8479 7934 AF063097 AF063097 Bacteriophage P2, complete genome.
+156 49.00 8245 7724 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 7507 6986 AF063097 AF063097 Bacteriophage P2, complete genome.
+100 66.00 7713 7519 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6977 6783 AF063097 AF063097 Bacteriophage P2, complete genome.
+264 74.00 8228 7731 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 7490 6993 AF063097 AF063097 Bacteriophage P2, complete genome.
+135 69.00 7714 7451 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6978 6715 AF063097 AF063097 Bacteriophage P2, complete genome.
+243 53.00 7449 6727 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6712 5990 AF063097 AF063097 Bacteriophage P2, complete genome.
+189 51.00 8223 7723 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 7485 6985 AF063097 AF063097 Bacteriophage P2, complete genome.
+125 61.00 7715 7452 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6979 6716 AF063097 AF063097 Bacteriophage P2, complete genome.
+144 52.00 7448 7050 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6711 6313 AF063097 AF063097 Bacteriophage P2, complete genome.
+66 52.00 7007 6825 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6270 6088 AF063097 AF063097 Bacteriophage P2, complete genome.
+170 47.00 7309 6791 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 6572 6054 AF063097 AF063097 Bacteriophage P2, complete genome.
+66 40.00 6554 6258 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5819 5523 AF063097 AF063097 Bacteriophage P2, complete genome.
+132 51.00 6236 5880 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5495 5139 AF063097 AF063097 Bacteriophage P2, complete genome.
+351 45.00 5878 4817 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5132 4071 AF063097 AF063097 Bacteriophage P2, complete genome.
+127 46.00 4751 4368 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4022 3639 AF063097 AF063097 Bacteriophage P2, complete genome.
+241 61.00 4372 3881 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3643 3152 AF063097 AF063097 Bacteriophage P2, complete genome.
+611 51.00 3876 2134 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3139 1397 AF063097 AF063097 Bacteriophage P2, complete genome.
+98 52.00 6544 6245 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5809 5510 AF063097 AF063097 Bacteriophage P2, complete genome.
+133 58.00 6235 5894 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5494 5153 AF063097 AF063097 Bacteriophage P2, complete genome.
+301 68.00 5871 5245 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5125 4499 AF063097 AF063097 Bacteriophage P2, complete genome.
+161 68.00 5154 4816 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4408 4070 AF063097 AF063097 Bacteriophage P2, complete genome.
+401 66.00 4749 3880 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4020 3151 AF063097 AF063097 Bacteriophage P2, complete genome.
+1286 85.00 3871 2000 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3134 1263 AF063097 AF063097 Bacteriophage P2, complete genome.
+48 58.00 6228 6130 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5487 5389 AF063097 AF063097 Bacteriophage P2, complete genome.
+72 58.00 6069 5884 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5328 5143 AF063097 AF063097 Bacteriophage P2, complete genome.
+125 50.00 5840 5460 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 5094 4714 AF063097 AF063097 Bacteriophage P2, complete genome.
+95 53.00 5393 5109 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4647 4363 AF063097 AF063097 Bacteriophage P2, complete genome.
+44 59.00 4916 4815 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4170 4069 AF063097 AF063097 Bacteriophage P2, complete genome.
+122 47.00 4750 4427 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 4021 3698 AF063097 AF063097 Bacteriophage P2, complete genome.
+168 66.00 4319 3975 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3590 3246 AF063097 AF063097 Bacteriophage P2, complete genome.
+128 52.00 3857 3486 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 3120 2749 AF063097 AF063097 Bacteriophage P2, complete genome.
+199 58.00 3254 2778 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 2517 2041 AF063097 AF063097 Bacteriophage P2, complete genome.
+89 65.00 2729 2544 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1992 1807 AF063097 AF063097 Bacteriophage P2, complete genome.
+63 52.00 2495 2346 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1758 1609 AF063097 AF063097 Bacteriophage P2, complete genome.
+126 54.00 2285 1977 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1548 1240 AF063097 AF063097 Bacteriophage P2, complete genome.
+84 44.00 1958 1665 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 2621 2328 AF063097 AF063097 Bacteriophage P2, complete genome.
+58 45.00 1391 1251 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 2021 1881 AF063097 AF063097 Bacteriophage P2, complete genome.
+264 47.00 1222 362 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1216 356 AF063097 AF063097 Bacteriophage P2, complete genome.
+645 78.00 1209 208 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1203 202 AF063097 AF063097 Bacteriophage P2, complete genome.
+267 49.00 1145 303 big_blast_x_t_2_50000_af063097.fasta_b132222.fasta.00000001 1139 297 AF063097 AF063097 Bacteriophage P2, complete genome.
diff --git a/etc/b132222.embl b/etc/b132222.embl
new file mode 100644
index 000000000..4e4dcccab
--- /dev/null
+++ b/etc/b132222.embl
@@ -0,0 +1,1512 @@
+ID B132222 standard; DNA; PHG; 30624 BP.
+XX
+AC U32222; U51471; X04449; X53318;
+XX
+SV U32222.1
+XX
+DT 27-OCT-1995 (Rel. 45, Created)
+DT 09-SEP-1998 (Rel. 56, Last updated, Version 6)
+XX
+DE Bacteriophage 186, complete sequence.
+XX
+KW .
+XX
+OS Enterobacteria phage 186
+OC Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae;
+OC P2-like Viruses.
+XX
+RN [1]
+RP 20315-23876
+RX MEDLINE; 87112711.
+RA Kalionis B., Dodd I.B., Egan J.B.;
+RT "Control of gene expression in the P2-related template coliphages. III. DNA
+RT sequence of the major control region of phage 186";
+RL J. Mol. Biol. 191(2):199-209(1986).
+XX
+RN [2]
+RP 23435-24666
+RX MEDLINE; 89199647.
+RA Richardson H., Puspurs A., Egan J.B.;
+RT "Control of gene expression in the P2-related temperate coliphage 186. VI.
+RT Sequence analysis of the early lytic region";
+RL J. Mol. Biol. 206(1):251-255(1989).
+XX
+RN [3]
+RP 22430-23430
+RX MEDLINE; 90317829.
+RA Dodd I.B., Kalionis B., Egan J.B.;
+RT "Control of gene expression in the temperate coliphage 186. VIII. Control
+RT of lysis and lysogeny by a transcriptional switch involving face-to-face
+RT promoters";
+RL J. Mol. Biol. 214(1):27-37(1990).
+XX
+RN [4]
+RP 12142-14054
+RX MEDLINE; 95407087.
+RA Xue Q., Egan J.B.;
+RT "DNA sequence of tail fiber genes of coliphage 186 and evidence for a
+RT common ancestor shared by dsDNA phage fiber genes";
+RL Virology 212(1):128-133(1995).
+XX
+RN [5]
+RP 14042-15941
+RX MEDLINE; 95407099.
+RA Xue Q., Egan J.B.;
+RT "Tail sheath and tail tube genes of the temperate coliphage 186";
+RL Virology 212(1):218-221(1995).
+XX
+RN [6]
+RP 11442-18696
+RA Xue Q.;
+RT "Studies on the tail region of the temperate coliphage 186 genome";
+RL Thesis (1993), University of Adelaide
+XX
+RN [7]
+RP 1-20866
+RX MEDLINE; 98371265.
+RA Portelli R., Dodd I.B., Xue Q., Egan J.B.;
+RT "The late-expressed region of the temperate coliphage 186 genome";
+RL Virology 248(1):117-130(1998).
+XX
+RN [8]
+RP 1-30624
+RA Dodd I.B., Egan J.B.;
+RT "Bacteriophage 186 complete genome";
+RL Unpublished.
+XX
+RN [9]
+RP 11442-18696
+RA Xue Q., Egan J.B.;
+RT ;
+RL Submitted (25-JUL-1995) to the EMBL/GenBank/DDBJ databases.
+RL Department of Biochemistry, University of Adelaide, Adelaide, SA 5005,
+RL Australia
+XX
+RN [10]
+RP 1-30624
+RA Xue Q., Egan J.B.;
+RT ;
+RL Submitted (15-MAY-1998) to the EMBL/GenBank/DDBJ databases.
+RL Department of Biochemistry, University of Adelaide, Adelaide, SA 5005,
+RL Australia
+XX
+DR SPTREMBL; O80303; O80303.
+DR SPTREMBL; O80304; O80304.
+DR SPTREMBL; O80305; O80305.
+DR SPTREMBL; O80306; O80306.
+DR SPTREMBL; O80307; O80307.
+DR SPTREMBL; O80308; O80308.
+DR SPTREMBL; O80309; O80309.
+DR SPTREMBL; O80310; O80310.
+DR SPTREMBL; O80311; O80311.
+DR SPTREMBL; O80312; O80312.
+DR SPTREMBL; O80313; O80313.
+DR SPTREMBL; O80314; O80314.
+DR SPTREMBL; O80315; O80315.
+DR SPTREMBL; O80316; O80316.
+DR SPTREMBL; O80317; O80317.
+DR SPTREMBL; Q01088; Q01088.
+DR SPTREMBL; Q37840; Q37840.
+DR SPTREMBL; Q37841; Q37841.
+DR SPTREMBL; Q37842; Q37842.
+DR SPTREMBL; Q37843; Q37843.
+DR SPTREMBL; Q37844; Q37844.
+DR SPTREMBL; Q37845; Q37845.
+DR SPTREMBL; Q37846; Q37846.
+DR SPTREMBL; Q37848; Q37848.
+DR SPTREMBL; Q37850; Q37850.
+DR SPTREMBL; Q37851; Q37851.
+DR SPTREMBL; Q9T0R3; Q9T0R3.
+DR SWISS-PROT; P06723; VINT_BP186.
+DR SWISS-PROT; P08685; CP69_BP186.
+DR SWISS-PROT; P08707; RPC1_BP186.
+DR SWISS-PROT; P08711; VPB_BP186.
+DR SWISS-PROT; P15236; VFIL_BP186.
+DR SWISS-PROT; P21678; RPC2_BP186.
+DR SWISS-PROT; P21679; VPD_BP186.
+DR SWISS-PROT; P21680; VDHR_BP186.
+DR SWISS-PROT; P21681; VAPL_BP186.
+DR SWISS-PROT; P21682; CP79_BP186.
+DR SWISS-PROT; P41059; CP80_BP186.
+DR SWISS-PROT; P41060; CP81_BP186.
+DR SWISS-PROT; P41061; CP83_BP186.
+DR SWISS-PROT; P41062; CP84_BP186.
+DR SWISS-PROT; P41063; TUM_BP186.
+DR SWISS-PROT; P41064; VPA_BP186.
+XX
+CC On Jul 23, 1998 this sequence version replaced gi:14895 gi:15549
+CC gi:1262241 gi:974436.
+XX
+FH Key Location/Qualifiers
+FH
+FT source 1..30624
+FT /db_xref="taxon:29252"
+FT /organism="Enterobacteria phage 186"
+FT misc_recomb 1..19
+FT /evidence=EXPERIMENTAL
+FT /note="cos; cohesive end; top strand cut at 5' end and
+FT bottom strand cut at 3' end"
+FT /organism="Enterobacteria phage 186"
+FT terminator complement(164..187)
+FT /evidence=NOT_EXPERIMENTAL
+FT /note="tW"
+FT /gene="W"
+FT CDS complement(196..1218)
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37851"
+FT /note="Orf2; P2 Q homolog"
+FT /transl_table=11
+FT /gene="W"
+FT /product="capsid portal protein"
+FT /protein_id="AAC34146.1"
+FT /translation="MSKRKPRKQVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECIS
+FT NGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLV
+FT FGNAFLEQRHSVTGQLIKLLASPAKYTRRGVDDSVFWFVENFTLPHEFAPDTVFHLLEP
+FT DINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLR
+FT EAMRNSKGLGNFKNLFFYAPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVP
+FT FQLMGGKPENIGSLGDVEKVAKVFVRNDLSPLQDRFREVNDWLGMEVIRFKEYTLDNPE
+FT "
+FT CDS complement(1215..1961)
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80303"
+FT /note="similar to Orf12"
+FT /transl_table=11
+FT /gene="W"
+FT /product="W protein"
+FT /protein_id="AAC34147.1"
+FT /translation="MKNNVFSQSQIQAMADILHNDSFDYQATWLRVGKLNIDRSITKSR
+FT QIGATQLFSREALLDALTTGDNHVWFAHTIEHARVALMYMSNLSARVGVSLTSNGHSLQ
+FT LDDGAVISFVGEESHCAALAGNVYLDEFGWFNNPLRAAKVAAGIACHKRHSLTMFTSPS
+FT DNYDAFRVWNGTTRRHRPSPLINTGDSVFCTDGVWRQSVTLDAACQRGCNLFAPDEIKH
+FT EYSDDDYRLLFGCDWSFAVAAGEVAA"
+FT CDS complement(1961..3730)
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q9T0R3"
+FT /note="Orf12; P2 P homolog; contains putative
+FT helix-turn-helix DNA-binding motif"
+FT /transl_table=11
+FT /product="terminase subunit"
+FT /protein_id="AAC34148.1"
+FT /translation="MTISTDTTLLHDPRRQASLLYWQGFSVPQIAEMLQVKRPTVQSWK
+FT QRDGWDGIAPISRVESSLEARLIQLIAKPQKSGGDFKEIDLLGRQIERLARVNRYSQTG
+FT NEADLNPNVANRNKGERKKPKKNFFSDEAIEKLEELFFDQSFEYQLQWYRAGLAHRIRD
+FT ILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIQFARLVDVDLTGD
+FT PIVIGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTY
+FT FSTPSTLAHGAYPFWSGELFNKGRSRIADRIEIDISHRALAGGQLCDDGQWRQIVTIED
+FT ALAGGCTLFDLDQLKRENSDEDFKNLFMCEFVDDKASVFPFEELQRCMVDVMEEWEDFA
+FT PFADHPFGSRPVWIGYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQADG
+FT IRKLTEKYSVEYIGIDATGLGLGVFQLVRSFYPAARGIRYTPEMKTAMVLKAKDTIRRG
+FT CLEYDAGATDVTQSFMSIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPLSA
+FT GSGIQPKSILEFN"
+FT promoter complement(3753..3790)
+FT /evidence=EXPERIMENTAL
+FT /note="p12"
+FT /function="B-dependent transcription of orf12 operon"
+FT protein_bind 3798..3817
+FT /evidence=EXPERIMENTAL
+FT /bound_moiety="B protein"
+FT /function="activation of pV and p12 promoters"
+FT promoter 3828..3865
+FT /evidence=EXPERIMENTAL
+FT /note="pV"
+FT /gene="V"
+FT /function="B-dependent transcription of V operon"
+FT CDS 3896..4750
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q01088"
+FT /note="presumed capsid scaffold; P2 O homolog"
+FT /transl_table=11
+FT /gene="V"
+FT /product="V protein"
+FT /protein_id="AAC34149.1"
+FT /translation="MAKKVSKFFRIGVEGDTCDGRIISASDIQEMAETYDPRVYGCRIN
+FT LEHLRGLLPDGIFKRYGDVVELKAEKIDDDSALNGKWALFAKITPTDDLIAMNKAAQKV
+FT YTSMEIQPNFANTGKCYLVGLAVTDDPASLGTEYLEFCRTAKHNPLQRFKAHPENVFSA
+FT ATLAELEFEDVPDTVLNSLADKVKAIFSRKQVSDDARLNDVHEAVTAVSEHVQTNLTAQ
+FT DKRLSDMETAFATFKQELTGKVEETSQAFSVLKTTLDKTESFSQPRRTKASGGGGDELL
+FT TDC"
+FT variation 3980
+FT /note="Vam38; glutamine to amber"
+FT /replace="t"
+FT /gene="V"
+FT CDS 4826..5893
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80304"
+FT /note="T protein; P2 N homolog"
+FT /transl_table=11
+FT /gene="T"
+FT /product="major capsid protein"
+FT /protein_id="AAC34150.1"
+FT /translation="MRQETRFKFNAYLTQLAKLNGISVDDVSKKFTVEPSVTQTLMNTV
+FT QASSAFLQMINILPVAEMKGEKIGVGVTGTIASTTDTSGDKERQTADFTALESNKYECN
+FT QINFDFHLTYKRLDLWARFQDFQRRIRDAIVQRQALDFIMAGFNGTTRADTSDRVKNPM
+FT LQDVAVGWLQKYRNEAPARVMSNITDADGKVVSAVIRVGKNGDYENLDALVMDGTNTLI
+FT DEIYQDDPKLVAIVGRKLLADKYFPLVNKQQENTESLAADIIISQKRIGNLPAVRVPYF
+FT PANAVFVTTLENLSIYFMDESHRRSIDENPKKDRVENYESMNIDYVVEAYAAGCLLENI
+FT TLGDFTAPAAPEGGE"
+FT CDS 5898..6647
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80305"
+FT /note="terminase subunit; P2 M homolog"
+FT /transl_table=11
+FT /gene="R"
+FT /product="R protein"
+FT /protein_id="AAC34151.1"
+FT /translation="MTSPAQRHMMRVSASQAAQREQAPLRHATAYEQMLVKLADDRRTL
+FT KNIRSNERKAEKKRELLPFYAPWVAGVLTDGRGAQDDIVMTVMLWRLDAGDIAGALEIA
+FT PYALKYGLTSDHRRTTPYMLVEEVALAAQRLRDAGESVDLSWLQATIDLTDGADVPDMV
+FT RARLHKVTGLTLRDAGMNAEALAQFQRAMQLDRNAGVRKEIERLERALKPKTEAAPRKT
+FT TKPRTRKPATKPAAKRGRPPKAAKTAG"
+FT CDS 6740..7246
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80306"
+FT /note="capsid completion protein; P2 L homolog"
+FT /transl_table=11
+FT /gene="Q"
+FT /product="Q protein"
+FT /protein_id="AAC34152.1"
+FT /translation="MTTVILNQPDEPQDVPGVVIPAPETGGAVIKNTFFFPDVDPKRVR
+FT ELMRLEQTVSDARLRNAIKTGMAETNAELYDYRLRQTAAGFKQLADVPAEEIDGENVRV
+FT FHYLSAVTAMATATLYERYRGVEATGKGDKKADSVETTIDDLWRDMRWSVARLQDKPRC
+FT IVGQL"
+FT CDS 7246..7449
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80307"
+FT /note="Orf23; P2 X homolog; tail protein"
+FT /transl_table=11
+FT /protein_id="AAC34153.1"
+FT /translation="MKVRSMQGDTLDTICARYYGRTEGVVETVLQANPGLSELGVILPN
+FT GTEIDLPDVASSPVTKTINLWE"
+FT CDS 7452..7748
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80308"
+FT /note="Orf24; P2 Y homolog; holin"
+FT /transl_table=11
+FT /protein_id="AAC34154.1"
+FT /translation="MTEGEKGVLSLFVIGVMIVVGKVLAGGEPITPRLFIGRMLLGGFV
+FT SMVAGVVLVQFPDMSLPAVCGIGSMLGIAGYQVVEIAIQRRFKSQKGESDAGH"
+FT CDS 7735..8232
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80309"
+FT /note="endolysin; P2 K and lambda S homolog"
+FT /transl_table=11
+FT /gene="P"
+FT /product="P protein"
+FT /protein_id="AAC34155.1"
+FT /translation="MPVINTHQNIAAFLDMLAYSEGTANHPLTKNRGYDVIVTGLDGRP
+FT EIFTDYSDHPFAHGRPPKVFNRRGEKSTASGRYQQLYLFWPHYQKQLALPDFSPLSQDK
+FT LAIQLIRERGALDDIRAGRIERAVSRCRNIWASLPGAGYGQREHGLEKLVTIWRTAGGV
+FT VA"
+FT variation 7999
+FT /note="Pam65"
+FT /replace="t"
+FT /gene="P"
+FT CDS 8229..8642
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80310"
+FT /note="Orf27; P2 LysB homolog; control of lysis"
+FT /transl_table=11
+FT /protein_id="AAC34156.1"
+FT /translation="MKVLITLLVMAVLGLLWLHHENGNLSRSFETANRVASEQKTTIGM
+FT LKNQLSVAGQLARRNESAQVTLREQLAKASAEASRREQTITRLLNENEAFRRWYNAALP
+FT DAVRRLHTRTACASAGDCGQRMPEGEPLPYAGK"
+FT CDS 8497..8787
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80311"
+FT /note="Orf28; homologs present in other phages, e.g. P2,
+FT HP1"
+FT /transl_table=11
+FT /product="unknown"
+FT /protein_id="AAC34157.1"
+FT /translation="MKMKPFAAGITLLCLMLCVGCTPEQPAPVPVIVVNGCPRVSLCPM
+FT PGSDPKTNGDLSADIRRLEGALTACALQVKTVKHCQDELDAEAQKPAQSAD"
+FT CDS 8750..9217
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80312"
+FT /note="P2 R homolog; tail completion protein"
+FT /transl_table=11
+FT /gene="N"
+FT /product="N protein"
+FT /protein_id="AAC34158.1"
+FT /translation="MQKHKSLRKALINAVPQLRNNPDMLRLFADNGHTDSRLASSLSFE
+FT KVYVLNVVVTDFTGDLDLIFVPVQAWLREHQPDIMTTDDGREKGFTWIIDINNDDSLDI
+FT SISLRLTERTLVKEVGGALHVSYAPEPPLPELVKRPVAMYANGELVSQWDE"
+FT variation 8877
+FT /note="Nam47"
+FT /replace="a"
+FT /gene="N"
+FT CDS 9210..9659
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80313"
+FT /note="P2 S homolog; tail completion protein"
+FT /transl_table=11
+FT /gene="O"
+FT /product="O protein"
+FT /protein_id="AAC34159.1"
+FT /translation="MSELTALQERLAGLIASLSPAARRKMAAEIAKKLRTSQQQRIKRQ
+FT QAPDGTPYAARKRQPVRSKKGRIKREMFAKLRTSRFMKAKGSDSAAVVEFTGKVQRMAR
+FT VHQYGLKDRPNRNSRDVQYEARPLLGFTRDDEQMIEDVIISHLGK"
+FT variation 9324
+FT /note="Oam61"
+FT /replace="t"
+FT /gene="O"
+FT variation 9345
+FT /note="Oam62"
+FT /replace="t"
+FT /gene="O"
+FT CDS 9729..10370
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80314"
+FT /note="Orf32; P2 V homolog; baseplate protein"
+FT /transl_table=11
+FT /protein_id="AAC34160.1"
+FT /translation="MNTLSTIQELARAIRNLIRSGVVTEVDTVQGLCRVQSGGIQTTWL
+FT NWLTTRAGRSRTWWAPSLGEQVLLLAIGGELDTAFVLPGIFSDDNPAPSASADAWHVVF
+FT PDGAVIEYEPETSALTVRGIKTADVTASESITATVPVVLVKAETRITLDTPEVVCTNKL
+FT TTATLEVQKGGEMRGDIVHNGGTFKSNGVQLDDHGHGGVQRGGAWTEDTK"
+FT CDS 10367..10714
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80315"
+FT /note="P2 W homolog; putative baseplate protein"
+FT /transl_table=11
+FT /gene="M"
+FT /product="M protein"
+FT /protein_id="AAC34161.1"
+FT /translation="MTARYMGMNRNTGLGISDTEHISQSMRDILLTPVGSRVMRREYGS
+FT LLSALIDMPQNPALRLQIMVACYSAIQKWEPRIRLTSISFETGDAGEMYVDITGMRTDT
+FT GASVSTTVSLS"
+FT CDS 10721..11629
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37840"
+FT /note="P2 J homolog; baseplate or base of tail fibre"
+FT /transl_table=11
+FT /gene="L"
+FT /protein_id="AAC34162.1"
+FT /translation="MATVDLSLLPVPDVVEELDFETILAERIATLISLYPEDQQEAVAR
+FT TLALESEPIVKLLQENAYREVIWRQRVNEAARAGMLAYARDSDLDNLGANFNVERLVVR
+FT PADDTTIPPTPAEMELDADFRLRIQQAFEGMSVAGSTGAYEFHGRSADGRVADISVISP
+FT SPACVTISVLSRENNGAASDELQSIVRNALNAEDVRPVADRVTVQSAQIIDYQIRATLF
+FT VYPGPENEPIRAAAEAKLKAYISAQHRLGRDIRLSAIYAALHVEGVQRVELAAPVADIV
+FT LDKTQASFCTDYQIVIGGSDE"
+FT variation 10818
+FT /note="Lam21"
+FT /replace="a"
+FT /gene="L"
+FT CDS 11622..12152
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37841"
+FT /note="Orf38; P2 I homolog; tail protein"
+FT /transl_table=11
+FT /protein_id="AAC34163.1"
+FT /translation="MSDVRLLPVGSSPLEVAAARACADIENTPVPLRRLWSPDTCPANL
+FT LPWLAWAFSVDRWDENWPEKTKRDVIRSAYFTHCHKGTIGAVRRVIEPLGYIINVTEWW
+FT ETGDPAGTFRLDIGVLESGITEEMYLEMERLIADAKPASRHLIGLNIIQDIPGYMYTGG
+FT VSCDGDIITVYPG"
+FT CDS 12163..13551
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37842"
+FT /note="similar to P2 tail fiber protein H, PIR Accession
+FT Number B42291"
+FT /transl_table=11
+FT /gene="K"
+FT /protein_id="AAC34164.1"
+FT /translation="MSTKFKTIITTAGAEKLAAATVPGGKKVNITVMAVGDGGGKLPVP
+FT DAGQVQLVNEVWRHALNKISQDNRNSNYIVAELVIPPEVGGFWMRELGLYDDEGTLIAV
+FT ANMAESYKPELAEGSGRAQTCRMVIIVSSIASVELSIDSTMVMATQEYVDDRIAEHEKS
+FT RRHPDATLKEKGFTQLSSATDSASEVLAATPKAVKAAYDLANAKYTAQDASTAQKGIVR
+FT LSSAADSTSEAEAATPKAVKIAMDNANARLAKDRNGADIPNPPLFVQNIGLKPTVDKAA
+FT NAVDKNGDTMNGNLTLKGDYRLSFIIQNEDGSIRAYIFKDKGGDGIRISNGDDGGGDFV
+FT FGKNGQFYCPDIMHVGNTIVWGDGNIEGARWGGLLSDWLTAQLVARDNNINLRAPYEWV
+FT NQNFVNRAQRGAQASMTMDGGLVEAPWGCFLTGGNGNEGNQVGVALYRPLQILRNNTWV
+FT TIEN"
+FT misc_recomb 12962..12987
+FT /note="Mu-like inversion crossover site"
+FT /organism="Enterobacteria phage 186"
+FT /gene="K"
+FT CDS 13554..14054
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37843"
+FT /note="unnamed protein product"
+FT /transl_table=11
+FT /protein_id="AAC34165.1"
+FT /translation="MKLINLQRYILMNYFLGDGIQYFIDATGKDWYKSLPKFTKKYSLA
+FT IENDTGVIRSISEDASRLYPGGLTVVDVDSIPAGCDIFGGWVFDGEKVIPREYTLAEQQ
+FT RQSDEKKKTLLAEAEATISTLERAVRLGMATGEEIRRLEAWERYSVLVSRVKQSDDWPQ
+FT KPE"
+FT terminator 14058..14081
+FT /evidence=NOT_EXPERIMENTAL
+FT /note="t45"
+FT protein_bind 14091..14110
+FT /evidence=NOT_EXPERIMENTAL
+FT /bound_moiety="B protein"
+FT /function="activation of transcription from pJ"
+FT promoter 14122..14159
+FT /evidence=EXPERIMENTAL
+FT /note="pJ"
+FT /function="B-dependent transcription of J operon"
+FT promoter 14159
+FT /note="initiation point of late promoter pJ"
+FT CDS 14183..15361
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37844"
+FT /note="similar to P2 tail sheath protein FI, Swiss-Prot
+FT Accession Number P22501"
+FT /transl_table=11
+FT /gene="J"
+FT /protein_id="AAC34166.1"
+FT /translation="MSDFHHGTKVIEINDGTRVISTVATAIVGMVWTASDADAETFPLN
+FT EPVLITNVQSAIAKAGKKGTLSASLQAIADQSKPVTVVVRVAEGTGDDAEAQTTSNIIG
+FT GTDENGKYTGIKALLTAEAVTGVKPRILGVPGLDTQEVATALASVCISLRAFGYVSAWG
+FT CKTISEAMAYRENFSQRELMVIWPDFLAWDTTANATATAYATARALGLRAYIDQTIGWH
+FT KTLSNVGVQGVTGISASVFWDLQASGTDADLLNEAGVTTLVRKDGFRFWGNRTCSDDPL
+FT FLFENYTRTAQVLADTMAEAHMWAVDKPITASLIRDIVDGINAKFRELKSNGYIVDGEC
+FT WFDEESNDKETLKAGKLYIDYDYTPVPPLESLTLRQRITDKYLVNLAESVNS"
+FT CDS 15377..15898
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37845"
+FT /note="similar to P2 tail tube protein FII, Swiss-Prot
+FT Accession Number P22502"
+FT /transl_table=11
+FT /gene="I"
+FT /protein_id="AAC34167.1"
+FT /translation="MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNG
+FT AAAIDLGLDDDALTVEWSVGGLPDVALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVE
+FT VVMRGRHKEIDGGENKQGENTSTKLSTVCTYYRLTIDGSDIIEIDTVNMVEKVNGVDRL
+FT EQHRRAIGLL"
+FT terminator 15906..15932
+FT /note="tI; partial terminator of pJ transcript"
+FT CDS 15960..16295
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37846"
+FT /note="Orf51; P2 E homolog; tail protein"
+FT /transl_table=11
+FT /gene="H"
+FT /protein_id="AAC34168.1"
+FT /translation="MAKAPRKTPEFIDTAGNEIDTVNPNVVTLDKPIKRAGQTIEKVTL
+FT IEPNAGTLRGVSLAAVAQSEVDALIKVLPRMTYPALTTQELTAMNLPDMLSLAAKVIGF
+FT LSPASAE"
+FT CDS <16271..16447
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80316"
+FT /note="Orf52; tail protein; probably produced by a
+FT translational frameshift from orf51 into orf52"
+FT /transl_table=11
+FT /gene="H"
+FT /protein_id="AAC34169.1"
+FT /translation="FVTGFGGIDFPPGLSTDDLMADIAVIFHWPPSELYSLSLTELITW
+FT REKALQRSGNHNE"
+FT variation 16314
+FT /note="Ham50"
+FT /replace="a"
+FT /gene="H"
+FT variation 16421
+FT /note="Ham56"
+FT /replace="t"
+FT /gene="H"
+FT CDS 16440..18878
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37848"
+FT /note="P2 T homolog; tail protein"
+FT /transl_table=11
+FT /gene="G"
+FT /product="G protein"
+FT /protein_id="AAC34170.1"
+FT /translation="MSNNLRLEVLLKAVDQATRPLKSIQTASKSLSGDIRDTQKGLRDL
+FT NGQASKIDGFRKASAQLAVTSQALDKAKREAGELAVQFKNTTNPTRAQAQALEAARRAA
+FT SELQTKYNSLRTSVQRQRSELMQAGINTRTLSADERRLKTSISETTAHVNRQREALARV
+FT SAQQAKLSRVKERYKSGKELAGNMAAAGAAGSVSRHGTMAGVKLLMPGYDFTQKNSELQ
+FT AVLGVDKQSPEMQALRKQARHVGDNTAASADDAASAQIIIAKSGGDAAAIQARRRVTLN
+FT MALSNRRTMEENAALLTGMKSAFQLSNDKIAHIGDVLSMTMNKTAADFDGLSDALTYAA
+FT PVAKNAGVSIEQTAAMVGALHDAKITGSMAGTGSRAILSRLQLPPEKAFEAIKELGVKT
+FT SDSKGNTRPIFSILKEMQRSFEKNNLGTSQRGEYMKTIFGEEASSAAAVLMEAASSGKL
+FT DRLTAAFKASDGKTEELVKVMQDNLGGDFKEFQSAYEAVGTDLFDQQEGSLRKLTQTAT
+FT QYVLKLDGWIQKNKGLATTIGIIAGGALALIGIIGGIGLVAWPVVMGINAIIAAAGVLG
+FT TVFTVTGSAIVTALGAITWPIVAVGAAIVAGALLIRKYWEPISAFFSGVIEGIMSAFAP
+FT VAEMFAPLAPIFDGLGEKLRGVWQWFKDLIAPVKATQETLDSCKNVGVIFGQALASALM
+FT RPLNVFNKLRSGVDWLLEKLGIINKESDNLDQTAAKTNAATQGNSYIPATSTYGGYQAY
+FT QPVTAPAGRSYIDQSKSEYKITLPGGAAPGHQLDRQLRDTLEQIEREKRARQRASMSHD
+FT "
+FT CDS 18891..19376
+FT /codon_start=1
+FT /db_xref="SPTREMBL:O80317"
+FT /note="P2 U homolog; tail protein"
+FT /transl_table=11
+FT /gene="F"
+FT /product="F protein"
+FT /protein_id="AAC34171.1"
+FT /translation="MMLALGMFVFERRTLPYQSMQHSKDYRWASNDRVGKPPAYQFLGE
+FT GETSIQLAGTLYPAITGGWISLKAVEVMANEGRAWPLIEGTGNILGMYIVDKVSTTHAE
+FT FFSDGAARKIDFTLSLKRVDESLTAMFGDLNKQASELLGSAGNLTDKLQSALGGLTA"
+FT CDS 19373..20542
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P21679"
+FT /note="P2 D homolog; tail protein"
+FT /transl_table=11
+FT /gene="D"
+FT /product="D protein"
+FT /protein_id="AAC34172.1"
+FT /translation="MITGMTIDAGTSLAPAFMLTLNSQDITSNFSDRLISLTMTDNRGF
+FT EADQLDIELDDTDGKVELPLRGAVLTLWLGWQGSALLNKGDFTVDEIEHRGAPDILTIR
+FT ARSADFRGTLNSRREESWHDTTIGELVSTIAKRNKLTASVADSLKKIPVPHIDQSQESD
+FT AVFLTRLADRNGATVSVKAGKLLFLKAGSAMTASGKPVPQMTLTRNDGDRHQFAIADRG
+FT AYTGVTAKWLHTKDPKPQKQKVTLKRKPKEKHLRALEHPKAKPVSKKTKAKKEPEAREG
+FT EYMAGEADNVLALTTVYASKAQAMRAAQAKWDKLQRGVAEFSITLALGRADLFPETPVR
+FT VSGFKRVIDEQAWLISKVTHNLNNSGFTTGLELEVKLSDVEYNAESDDE"
+FT variation 20378
+FT /note="Dam23"
+FT /replace="t"
+FT /gene="D"
+FT variation 20492
+FT /note="Dam14"
+FT /replace="t"
+FT /gene="D"
+FT protein_bind 20548..20596
+FT /evidence=EXPERIMENTAL
+FT /note="two CI binding sites for repression of pB"
+FT /gene="B"
+FT /bound_moiety="CI"
+FT promoter 20549..20584
+FT /evidence=EXPERIMENTAL
+FT /note="pB; repressed by CI"
+FT /gene="B"
+FT /function="transcription of B gene"
+FT -35_signal 20549..20554
+FT /gene="B"
+FT -10_signal 20572..20577
+FT /gene="B"
+FT CDS 20609..20827
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P08711"
+FT /note="C4 Zn finger protein; P2 Ogr and P4 Delta homolog"
+FT /transl_table=11
+FT /gene="B"
+FT /function="activate late gene promoters"
+FT /product="B protein"
+FT /protein_id="AAC34173.1"
+FT /translation="MFHCPKCHHAAHARTSRYLTENTKERYHQCQNINCSCTFMTMETI
+FT ERFIVTPGAIDPAPPHPTVGGQRPLWL"
+FT variation 20690
+FT /note="Bam57"
+FT /replace="t"
+FT /gene="B"
+FT variation 20744
+FT /note="Bam17"
+FT /replace="t"
+FT /gene="B"
+FT terminator 20845..20866
+FT /note="tB; termination of transcription from pB and late
+FT promoter"
+FT protein_bind 20889..21147
+FT /note="predicted Int arm-type recognition sequences;
+FT consensus = YAYCGCCAYTY; 3 sites to left of attP and 2
+FT sites to right"
+FT /bound_moiety="Int"
+FT terminator complement(20930..20957)
+FT /note="predicted terminator of lysogenic operon"
+FT protein_bind 20959..20985
+FT /evidence=EXPERIMENTAL
+FT /note="IHF DNase I footprint location"
+FT /bound_moiety="IHF"
+FT tRNA 20985..21030
+FT /note="truncated"
+FT /product="tRNA-Ile"
+FT misc_feature 20995..21030
+FT /note="in common with attB in Escherichia coli, which is in
+FT the 3' end of ileY"
+FT misc_feature 21023..21029
+FT /note="attP; predicted crossover region with attB"
+FT variation 21030..22865
+FT /note="del1 deletion"
+FT protein_bind 21057..21086
+FT /evidence=EXPERIMENTAL
+FT /note="IHF DNase I footprint location"
+FT /bound_moiety="IHF"
+FT protein_bind 21075..21121
+FT /note="five binding sites for Apl excisionase at attP"
+FT /bound_moiety="Apl"
+FT CDS complement(21157..21408)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P08685"
+FT /note="Orf69"
+FT /transl_table=11
+FT /protein_id="AAC34174.1"
+FT /translation="MSVRLAPDGTYVYGQPMLAPNGTYVGGGAPRLAPDGTYVGGVPRL
+FT APNGSYVAGRPTLAPDGTYVGGRYHLAPDGTYVGDGSE"
+FT CDS complement(21423..22433)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P06723"
+FT /note="integrase"
+FT /transl_table=11
+FT /gene="int"
+FT /product="Int"
+FT /protein_id="AAC34175.1"
+FT /translation="MTVRKNPAGGWICELYPNGAKGKRIRKKFATKGEALAFEQYTVQN
+FT PWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPLARDFDAQMFSR
+FT YREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTE
+FT EMEMTWLTHDQISQLLGECNRHDHPDLETVVRICLATGARWSEAESLRKSQLAKYKITY
+FT TNTKGRKNRTVPISKELYESLPDDKKGRLFSDCYGAFRSALERTGIELPAGQLTHVLRH
+FT TFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVKLNPLVHITNSK"
+FT CDS complement(22433..23011)
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P08707"
+FT /note="immunity repressor; DNA-binding protein; has
+FT positive and negative autoregulation by control of pL"
+FT /transl_table=11
+FT /gene="cI"
+FT /function="maintenance of lysogeny; repress pB and pR"
+FT /product="CI repressor"
+FT /protein_id="AAC34176.1"
+FT /translation="MRIDSLGWSNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYT
+FT RGAISYDFAAHCALETGANLQWLLTGEGEAFVNNRESSDAKRIEGFTLSEEILKSDKQL
+FT SVDAQFFTKPLTDGMAIRSEGKIYFVDKQASLSDGLWLVDIEGAISIRELTKLPGRKLH
+FT VAGGKVPFECGIDDIKTLGRVVGVYSEVN"
+FT variation 22684..22685
+FT /note="cI10"
+FT /replace="g"
+FT /gene="cI"
+FT protein_bind 22726..22742
+FT /note="FL; unknown function"
+FT /gene="cI"
+FT /bound_moiety="CI"
+FT variation 22989
+FT /note="cIam461"
+FT /replace="t"
+FT /gene="cI"
+FT protein_bind 23011..23067
+FT /note="locus of vir mutations; 3 binding sites for CI
+FT repressor"
+FT /bound_moiety="CI"
+FT /function="repression of pR"
+FT -35_signal 23026..23031
+FT /note="pR"
+FT promoter 23026..23063
+FT /evidence=EXPERIMENTAL
+FT /note="pR; repressed by CI and Apl"
+FT /function="transcription of early lytic operon"
+FT -10_signal 23049..23054
+FT /note="pR"
+FT protein_bind 23056..23123
+FT /note="7 binding sites for Apl; locus of goa mutations"
+FT /bound_moiety="Apl"
+FT /function="repression of pR and pL"
+FT promoter complement(23125..23159)
+FT /evidence=EXPERIMENTAL
+FT /note="pL; repressed by Apl; inhibited by convergent pR
+FT promoter; activated by CI repression of pR"
+FT /function="transcription of lysogenic operon"
+FT -10_signal complement(23131..23136)
+FT /note="pL"
+FT CDS 23141..23404
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P21681"
+FT /note="contains putative helix-turn-helix DNA binding
+FT motif"
+FT /transl_table=11
+FT /gene="apl"
+FT /function="excisionase; binds to attL"
+FT /function="repressor: binds between and represses pR and
+FT pL"
+FT /function="appears to assist derepression during prophage
+FT induction"
+FT /product="Apl"
+FT /protein_id="AAC34177.1"
+FT /translation="MASEIAIIKVPAPIVTLQQFAELEGVSERTAYRWTTGDNPCVPIE
+FT PRTIRKGCKKAGGPIRIYYARWKEEQLRKALGHSRFQLVIGA"
+FT -35_signal complement(23154..23159)
+FT /note="pL"
+FT /gene="apl"
+FT variation 23205..23219
+FT /note="apl11 deletion"
+FT /gene="apl"
+FT variation 23236
+FT /note="aplam"
+FT /replace="g"
+FT /gene="apl"
+FT promoter complement(23400..23462)
+FT /evidence=EXPERIMENTAL
+FT /note="pE; activated by CII, allowing transcription of
+FT lysogenic operon"
+FT /function="transcript for establishment of lysogeny"
+FT protein_bind 23404..23420
+FT /note="FR"
+FT /bound_moiety="CI"
+FT /function="probably responsible for CI repression of pE
+FT promoter"
+FT protein_bind 23435..23462
+FT /gene="cII"
+FT /bound_moiety="CII"
+FT /function="activate pE"
+FT CDS 23435..23944
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P21678"
+FT /note="DNA binding protein; has putative helix-turn-helix
+FT motif"
+FT /transl_table=11
+FT /gene="cII"
+FT /function="required for establishment of lysogeny"
+FT /function="activates pE, alternative lysogenic operon
+FT promoter"
+FT /product="CII"
+FT /protein_id="AAC34178.1"
+FT /translation="MFDFQVSKHPHYDEACRAFAQRHNMAKLAERAGMNVQTLRNKLNP
+FT EQPHQFTPPELWLLTDLTEDSTLVDGFLAQIHCLPCVPVNELAKDKLQSYVMRAMSELG
+FT ELASGAVSDERLTTARKHNMIESVNSGIRMLSLSALALHARLQTNPAMSSVVDTMSGIG
+FT ASFGLI"
+FT variation 23440
+FT /note="prevents CII binding to pE; cIV476"
+FT /replace="a"
+FT /gene="cII"
+FT variation 23657
+FT /note="cIIam475"
+FT /replace="t"
+FT /gene="cII"
+FT CDS 23952..24179
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P15236"
+FT /evidence=EXPERIMENTAL
+FT /note="overexpression blocks cell division"
+FT /transl_table=11
+FT /gene="fil"
+FT /product="Fil"
+FT /protein_id="AAC34179.1"
+FT /translation="MLKSEPSFASLLVKQSPGMHYGHGWIAGKDGKRWHPCRSQSELLK
+FT GLKTKSPKSSGFLIIRIVHFVIKGVKHVTR"
+FT variation 24112
+FT /note="CP77am; filam"
+FT /replace="a"
+FT /gene="fil"
+FT CDS 24166..24366
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P21680"
+FT /transl_table=11
+FT /gene="dhr"
+FT /function="inhibits host DNA replication"
+FT /product="Dhr"
+FT /protein_id="AAC34180.1"
+FT /translation="MSRDELRIVLGAMIPNMEEGFEIKTRDGAILRVDPEWECCKEFKD
+FT GLKAEIIKQLKSKPAVVFGYS"
+FT variation 24194
+FT /note="CP78am; dhram"
+FT /replace="a"
+FT /gene="dhr"
+FT terminator 24384..24412
+FT /note="tR1; one of a number of transcription terminators in
+FT this region that are anti-terminated during early lytic
+FT development by an unknown mechanism"
+FT CDS 24433..24666
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P21682"
+FT /note="unknown function; not essential"
+FT /transl_table=11
+FT /product="Orf79"
+FT /protein_id="AAC34181.1"
+FT /translation="MSRTIYLSTPSGAGDHLLESLFKEAKKEERKDRRLAVSIRLEDLA
+FT VHITNSDMTGKEAAELLRREATRFENESQELH"
+FT CDS 24666..24893
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41059"
+FT /note="unknown function; not essential"
+FT /transl_table=11
+FT /product="Orf80"
+FT /protein_id="AAC34182.1"
+FT /translation="MADAMDLAQLREQEDRERHISNARSRRHEVSAFICEECDAPIPEA
+FT RRRAIPGVQCCVTCQEILELKSKHYNGGAL"
+FT CDS 24890..25474
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41060"
+FT /note="unknown function; not essential"
+FT /transl_table=11
+FT /product="Orf81"
+FT /protein_id="AAC34183.1"
+FT /translation="MSITNATISQRAKKWLEDDRIFIDTETTGLGDDAEIVEICLIDSA
+FT GFIMLNTLVKPTKPIPAEATAIHGITDEMVMYAPTWKDIHGAVASLFFEYGFVIYNADY
+FT DTRLIYQTAKLYGLENDGFCYFLNERSACAMMLYAEYRGEPGRFKGYKWHKLVDAAAHE
+FT GVSVEGKAHRALADCRMTLGIIDALAKGGAA"
+FT CDS 25471..25746
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41061"
+FT /note="unknown function; not essential"
+FT /transl_table=11
+FT /product="Orf83"
+FT /protein_id="AAC34184.1"
+FT /translation="MSIRIEIGDKWVITSDQYQFILNEKKVVKTGNKAGEEWLDTIGYY
+FT PKINQLISGLVHHHIHTAMIISLSAMAEEIEKLSFICEEAFKAVKK"
+FT CDS 25743..26747
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41062"
+FT /note="unknown function; not essential. translation to end
+FT of orf84 appears necessary for translation of A protein"
+FT /transl_table=11
+FT /product="Orf84"
+FT /protein_id="AAC34185.1"
+FT /translation="MIDSRCFAESTINIVSVSGGKDSLAQWILAVENDVPRTTVFADTG
+FT HEHSQTMEYLDYLESRLGPVIRVKADFTRRIEGKRKFIAEKWPVSLVEECGMSHEQAAE
+FT RIAKALEILKPTGNPFLDLCMWKGRFPSTKARFCSLELKHDSVRDKIVLPALEKYDEVI
+FT LWQGVRAQESPARAALPMWEEDADNTPGLHVYRPILNWTHEDVFALAKRHGIKPNPLYQ
+FT QGCSRVGCMPCIHARKSELAEIFARWPEEIARVAEWERLVAACSRRGNSTFFPSTHDPR
+FT RAEKRIEVVTVEEYGIASYRDWAMTTRGGSQYDLLAATNDKTVCSSVYAGVCE"
+FT variation 25803
+FT /note="am43"
+FT /replace="t"
+FT /phenotype="lethal due to polarity on A"
+FT variation 25845..26288
+FT /note="del444"
+FT /replace=""
+FT variation 26460
+FT /note="am11"
+FT /replace="t"
+FT /phenotype="lethal due to polarity on A"
+FT CDS 26744..28828
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41064"
+FT /note="rolling circle replicase; putative endonuclease;
+FT similar to P2 A protein"
+FT /transl_table=11
+FT /gene="A"
+FT /product="A protein"
+FT /protein_id="AAC34186.1"
+FT /translation="MTGVVYAFPWNAPRSAIASSYLTYDQQHRRDRMFAALLHARKVLF
+FT LQPECVRFDVYRTAAVLEQNQGSQRANAFLISFCKKALPRLELVAKKYECSGINSNVSA
+FT AVFDGHFDTQLMQYLASRMVNMVARFNRLPDMSRADIDLLAADIANFIRAELADIDDTG
+FT FSELKTLYTWYMRAGFISLQFNVTPPKWERVTKKYFCEDEIAPAVMRMFNEVWWRGRLR
+FT RIAAAWREHLQIAVGNVSKKRHAYASKNCVTDWREQKRRTREFLKGLDLEDEEGNRISL
+FT IEKYDGSVANPAIRRCELMARIRGFENICNELGYVGEFYTLTAPSKYHATTKAGYRNSK
+FT WNGASPSDTQSYLTGLWARIRAKLHREEIRIFGIRVAEPHHDGTPHWHMLMFMLPEDVE
+FT RVRLIIRDYAWEEDHYELRSDKAKKARFHAEAIDPEKGSATGYVAKYISKNIDGYALDG
+FT ETDDESGELLKETAPAVSAWAARWHIRQFQFIGGAPVTVYRELRRMADPETARALSVEF
+FT AAVHDAAHYGRWADYVNAQGGPFVRRDDLQVRTLYEPRTEFNQYGEETVCIKGVYDASI
+FT GAGSPILTRLTQWKIVPKRAVDLAVDVKGASAPSRSSVNNCTGSESDPPILDLTKPLSR
+FT RERRELTNRLRKKKPTTRRKFIHGTDKQNVAITKTIDEIHSDNRHHNQPGRSPAPDGRW
+FT "
+FT terminator 26829..26856
+FT /note="tM1; expected terminator for lytic transcripts in
+FT absence of translation of A gene"
+FT /gene="A"
+FT variation 27542
+FT /note="Aam24"
+FT /replace="t"
+FT /gene="A"
+FT rep_origin 28576
+FT /note="located by similarity with P2; consistent with
+FT electron microscopy mapping"
+FT /gene="A"
+FT -35_signal 29020..29025
+FT /note="p95"
+FT promoter 29020..29056
+FT /evidence=EXPERIMENTAL
+FT /note="p95"
+FT /function="SOS-dependent transcription of SOS operon"
+FT -10_signal 29044..29049
+FT /note="p95"
+FT protein_bind 29044..29063
+FT /note="putative"
+FT /bound_moiety="LexA"
+FT variation 29053..29055
+FT /note="cIII"
+FT /replace="tt"
+FT variation 29074
+FT /note="tum9"
+FT /replace="a"
+FT CDS 29082..29522
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41063"
+FT /note="expression repressed by LexA"
+FT /transl_table=11
+FT /gene="tum"
+FT /function="inhibits CI DNA binding"
+FT /product="Tum"
+FT /protein_id="AAC34187.1"
+FT /translation="MDRELNEHVMIERVEMIARLTAEGTCQERDREIALNLIAEIARGN
+FT LMKNNNFSVVFSAPPVGETFAKEGKVKVNITLDKDQKIGQPVIDAFQCELTKRIQSVFP
+FT STRVTVKKGSMTGVELMGFDKDSDREALDSILQEVWEDESWR"
+FT CDS 29109..29522
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41063"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="tum"
+FT /function="modulates SOS induction"
+FT /product="truncated Tum95.2"
+FT /protein_id="AAC34188.1"
+FT /translation="MIERVEMIARLTAEGTCQERDREIALNLIAEIARGNLMKNNNFSV
+FT VFSAPPVGETFAKEGKVKVNITLDKDQKIGQPVIDAFQCELTKRIQSVFPSTRVTVKKG
+FT SMTGVELMGFDKDSDREALDSILQEVWEDESWR"
+FT variation 29115
+FT /note="tum16"
+FT /replace="a"
+FT /gene="tum"
+FT variation 29182
+FT /note="tum13"
+FT /replace="t"
+FT /gene="tum"
+FT variation 29199
+FT /note="tum17"
+FT /replace="a"
+FT /gene="tum"
+FT CDS 29220..29522
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41063"
+FT /evidence=EXPERIMENTAL
+FT /transl_table=11
+FT /gene="tum"
+FT /function="modulates SOS induction"
+FT /product="truncated Tum95.4"
+FT /protein_id="AAC34189.1"
+FT /translation="MKNNNFSVVFSAPPVGETFAKEGKVKVNITLDKDQKIGQPVIDAF
+FT QCELTKRIQSVFPSTRVTVKKGSMTGVELMGFDKDSDREALDSILQEVWEDESWR"
+FT variation 29245..29251
+FT /note="tum14"
+FT /replace="ttttt"
+FT /gene="tum"
+FT CDS 29292..29522
+FT /codon_start=1
+FT /db_xref="SWISS-PROT:P41063"
+FT /evidence=EXPERIMENTAL
+FT /note="truncated Tum - modulates SOS induction of 186
+FT prophage. GTG start codon."
+FT /transl_table=11
+FT /gene="tum"
+FT /product="bacteriophage 186 Tum95.5"
+FT /protein_id="AAC34190.1"
+FT /translation="MKVNITLDKDQKIGQPVIDAFQCELTKRIQSVFPSTRVTVKKGSM
+FT TGVELMGFDKDSDREALDSILQEVWEDESWR"
+FT variation 29391
+FT /note="tum2"
+FT /replace="t"
+FT /gene="tum"
+FT terminator 29545..29576
+FT /evidence=EXPERIMENTAL
+FT /note="t95a; partial termination of p95 transcript"
+FT CDS 29604..30335
+FT /codon_start=1
+FT /db_xref="SPTREMBL:Q37850"
+FT /note="expression from plasmid blocks 186 infection"
+FT /transl_table=11
+FT /gene="orf97"
+FT /product="Orf97"
+FT /protein_id="AAC34191.1"
+FT /translation="MDTVIAFLSLALFIAFIVGLIKPSLVRMPSRKRSSAVYLGGCLAL
+FT GVIGSILWPTEKTQPVAKTDVPAVKAEPATPTFEYADKTLKEYRNEPKETRHEIVKDYV
+FT GFKGVQASATDVFYACMSEYTFTKDDALKLSDVLGWCFNDFEKDPQSLNNKINLDEFQG
+FT NFSGWDGSYRPLEKLIKASMNDDSSYKHVSTVYHLILNKDPHAVVKTTFRGTNAYGGVV
+FT KQTVAARVNVRTGEVDSILDN"
+FT variation 29691..30304
+FT /note="del97"
+FT /replace=""
+FT /gene="orf97"
+FT terminator 30436..30463
+FT /note="t95b; p95 transcript terminator"
+XX
+SQ Sequence 30624 BP; 7461 A; 7801 C; 8456 G; 6906 T; 0 other;
+ ggcgtggcgg ggaaagcatt gcgcgccaga ggtggcgcgt gaatgataaa aattatcgtc 60
+ tgagcgcctc gtaatggcgc tatcgtggtg ctgttggttc gttggtggtc gtgtgtgttt 120
+ gtgcgcgtgt ggcgcgtctg agacgtgatg gtggcggggt atgaaaaagc cgccatgctg 180
+ gcggcttgag agggattatt ccgggttgtc gagggtgtac tctttgaacc tgatgacctc 240
+ catgccgagc cagtcgttta cctccctgaa cctgtcctgc agcggcgaca ggtcgttacg 300
+ cacaaatacc tttgccactt tctcaacgtc accgagcgag ccgatattct cgggcttgcc 360
+ gcccatgagc tggaacggta cgcggtgcgc gtccatcagg tcggcggcgc tggctttctt 420
+ gatgttgaaa aagtcatcct ttgtggcgac ctcgctcagt ggcacgattt taatgccgtc 480
+ cggttttcca ttgggagcgt agaaaaacag gtttttaaaa ttgccgagcc ctttcgagtt 540
+ gcgcatcgcc tcgcgcagcg attcgacgtc ggtcgcgctc tgcgccgggt cggtcacata 600
+ catgatgtaa cccgcatgcg cgccgttctg gtaatacttg cggcggaaca gcgttgcgga 660
+ ttcattcagc caggcggaat taagcgcgct gagatattcg ggcaggccgt aaatctcctg 720
+ attaatgtcg ggctccagca ggtgaaacac ggtatcaggc gcgaattcat gcggcagagt 780
+ gaagttttcc acaaaccaga aaaccgaatc gtcgaccccg cggcgggtgt atttggccgg 840
+ tgaggccagt agcttgatta gctggccggt aacgctgtgg cgctgctcaa gaaaggcgtt 900
+ gccgaatacc agatagtcga gcgcaaagcg gctgaaatcc tgacgggaca gcagcgggtg 960
+ cgggatgtag gtgctcgcga gcacgttgcg cttaacgtaa atcggtgagc tgtgatgtac 1020
+ agcagagcgc aggctctttg ccagcccgga gaagctgacc ggcggctcgt accatttgcc 1080
+ gttactgatg cactcgacat aatccagaat gtcgcgctta tcgagtaccg gcactggctc 1140
+ gccaaaggtg aacgcctcca ttttttgcgg ggcgctggcg gtcatggcta cctgtttgcg 1200
+ tggcttgcgc ttgctcatgc tgccacctca cccgctgcaa cagcgaaaga ccagtcgcag 1260
+ ccaaacagca ggcgataatc atcgtcgctg tattcgtgtt taatttcatc gggcgcaaag 1320
+ agattgcacc cgcgctggca tgctgcatcc agagtgaccg actgacgcca gacaccatct 1380
+ gtacaaaata cgctgtcgcc ggtattgatg agcggtgacg gtcggtgcct gcgggttgtg 1440
+ ccgttccata ccctgaaagc gtcataatta tcagagggcg aggtaaacat cgtcaggctg 1500
+ tggcgtttat ggcaggcgat acccgccgcg actttcgcag ctcttagcgg gttattgaac 1560
+ catccgaact catcaagata gacattaccc gccagtgcgg cgcaatggga ttcctcgccg 1620
+ acaaagctga taaccgcacc gtcgtcgagc tgcaggctgt ggccgttact cgtaagactg 1680
+ acgccgacgc gcgccgaaag gttactcatg tacatcagcg ccacgcgcgc atgctcaata 1740
+ gtgtgagcaa accagacatg attatcgcct gttgtcagcg catcgagcag cgcctcacgg 1800
+ ctaaagagct gcgttgcgcc aatctggcgc gatttggtga tgctgcggtc gatattgagt 1860
+ ttcccgacac gcaaccatgt tgcctgatag tcaaagctgt cattgtgcag aatatcggcc 1920
+ attgcctgaa tctggctttg tgagaaaacg ttatttttca ttaattaaac tccagaatgg 1980
+ atttaggctg tatgccgcta ccggcggaaa gcggttcgtt taacagggcg tgcatggtcg 2040
+ cccatgcaat atcggcgtga ctggcttcct cggtgcggct ggcctcgtag gtggcgctgc 2100
+ gcccgctgct ggtcatggtt ttgcggatgg acataaacga ctgcgtgacg tcggttgctc 2160
+ cggcgtcgta ctccagacag ccgcggcgaa tggtgtcttt tgccttgagt accattgcgg 2220
+ ttttcatttc aggcgtgtaa cggatgccgc gtgcggccgg gtagaatgag cgcaccaact 2280
+ ggaacacgcc gaggccgagg ccggttgcgt caatgccgat gtattcgacg ctgtatttct 2340
+ cggtcagttt gcggatgcca tctgcctgcg cggcaaagtc catgcccttc cactggtggc 2400
+ gctccagcat gcggaacttg ccaccagaaa ccaccggcgg cgcgagcacg acgcacccgg 2460
+ cgctgtcgcc agtgtgtgac gggtcgtagc caatccagac ggggcgagag ccgaacggat 2520
+ ggtcggcgaa cggggcgaag tcctcccatt cttccatcac gtcgaccatg cagcgctgca 2580
+ gctcctcgaa cgggaatacc gacgctttat cgtcgacaaa ctcgcacata aacaggtttt 2640
+ taaagtcctc atcactgttt tcgcgtttga gttggtcgag gtcgaacagg gtgcagccac 2700
+ cggcaagggc gtcctcaatg gtgacaatct gccgccactg gccatcgtcg cagagctggc 2760
+ caccggcgag cgcgcggtga ctgatgtcaa tttcgatgcg gtcggcaata cggctgcgcc 2820
+ ccttgttgaa cagctcgcca gaccagaagg gataagcgcc gtgcgccagc gttgagggtg 2880
+ tcgaaaagta ggttgagcgc agatgcttct gcgaggccat gcccgaggcg actttgcgca 2940
+ gcttctgaaa attcgggatc cagaatattt catcgacata caggtcgccg ttatggctct 3000
+ gagccgtgtt ggagttggta ccgagaaaaa tcagctttgc gccgttgttg ccaatgacaa 3060
+ tcgggtcgcc ggtcaggtcg acgtcaacca gtcgcgcaaa ctgtatgatg tattcgcgga 3120
+ acacgtaagc ctgcgtttta ctggccgaca gaaaaatctg gttatggccg gtcttgagtg 3180
+ ctcgcagcag tgcctcacgg gaaaaataga acgtcgcgcc aatctggcgg gatttgagaa 3240
+ tgtcgcgaat acggtgtgcc agtcctgcgc ggtaccactg caactggtac tcgaaagact 3300
+ ggtcgaaaaa taattcctcc agcttttcga tagcctcgtc gctgaaaaaa ttctttttcg 3360
+ gcttcttgcg ctcacccttg ttgcggttgg cgacgttggg gttaaggtcg gcctcgttgc 3420
+ cggtctggct gtagcggtta acgcgtgcca gtcgttcaat ctgccgcccg agcaggtcaa 3480
+ tctctttgaa gtcaccgcct gacttttgcg gcttggcgat gagctgaatc aggcgcgcct 3540
+ caaggctgct ttcaacgcgg gaaatcggtg cgatgccatc ccagccgtcg cgctgtttcc 3600
+ agctctgcac ggtcgggcgc ttgacctgca gcatttcggc aatctgcggc acggaaaaac 3660
+ cctgccagta aagcagcgat gcctgtcgtc gcgggtcatg caacaaggtt gtatcggtgg 3720
+ aaatggtcat tgatgcctcg ccgtaatgga ttcagggcaa ggctacttaa tggccgtcag 3780
+ tgattcgcta aggtgctgtt gtgtgggcgg ttgtccagtc gtcattggtg gtctggcgtg 3840
+ tcctgagtct ggaaactggc ggtgaccagt aaccccaacc tcaggactcc tgacaatggc 3900
+ aaaaaaagtc tcaaaattct ttcgaatcgg cgtcgagggt gatacctgcg acgggcgcat 3960
+ tatcagcgcc agtgatattc aggaaatggc cgaaacctat gacccgcgtg tttacggttg 4020
+ ccgtatcaac cttgaacacc tgcgcggcct gttgcccgat ggcatattca agcgttacgg 4080
+ cgatgtggtc gagctgaaag ccgagaagat tgacgacgat tctgcgctta acggcaagtg 4140
+ ggcgttgttc gctaaaatca ccccgaccga tgaccttatc gcgatgaata aagccgcgca 4200
+ gaaggtctac acctcaatgg aaattcagcc gaattttgcc aataccggca aatgctacct 4260
+ cgtcggcctt gctgtcaccg atgacccggc gagcctcggc actgaatatc tcgaattctg 4320
+ ccgcactgcg aagcacaacc cgctgcagcg ctttaaagcc caccctgaaa acgtcttttc 4380
+ cgccgccacg ctggccgaac tggaatttga agacgttccc gacacggtgc tcaacagcct 4440
+ ggccgataag gtgaaagcca ttttcagccg taagcaggtc agcgacgatg cgcgcctgaa 4500
+ tgatgtacat gaagcggtga ccgccgtcag cgagcatgtg cagaccaacc tcactgcaca 4560
+ ggataagcgt ctttccgata tggaaaccgc gtttgccacc ttcaaacagg aactgaccgg 4620
+ caaggttgaa gaaaccagcc aggcattttc cgtcctgaaa accactctcg acaaaaccga 4680
+ aagtttcagc cagccgcgac gcacgaaagc cagcggcggt ggtggcgatg agctgctgac 4740
+ tgactgctga taaaccgcag accgaaaccg ggcggaaccc ccgcccgatg ctgtgactaa 4800
+ ccgattaaat caaacaggaa atactatgcg tcaggaaacc cgttttaagt tcaatgccta 4860
+ tctgacccag ctcgccaaac tgaacggcat cagcgttgat gacgtcagca aaaaattcac 4920
+ cgtcgagccg tccgtcacgc aaacgctgat gaacaccgtg caggcgtcat ccgcgtttct 4980
+ gcagatgatt aacattctgc cggtcgcaga aatgaagggt gagaaaatcg gtgtcggtgt 5040
+ gaccggcacc atcgccagca cgaccgacac ctcgggcgac aaagagcgcc agaccgcaga 5100
+ ttttaccgcg cttgagtcca acaagtacga gtgcaaccag attaactttg acttccacct 5160
+ gacctataaa cgcctcgacc tgtgggcgcg ttttcaggac tttcagcgtc gtattcgcga 5220
+ cgccattgtc cagcgtcagg cactggattt catcatggcc gggtttaacg gtaccacccg 5280
+ cgctgacacc tctgaccgtg ttaaaaaccc gatgctgcag gatgtggccg ttggctggct 5340
+ gcagaaatac cgcaatgaag ccccggcgcg tgtgatgagc aacatcaccg acgctgacgg 5400
+ taaagtcgtt tcggcagtga ttcgcgtcgg taaaaacggc gactatgaga acctcgacgc 5460
+ actggtgatg gatggtacca ataccctgat tgacgagatt tatcaggatg acccgaaact 5520
+ cgttgccatc gttggccgta agctgctggc cgacaaatat tttccgctgg tcaacaaaca 5580
+ gcaggaaaac accgagtcgc tcgcggcgga tatcatcatc agccagaagc gcatcggcaa 5640
+ cctgccagcc gtacgtgtgc cgtacttccc ggcgaacgcg gtgttcgtga ccacgctgga 5700
+ aaacctctct atctatttca tggatgagag ccaccgccgc agcattgatg aaaacccgaa 5760
+ aaaagaccgc gtggaaaact acgagtcgat gaacatcgac tatgtggtcg aggcgtatgc 5820
+ cgccgggtgc ctgctggaaa acatcaccct gggcgatttc accgcacctg cagcaccgga 5880
+ aggcggagag taaacccatg acgagccccg cacagcgtca catgatgcgg gtctcggcct 5940
+ ctcaagccgc gcagcgggaa caagccccgc tgcgccatgc aaccgcctat gagcagatgc 6000
+ tggttaagct ggccgatgac cgccgcacgt taaaaaacat ccgttcaaac gaacgtaaag 6060
+ ccgagaaaaa gcgcgagctg ctgccgttct atgcgccgtg ggtcgccggt gtgctgactg 6120
+ atggtcgtgg tgcgcaggat gacattgtta tgaccgtcat gctgtggcgt ctcgatgccg 6180
+ gtgatatcgc tggcgcgctg gaaattgccc cctacgcgct gaagtacggc ctcacctctg 6240
+ accatcgccg cacgacacct tacatgctgg tcgaggaagt ggcacttgcc gcgcagcgcc 6300
+ tgcgcgatgc cggtgagtct gtcgaccttt cctggctgca ggccactatc gacctgaccg 6360
+ acggcgctga cgttcccgat atggtgcgcg cccgtctgca taaggtgaca ggcctgaccc 6420
+ tgcgtgatgc cggtatgaat gcagaggcgc tggcgcagtt tcagcgcgcg atgcagctcg 6480
+ accgcaatgc cggtgtgcgc aaggagattg agcgactgga acgggcattg aagccaaaga 6540
+ cagaggccgc gccccgtaaa acgactaaac cgcgcacgcg taaacctgcc accaaaccgg 6600
+ cagcaaagcg cgggcgtcca ccaaaggcgg caaaaaccgc cggttaactg aacgctcccc 6660
+ gagccgggcg gcacgccggt caaagcaggc aaagacctga cggcgaccgg cgtccaccgc 6720
+ ccaacctgat gaggttgtca tgacgacagt gatactgaac cagcccgacg aaccgcagga 6780
+ cgtaccgggc gtggtgattc ccgcaccgga gacgggcggt gcagtgatta aaaacacgtt 6840
+ ctttttccct gatgtggatc cgaagcgcgt gcgcgaactg atgcgccttg agcagacggt 6900
+ ttccgatgcg cgcctgcgca atgccatcaa gaccggcatg gccgagacca atgcggagct 6960
+ ttacgactac cggctgcgcc agactgccgc cgggtttaag caactggccg acgtgcctgc 7020
+ cgaggaaatc gacggcgaga atgtacgtgt tttccactat ctgagtgctg tgacggcaat 7080
+ ggcaaccgcc accctgtatg agcgctatcg cggcgttgag gccaccggca aaggtgacaa 7140
+ aaaagccgac agcgtggaaa ccaccattga tgacctgtgg cgggatatgc gctggtcagt 7200
+ tgcgcgtctg caggacaagc cgcgctgcat tgtggggcag ctctgatgaa agtcaggtcg 7260
+ atgcagggcg ataccctcga cacgatttgc gccaggtatt acgggcgcac tgagggcgtg 7320
+ gttgagacgg tgctgcaggc taatccgggt ctgtctgagc tgggtgtcat tctgccgaat 7380
+ ggtacagaga ttgacctgcc cgatgtggca tcgtcacccg taactaaaac tatcaacctt 7440
+ tgggagtaac catgacagaa ggtgaaaaag gcgtcctgtc actgtttgtg attggcgtga 7500
+ tgattgttgt tgggaaagtg ctggcaggcg gtgaacccat caccccgcgt ctgtttattg 7560
+ gccgcatgct gctcggtggt tttgtttcaa tggtcgccgg tgttgttctg gtgcagtttc 7620
+ ctgacatgtc actgcccgcc gtgtgcggga ttggatccat gctcggtatt gccggttatc 7680
+ aggtggttga aatcgccata cagcgccgct ttaagtcaca aaagggggaa agtgatgccg 7740
+ gtcattaaca ctcaccagaa tatcgctgcg tttctggaca tgctggcgta ttccgaagga 7800
+ acagcgaacc atccgctgac gaaaaatcgt ggctacgacg tcattgtcac tggccttgat 7860
+ ggcagaccag agattttcac cgattacagc gaccaccctt tcgcgcatgg ccgaccaccg 7920
+ aaagtgttta atcgccgtgg cgagaaatcc acagcctcgg gacgttacca gcagctttat 7980
+ ctgttctggc cgcactatca gaaacagctc gcattgcctg atttcagccc actgtcgcag 8040
+ gataagctcg cgatccagtt aatccgggag cgcggtgctc ttgacgatat ccgggcgggg 8100
+ cgtattgagc gtgctgtttc acgttgtcgc aatatctggg cgtcattacc gggggccggt 8160
+ tacggccagc gcgagcacgg tctcgaaaag ctggtcacca tctggcgcac ggctggcggg 8220
+ gtggtggcat gaaagtcctg ataacgctgc ttgtgatggc cgtgctcggg ttgctgtggc 8280
+ tgcaccatga gaacggcaat ttatcccgct catttgagac ggcaaaccgc gtcgcgagcg 8340
+ agcaaaagac gacgattggg atgctgaaaa atcagctcag tgttgccggt cagctcgccc 8400
+ gacgtaatga atccgcgcag gtgacactgc gcgaacagct cgcaaaggca agtgcagaag 8460
+ ccagccgccg tgagcagacg ataacgaggt tacttaatga aaatgaagcc tttcgccgct 8520
+ ggtataacgc tgctctgcct gatgctgtgc gtcggctgca cacccgaaca gcctgcgcca 8580
+ gtgccggtga ttgtggtcaa cggatgcccg agggtgagcc tttgccctat gccgggaagt 8640
+ gacccgaaaa ccaatggtga cctgagcgca gatatccgcc gtcttgaggg ggcgctgact 8700
+ gcctgcgcgc tgcaggtcaa aaccgtcaaa cactgtcagg atgaactcga tgcagaagca 8760
+ caaaagcctg cgcaaagcgc tgattaacgc cgtgccgcag ctccgaaata accccgatat 8820
+ gctgcgcctt tttgccgaca acggccacac cgattcccga ctggcgagct cgctgtcgtt 8880
+ tgaaaaggtg tatgtgctta acgtggtggt gaccgacttt actggcgacc tcgatttgat 8940
+ attcgtgccg gtgcaggcat ggctgcgtga acatcagccg gacattatga ccaccgacga 9000
+ cgggcgggaa aaaggattca cctggattat tgatatcaat aacgacgatt cgctcgatat 9060
+ cagtatcagc ctgaggctca ccgagcgcac gctcgtcaaa gaggtcgggg gcgcgctgca 9120
+ tgtcagttat gcaccagaac cgccactgcc tgagctggtg aagcgcccgg ttgctatgta 9180
+ tgcaaacggt gaattagtga gccagtggga tgagtgaatt aaccgcgctg caggagcgcc 9240
+ tcgccggtct gattgccagc ctgtcaccgg cggcacgtcg caaaatggcg gctgagattg 9300
+ cgaaaaagct gcgtaccagt cagcagcagc gcatcaagcg ccagcaggca cccgacggca 9360
+ ccccgtatgc cgcacgaaag cgccagccgg tacggagcaa gaaaggccgc attaagcgcg 9420
+ aaatgttcgc caaactgcgc accagtcgct ttatgaaagc caaaggcagc gatagtgcgg 9480
+ cggtggtgga gtttaccggc aaggtgcagc gcatggcgcg ggtgcatcag tacggcctca 9540
+ aagaccgccc aaaccgcaac agccgggatg tgcagtacga ggcgcgcccg ttgctcggtt 9600
+ tcacccgcga cgatgagcaa atgattgaag acgtcattat cagccacctc ggcaaataaa 9660
+ tattgtgtga accaccaccg gaggcgcgtg atttggcgcg gctaaagacc agaggcattc 9720
+ tttgcactat gaatacgtta tccacgatac aggagctcgc gcgtgcgatt cgtaacctca 9780
+ tccgctcagg tgtggtgacg gaggtcgata ccgtgcaggg gctgtgccgc gtacaaagcg 9840
+ gcgggatcca gacgacatgg ctgaactggc tgaccacccg cgccggtcgt tcgcgcacat 9900
+ ggtgggctcc ctcgctcggt gagcaggtgc tgctgctggc aatcggtggc gagcttgata 9960
+ ccgctttcgt gctgccgggg attttctccg acgataaccc cgctccgtct gcctcggcgg 10020
+ atgcgtggca tgtggttttt cctgatggcg cggtcattga gtacgagccg gagaccagtg 10080
+ cactgacggt cagaggcatc aaaactgctg acgtgaccgc gtcggaatcc atcacggcca 10140
+ ctgtgcctgt ggtgctggtg aaagcagaaa cccgcatcac cctcgacacc ccggaggtgg 10200
+ tatgcaccaa caaactgacg acggcaacgc ttgaggtgca gaaaggcggg gagatgagag 10260
+ gcgacattgt ccacaacggc ggcacattta aatcaaacgg tgtgcagctc gacgaccacg 10320
+ gtcacggtgg tgtgcaaaga ggcggtgcct ggacggagga caccaaatga cggcgcgcta 10380
+ tatggggatg aaccgcaaca ccggtctcgg tatcagtgac actgaacaca tcagccagag 10440
+ catgcgcgac attctgctga cgccggtcgg ctcgcgggtg atgcgtcgtg aatatggctc 10500
+ gctcctgtct gcgctgattg atatgccgca aaacccggcg ctcaggctgc aaatcatggt 10560
+ ggcgtgctat tcggccatcc agaagtggga gccgcgtatc aggcttacat ccatcagctt 10620
+ tgagactggt gatgctggcg agatgtatgt cgatattacc gggatgcgta ccgatacggg 10680
+ tgcgtcagtt tcaaccactg tttcactgag ttaaatcact atggcaactg ttgacctgag 10740
+ cctgttaccc gttcccgatg tggttgagga actggatttt gaaaccatcc ttgcggaacg 10800
+ cattgcgacg ctaatttcgc tataccccga agaccagcag gaagctgtag cccggacgct 10860
+ cgcacttgag tctgaaccaa ttgttaaatt gctgcaggaa aacgcctacc gtgaggttat 10920
+ ctggcgtcag cgtgttaatg aagctgctcg cgcaggcatg ctggcttatg ccagagatag 10980
+ cgacctcgat aatctcgggg cgaatttcaa tgttgagcgc ctggtcgtca ggcctgctga 11040
+ tgacaccacc atccccccga cccccgctga aatggagctt gatgccgatt ttcgtctgcg 11100
+ tatacagcag gcatttgaag ggatgagcgt tgcgggatcc accggagctt atgaatttca 11160
+ tggccgcagt gctgacgggc gtgtcgcaga tatttctgtt atcagccctt ccccagcatg 11220
+ tgtcacgata tctgtgcttt cgcgtgagaa taacggtgcg gcgtctgatg agcttcagag 11280
+ catcgtgcgc aatgcgctga atgctgagga cgtgaggccg gttgctgacc gggttacagt 11340
+ gcagtcagct cagattattg actaccagat acgcgcaaca cttttcgttt atccggggcc 11400
+ ggaaaatgag ccgattcgtg cggcggctga ggcgaagctc aaagcttata tcagtgcaca 11460
+ gcacaggttg gggcgggata ttcgcctgtc agcaatttat gccgcgttgc atgttgaggg 11520
+ ggtgcaacgt gtcgaactgg ctgcacctgt ggccgacatt gtgcttgata aaacgcaggc 11580
+ atctttttgc acagactatc agatagtgat tggtggctcc gatgagtgat gtccgcctgt 11640
+ tacctgtagg gtcatcacct cttgaggtgg ctgctgccag agcctgcgca gatattgaaa 11700
+ atacacctgt tccgttacgc cgcctgtgga gtcctgacac ctgtcctgca aatcttttgc 11760
+ cgtggctggc gtgggcgttt tccgttgacc gctgggatga gaactggccg gaaaaaacaa 11820
+ agcgcgatgt tattcgcagc gcgtatttca ctcactgcca caaaggcacg ataggcgctg 11880
+ tcaggcgagt tattgagccg ctcggataca taatcaacgt tacggaatgg tgggagacag 11940
+ gtgacccggc gggaacgttt cgtcttgata tcggtgtgct ggaaagcggt attaccgaag 12000
+ aaatgtattt agaaatggag cggttgattg ctgatgcgaa acctgcgagc cgtcatttga 12060
+ ttggcctgaa tattatccag gatattcccg gttatatgta tacaggtggt gtgagctgtg 12120
+ acggcgacat tattacagtt taccccggat aagtgaggaa taatgagcac gaaatttaaa 12180
+ actattatca ccactgccgg agccgaaaaa ctggcagcgg ctactgtgcc gggtggtaaa 12240
+ aaagtgaata tcaccgtgat ggccgttggt gacggaggcg gaaaactgcc agtgccggac 12300
+ gccggtcagg tgcagctcgt gaatgaggtc tggcgccatg ccctgaataa aatcagccag 12360
+ gacaaccgga acagcaatta cattgtagcc gagctggtta ttccgcccga ggtgggagga 12420
+ ttctggatgc gcgagttggg tctttatgat gacgagggca ctctcattgc tgttgccaat 12480
+ atggcagaaa gctacaagcc agaacttgcc gagggctcag gccgtgcgca gacatgtcgc 12540
+ atggtcatta ttgtcagcag tattgcctca gttgaattat ccattgattc gacaatggta 12600
+ atggcgacgc aggaatatgt tgatgacagg attgcggaac atgagaagtc acgtcgacat 12660
+ cctgacgcca cactgaaaga aaaaggcttt actcaactca gtagcgcaac agacagcgcg 12720
+ tctgaggtgc ttgcggcgac gccgaaagcg gttaaagcgg cgtatgacct tgctaatgct 12780
+ aaatataccg ctcaggacgc gagcacagcg caaaaaggca ttgtgaggct gagtagtgcg 12840
+ gcagacagta ccagtgaagc tgaggccgca acaccgaaag ctgtcaaaat tgcgatggat 12900
+ aatgcgaatg cgaggctggc aaaagaccgg aacggcgctg atattccgaa tccgccgttg 12960
+ tttgtccaga atatcggttt aaaacccacg gtcgataaag ctgctaatgc cgttgataaa 13020
+ aatggcgaca cgatgaacgg aaacctgaca ctcaagggtg attaccggct gagttttatt 13080
+ atccagaatg aagacggttc tattcgtgct tatatcttca aggacaaagg tggcgacggt 13140
+ attcgcatca gtaatggcga tgacggcggc ggtgattttg tttttggtaa aaatggacag 13200
+ ttttactgcc cggatattat gcatgttggt aatacgattg tatggggtga cggaaatatc 13260
+ gagggggcgc gatggggcgg tttgttgagc gactggttaa ctgctcaact ggttgcccgt 13320
+ gacaataata ttaacttgcg agcaccctat gaatgggtta accaaaactt tgtcaaccgt 13380
+ gcacagcgcg gcgcacaggc cagcatgact atggacggcg gacttgtaga ggctccatgg 13440
+ ggatgttttc ttacgggggg gaacggtaac gagggtaatc aggttggagt ggctttatac 13500
+ cgtccattgc agattcttcg caataatact tgggtaacga tagagaactg aaaatgaaac 13560
+ tgattaattt gcaacgctac attctgatga attatttttt aggtgatggc attcagtatt 13620
+ ttatagatgc cacaggtaag gactggtata aatcactgcc caaattcaca aagaaataca 13680
+ gccttgctat cgaaaatgat acgggcgtta ttcgtagtat cagcgaagat gcatcccggc 13740
+ tttatcccgg tggtttgacc gttgttgatg ttgacagtat tccggcaggt tgtgacattt 13800
+ tcggcggatg ggtatttgac ggagagaaag tcattcctcg tgagtacaca ttggccgaac 13860
+ agcaacgcca gtcagatgaa aagaaaaaaa cacttcttgc tgaggcggag gcaacaattt 13920
+ ccacgcttga gcgtgcggta aggttaggca tggctaccgg ggaagaaata aggcgactcg 13980
+ aagcatggga gcgttacagc gtattggtga gcagggttaa gcagtcagat gactggccgc 14040
+ aaaaacctga ataacccggc ggcatttgcc cgcttctttc tcatccatta gttgtgccag 14100
+ acatcatcca gccctgacaa atagcccctc acaagaccag ccaggacaat aacactcgcc 14160
+ cactaactac ggagttaacc ggatgagtga ttttcaccac ggcacgaagg tcatcgaaat 14220
+ aaatgacggt acgcgtgtta tttccacggt cgcaaccgca atcgtcggca tggtctggac 14280
+ agccagcgat gcggatgccg agacatttcc cctcaacgag ccggtactga ttaccaatgt 14340
+ gcagagcgcc attgcgaaag ccggtaaaaa aggcactctg tcagcttccc tgcaggccat 14400
+ cgccgaccag tcaaagcctg tcaccgttgt cgtgcgcgtt gccgaaggta ccggagacga 14460
+ tgcagaagcg cagaccacgt ccaacattat cggcggcacg gatgagaacg gtaaatacac 14520
+ cggtatcaag gcgctgctaa ctgccgaagc ggtcaccggc gttaagccgc gcattctcgg 14580
+ tgtgccgggt ctcgatacgc aggaagtcgc aaccgcactt gcatcggtct gtatcagcct 14640
+ gcgtgcgttt ggttacgtca gcgcatgggg ctgtaagacc atttccgagg cgatggcata 14700
+ tcgcgagaat ttcagccagc gcgagctgat ggtcatctgg cctgatttcc tcgcatggga 14760
+ taccaccgcg aacgccaccg ccacggcata cgccaccgcc cgcgcactcg gtctgcgtgc 14820
+ ctacatcgac cagactatcg gctggcacaa aacgctgtct aacgttggcg tgcagggcgt 14880
+ taccggcatc agcgcctcag tcttttggga tttgcaggca tccggcacag atgctgacct 14940
+ gctcaacgag gccggagtca ccacgctggt gcgcaaggat ggtttccgtt tttgggggaa 15000
+ ccgcacatgc tctgatgacc cgcttttcct gtttgagaac tacacccgaa ccgcgcaggt 15060
+ gctggccgac acaatggctg aggcgcacat gtgggcggtc gataagccca tcaccgcatc 15120
+ gctcatccgt gacattgtcg acggcattaa cgccaaattc cgcgagctga aatcaaatgg 15180
+ ctacatcgtg gacggtgaat gctggttcga cgaggaatcg aacgataagg aaaccctcaa 15240
+ ggccgggaaa ctgtatatcg actacgacta tacaccggtt cccccactgg aaagcctgac 15300
+ cctgcgccag cgtatcaccg ataaatatct ggtgaatctg gctgaatcgg tcaacagcta 15360
+ aggagcctga aacaacatgg cactaccccg caaacttaaa tatctgaaca tgttcaatga 15420
+ cggccttagc tacatgggcg ttgttgaatc cgtgacgctg ccgaagctga cccgcaagct 15480
+ cgaaaactat cgcggcggcg gtatgaatgg cgctgcagcg attgacctcg gcctcgacga 15540
+ tgatgcgctt actgtcgaat ggtctgtcgg tggcctgcct gatgtggcgc tgtgggcgca 15600
+ gtatgccgcg ccgggggctg atgccgtgcc gctgcgtttt gctggctctt accagcgtga 15660
+ cgacactggc gaaatcgttg cggtcgaggt ggtcatgcgt ggccgtcata aagaaatcga 15720
+ cggcggcgaa aataagcagg gtgaaaatac ctcgaccaaa ctgtcgaccg tttgcaccta 15780
+ ttaccgcctc acgattgatg gtagcgacat tatcgaaatc gacaccgtca acatggtcga 15840
+ gaaggtgaac ggcgtcgacc gtctggaaca gcaccgccgc gcaatcgggc tgctgtaatt 15900
+ ccctgaccgg tcagcactgc tggccggtta ttacccccat tcagagcaga gaaaaaatca 15960
+ tggcaaaagc accacgcaaa acccctgaat ttattgatac ggctggcaat gaaattgaca 16020
+ ccgtaaaccc gaatgtcgtg accctcgaca agccgattaa acgcgccggt cagacaattg 16080
+ aaaaggtcac gctgattgaa ccgaacgcag gcaccctgcg cggcgtcagt ctggcggcgg 16140
+ tggcgcagtc cgaggtcgat gcgctgatta aggtgctgcc ccgcatgacc tacccggcac 16200
+ tcaccacgca ggagctcacc gcaatgaacc tgcccgatat gctgtcgctg gccgctaagg 16260
+ tgattggttt tttgtcaccg gcttcggcgg aatagacttc ccgcccggcc tgtcgaccga 16320
+ tgacctgatg gcggatatcg cagtgatatt ccactggccg ccatcagagc tctattccct 16380
+ gagcctgacc gagctcatca catggcgcga aaaggcgctg cagcgtagcg gaaaccacaa 16440
+ tgagtaataa cctgaggctt gaggtattgc tgaaagcggt cgaccaggcg acccgaccgc 16500
+ ttaaatccat ccagaccgcg agtaaaagcc tgtcgggcga tattcgcgac acacaaaaag 16560
+ ggctgcgtga cctgaatggt caggcgtcga aaatcgacgg ctttcgtaag gcaagcgcgc 16620
+ aactggccgt aaccagtcag gcgcttgata aggcgaaacg cgaggccggt gagctggccg 16680
+ tgcagtttaa aaacaccacc aatccgaccc gcgcgcaggc gcaggcactt gaagcggcaa 16740
+ ggcgtgccgc ctctgagttg cagacgaaat acaacagcct gagaacgtcg gtacagcgcc 16800
+ agcgctccga gctgatgcag gccggtatta atacccgcac tctctctgca gatgagcgtc 16860
+ ggctcaaaac ctccatcagc gaaacaactg cgcacgttaa tcgacaacgt gaggcactgg 16920
+ cgcgcgtcag tgcgcagcag gcgaaattaa gccgggtgaa agagcgatat aaatcaggca 16980
+ aggagcttgc cggtaacatg gccgcagcag gcgctgcggg gtcggtatcg cgacacggaa 17040
+ cgatggccgg ggttaaatta ctgatgcccg gttatgactt tacgcagaaa aattccgagc 17100
+ tgcaggctgt gctcggggtc gataagcagt cgccagaaat gcaggcgtta cgcaaacagg 17160
+ cgcgccacgt cggcgacaat actgcagcct ctgcagatga tgcagcaagc gcgcaaatca 17220
+ tcattgcgaa aagcggcggt gatgcagctg ccattcaggc gcgacgccga gtcacgctga 17280
+ atatggcgct gtcaaaccgg cgcacgatgg aggaaaacgc agcgctgctg accgggatga 17340
+ aatcagcgtt tcagctttca aacgacaaga ttgcgcacat tggcgacgtt ctctcgatga 17400
+ cgatgaacaa aaccgccgcc gattttgacg gactgagcga cgcgctgacc tatgccgcac 17460
+ cggtggcaaa aaatgccggg gtgagcatcg agcaaaccgc cgcaatggtc ggtgcactgc 17520
+ acgatgccaa aatcaccggg tcaatggcgg gcacgggtag ccgcgccatt ctcagccgcc 17580
+ tgcagctccc accggaaaaa gcgtttgagg ccattaagga gctcggcgtc aaaacgtcag 17640
+ acagcaaggg gaacacgcgc ccgatattct ccatcctgaa agaaatgcag cgcagctttg 17700
+ agaaaaacaa cctcgggaca agccagcgcg gcgagtatat gaaaaccatt ttcggcgagg 17760
+ aggccagctc ggcggcggcg gtactgatgg aagccgcctc aagcggcaaa cttgaccggc 17820
+ tcaccgctgc gtttaaagcc tcggacggta aaaccgagga actggttaag gttatgcagg 17880
+ ataacctcgg cggcgacttt aaagagttcc agtctgctta tgaggcagtc ggtactgacc 17940
+ tttttgacca gcaagagggc tcgctgcgta aactcaccca aaccgccacg caatacgtgt 18000
+ taaagctcga cggctggatc cagaagaaca aagggctggc gacaaccatt ggcatcatcg 18060
+ ccggtggcgc tctagctctg attggtatca tcggcggtat tggcctcgtt gcgtggccgg 18120
+ ttgttatggg gattaacgcc attatcgctg ctgctggcgt gctgggtacg gtctttactg 18180
+ ttaccggtag tgccattgtg accgcacttg gcgcgattac ctggccgatt gtcgcagtgg 18240
+ gggcggctat tgtggctggt gcgttactca tccgtaaata ttgggagccc atcagcgcat 18300
+ ttttctcggg ggtgattgag ggcatcatga gtgcctttgc accggtcgca gaaatgttcg 18360
+ ctccactggc acccattttt gacggtctcg gtgagaaact gcgcggcgtc tggcagtggt 18420
+ ttaaagacct gatagcaccg gtcaaagcca cgcaggaaac gctcgatagc tgcaaaaatg 18480
+ tcggcgtcat atttggtcag gcgctggcct ctgctttgat gcgtccgctc aatgtattta 18540
+ acaagttgcg cagcggtgtc gactggcttc tcgaaaagct cggtatcatc aacaaagagt 18600
+ cagacaacct cgaccagact gccgccaaaa ccaacgccgc cacgcagggt aattcctaca 18660
+ tcccggcaac cagcacatat ggcggctatc aagcttacca gccagttacc gcaccggcgg 18720
+ gacgctctta cattgaccag agtaaaagcg aatacaaaat cactctgccg ggaggtgctg 18780
+ cgccggggca tcagcttgac agacagctac gcgacacgct cgaacagatt gagcgcgaaa 18840
+ agcgtgcgcg tcagcgtgcc agtatgagcc atgactgaga ggaataaacg atgatgcttg 18900
+ cgcttggaat gtttgtgttt gaacgtcgca ccctgcctta tcagtcgatg cagcactcga 18960
+ aggattaccg ctgggcgtct aatgaccggg tgggtaagcc gcctgcttat cagtttctcg 19020
+ gcgaggggga aacgtcgata cagcttgccg gtacactgta cccagccatc accggcggct 19080
+ ggatctcact aaaggctgta gaggtaatgg ctaacgaggg cagagcgtgg ccgttgattg 19140
+ agggaactgg aaacatttta gggatgtata tcgtcgataa ggtgtcgacc acgcacgccg 19200
+ agtttttcag cgacggcgct gccagaaaga ttgatttcac cctttcgctt aaacgggtcg 19260
+ acgaatcact gacggcaatg tttggcgacc tgaataagca ggccagcgag cttctaggct 19320
+ ctgccggaaa tctgactgat aagctgcaga gtgcgctcgg aggactgacc gcatgattac 19380
+ gggcatgact attgacgccg gaactagcct tgcaccggca tttatgttaa cgctgaacag 19440
+ ccaggacatt accagcaatt ttagtgaccg gctgatttct ctcaccatga cagacaaccg 19500
+ gggctttgag gctgaccagc tcgacattga gctcgacgac accgacggca aagtcgaatt 19560
+ accactgcgc ggggcggtgc tgacgttgtg gcttggctgg cagggttcgg cgcttctgaa 19620
+ taagggcgat ttcacggtcg atgagattga gcaccggggc gcgcctgata tcctgaccat 19680
+ ccgcgcgcgt agtgcagact ttcgcggaac gctcaattca cggcgtgaag aatcatggca 19740
+ cgatactacc atcggtgagt tggtcagcac cattgcaaag cgcaataaac tgacggccag 19800
+ tgtcgcggat tcactgaaaa aaattccggt accgcatatc gaccagtcgc aggagtccga 19860
+ cgccgtattt ctgacccgac tggctgaccg caatggggcg acggtgtcag tgaaagcggg 19920
+ gaaactcctg tttctgaaag ccggtagtgc gatgacggcc agcggcaagc ccgtcccgca 19980
+ aatgacacta actcgcaacg atggtgaccg tcatcagttt gctattgccg accgtggggc 20040
+ ttacaccggc gtaaccgcaa aatggttgca caccaaagac ccgaagccgc aaaagcagaa 20100
+ agtaacactg aaacgcaagc caaaagagaa gcacctgcgc gcactggagc acccgaaagc 20160
+ aaagccagtc agcaaaaaga caaaggccaa aaaagagccg gaagcgcgcg agggtgagta 20220
+ tatggccggt gaggccgata acgtgctggc gctgacgacg gtctacgctt ctaaggcgca 20280
+ ggcgatgcgt gccgctcagg ctaagtggga taagctgcag cgaggcgttg cggagttttc 20340
+ aattacgctg gcgcttggta gggctgattt attccctgag acaccggtgc gcgtatcagg 20400
+ ctttaagcgc gtcatagatg agcaggcatg gttaatcagt aaggtaactc acaatctgaa 20460
+ taatagcggc ttcacgacgg gcttagagct tgaggttaaa ctctctgatg tggagtacaa 20520
+ cgcggaatcg gatgatgaat aaaatgtatt cacaaaaagt gaatttatga ttatcattta 20580
+ ttcacgaatt gagaataaag ggtgggttat gtttcattgt ccgaagtgcc atcatgccgc 20640
+ acatgcgcga acaagccgct atctaaccga aaacacgaaa gaacgctacc accagtgcca 20700
+ gaacatcaac tgtagttgta cgtttatgac aatggaaacg atagagcgct ttattgttac 20760
+ tccgggagcc attgacccgg caccgcctca cccgactgtc ggtggtcagc ggccattgtg 20820
+ gctctgataa atttccgcta aatgcccgcc gcgtgcgggt ttttttatgc actcaggaaa 20880
+ gtggcggtaa aaaatccacc gccattctat cgccactcga aaacgaggca acaaaaaggc 20940
+ cactcgagag agtggcctaa ctgtatgtat ttactactta aatttggtgg cccctgctgg 21000
+ acttgaacca gcgaccaagc gattatgagt tcctacaaga acaaccgaaa atcaatagta 21060
+ tgcgttattt atcattgaca tagattgcca ttgtttgcca ataattacct attattcgcc 21120
+ atttctaccg ccactttatc gccattctat tatctgttac tcagaaccat cgccgacata 21180
+ ggttccatca ggtgcgagat gatatcttcc accaacataa gtcccatctg gggcaagtgt 21240
+ tgggcggcca gcaacataac ttccatttgg cgctaagcgt ggaacgccac cgacataagt 21300
+ tccatcgggt gcaaggcgtg gtgctcctcc tccaacataa gtcccattag gggcaagcat 21360
+ aggttgtccg taaacatagg taccatcagg tgctaatcga actgacatac aacctccata 21420
+ acttatttgc tgttagtaat gtgaactaaa ggatttagtt taactgcatc ctctaaatgg 21480
+ tcgggtgcaa agtgcgcata tcgcatggtc atttttatat ctgtatggcc gagtacgcgc 21540
+ tgcaacacca aaatattacc gccattcatc ataaagtgac tagcgaaggt gtgacgtaaa 21600
+ acgtgggtaa gttgtcctgc cggtagttcg atacctgttc tttccaaagc tgaccggaac 21660
+ gcgccataac aatcactgaa caaccggccc tttttatcat caggcagaga ctcatagagc 21720
+ tctttgctga ttgggacggt gcgatttttt ctacctttcg tgttggtgta tgtgattttg 21780
+ tatttcgcga gttggctttt tctcagactc tcggcctcag accaccgtgc gccagttgcg 21840
+ agacagattc ttaccacggt ttctaaatca gggtggtcat gtcggttaca ctctccgagc 21900
+ agttgcgaaa tttggtcgtg agttagccaa gtcatttcca tttcttctgt gcggaatggg 21960
+ cgcatatttt ttagtgggtt ttcacccttc cattctccga ggcggtttag ctcattgaac 22020
+ accgcccgga agtaggccag ctcaagatta agcgtgcgag gcgatacctc tttcactctg 22080
+ tttgaacggg catactcacc ttttaaccgt ttttctcggt agcgggaaaa catctgcgca 22140
+ tcgaaatcgc gtgcgagtgg ttcgcccata cactcaaaag catggtgcat ggctaactgg 22200
+ cgtttcaaac catctttcag tgtaatgcca tgagcgctat accatgaatc aaccagctct 22260
+ tttaacgtgc gcctgtcttc cttttcttcc tgccacgggt tttgaacggt gtactgctca 22320
+ aacgccagag cctcgccttt agtagcgaat ttctttctga tacgtttgcc ttttgcaccg 22380
+ tttgggtaga gttcacaaat ccaaccgcca gccggatttt tacggacggt cattagttaa 22440
+ cctcgctgta tacacccacc acacgcccca acgttttaat atcatcaatg ccgcattcga 22500
+ aaggaacctt cccgcctgca acatgtagtt ttctacccgg tagttttgtt aactctcgaa 22560
+ tgcttattgc tccctcaatg tcgactagcc ataagccgtc agacaatgat gcttgcttgt 22620
+ ccacaaaata aattttcccc tcggaacgga tagccatccc atctgtgagc ggttttgtga 22680
+ aaaattgggc atcaacactc aattgtttat cggatttgag gatttcttca cttaatgtga 22740
+ atccctcaat cctttttgcg tcgctcgatt ctctgttatt tacaaatgct tctccttctc 22800
+ cggtaagtaa ccactggaga ttagcacctg tttcaagggc acagtgagcc gcaaagtcat 22860
+ aggagatagc gcctcgggtg tacctgtttg acaatgagct ggacgcgata tcgaagtggt 22920
+ tagctaattg aattttctgc gaaaatccgt acgcctcgca gatgcggtca agtacatcca 22980
+ cgttgctcca tcctaaagaa tctattctca tttcgataaa acctatttac tatctctcaa 23040
+ ttgggagata tattttggct aaacccacgc aattgatggc aagtgttggc aaacagagtc 23100
+ aaatcaattg caaactttgg ctaataggga atcatgcaat atggcttctg aaatcgcaat 23160
+ catcaaagtg cctgcaccta tcgttactct gcaacaattc gcagagcttg agggtgtttc 23220
+ tgaacgcacc gcctaccgct ggacaaccgg cgacaaccct tgtgtaccaa tcgaaccccg 23280
+ cacaatccgt aaaggctgca agaaagcagg tggcccgatt cgcatttatt acgcacgctg 23340
+ gaaagaagag cagttgcgta aggcgttggg acattcccgt tttcaactcg tcatcggtgc 23400
+ ttaattcact ttatgtgaat tgtaaggatg caacatgttt gattttcagg tttccaaaca 23460
+ tccccactat gacgaagcgt gccgggcttt tgcgcagcgt cacaacatgg cgaagctggc 23520
+ cgagcgtgcg ggtatgaatg ttcaaacgtt acgtaacaag ctcaacccag aacagcctca 23580
+ ccagttcacg ccgcctgaat tgtggctgct gactgacctg accgaagact caaccctcgt 23640
+ tgatggtttt ctggcgcaga ttcattgtct gccatgcgtg ccggttaatg agctggctaa 23700
+ agataaattg cagtcttacg tcatgcgcgc aatgagtgaa ctcggtgaac tggcgagcgg 23760
+ tgcggtatct gatgagcgtc tgaccactgc ccgtaagcac aacatgattg aaagcgttaa 23820
+ ctccggcatt cgcatgttgt cattgtcggc tctggcgctg catgcacgtc tgcagactaa 23880
+ tcccgctatg tcgagcgtgg tcgataccat gagcggtatt ggcgcatcgt ttggtctgat 23940
+ ttgaggtgcg tatgctgaaa agtgaaccgt catttgcgtc tctgctcgtt aagcaaagcc 24000
+ ccggtatgca ttacggccac ggctggatcg caggtaagga cggcaagcgc tggcacccgt 24060
+ gccgctcaca gtccgaatta ttaaaagggc tgaaaacaaa gtcgccgaaa tcgtcaggtt 24120
+ ttttaattat tcgtattgtc cactttgtaa ttaaaggagt gaaacatgtc acgcgatgaa 24180
+ ttaagaattg ttttgggtgc catgattcca aatatggagg aaggttttga aattaaaacc 24240
+ cgcgacggcg caatacttcg cgttgaccct gagtgggagt gctgcaaaga atttaaggat 24300
+ ggattaaaag ccgaaatcat caagcagtta aaaagcaaac ctgctgttgt atttggatat 24360
+ agttaattaa ttaaacgtaa ttacttggcg taaacccgcc gggcattctt ttgccaaaaa 24420
+ acaggaggat atatgagtcg aactatttat ttatcaacgc cgagtggtgc tggcgaccac 24480
+ ttgctggagt ctttgtttaa agaagccaaa aaagaagagc gcaaagaccg ccgtctcgcc 24540
+ gtttcaatcc gtctcgaaga tctggccgtt cacattacca attcagatat gacaggcaaa 24600
+ gaagcggccg agctactgcg ccgcgaagcc actcgctttg agaacgaatc acaggagctt 24660
+ cactaatggc cgacgcaatg gatttagcac aactgcgcga gcaggaagac cgcgaacgcc 24720
+ acataagcaa cgcgcgcagc cgtcgccatg aggtttctgc atttatctgt gaggaatgcg 24780
+ atgcacctat cccggaagcg cgccgccgag ccataccggg cgtgcagtgc tgcgttacct 24840
+ gtcaggaaat cttagagctg aaaagtaaac attataacgg aggtgcttta tgagcattac 24900
+ caatgcaact attagccagc gtgcaaaaaa atggcttgaa gatgaccgta tatttattga 24960
+ caccgaaact acgggtttgg gtgatgatgc ggaaatagta gaaatctgtt taatagatag 25020
+ cgctggtttt atcatgctaa atacattggt taaaccaact aaaccaattc cagcagaggc 25080
+ tacggccatt catggaataa ctgatgaaat ggttatgtat gcgccaacgt ggaaagatat 25140
+ tcacggcgca gtagcttctt tattttttga gtatggcttt gttatttata acgccgatta 25200
+ cgacacaaga cttatatatc aaactgcgaa attatatggg cttgagaatg acggcttttg 25260
+ ttatttttta aatgagcgtt cggcctgcgc catgatgcta tatgcagagt atcgcggcga 25320
+ gccagggcga tttaaaggtt ataaatggca caaattagtt gatgccgctg cacatgaagg 25380
+ ggttagcgtt gaaggaaagg cacaccgtgc attagcagat tgccggatga ctcttggcat 25440
+ tatcgacgct ttggcaaaag gcggtgcagc atgagtatcc gtatcgaaat aggtgataaa 25500
+ tgggtaatca ccagcgacca atatcaattc atcctgaatg aaaaaaaagt cgttaagacc 25560
+ ggcaataaag ctggcgagga atggctcgac accatcggtt attacccgaa gattaatcag 25620
+ ctcatttctg gtctggtaca tcaccacatt catacggcaa tgattatttc ccttagtgca 25680
+ atggcagagg aaatagagaa gttatctttt atctgtgaag aagcatttaa ggcggttaaa 25740
+ aaatgattga ttcccgctgc tttgctgaaa gcacaataaa tattgtttct gtttctggtg 25800
+ gaaaggacag ccttgctcaa tggattcttg cggtagagaa cgacgtaccg cgcaccactg 25860
+ tttttgcaga taccgggcat gagcattccc aaacaatgga gtatctggat tatcttgaat 25920
+ ccagactcgg cccggttatt cgagtgaaag ccgattttac tcggcggatt gaaggcaaac 25980
+ ggaaattcat tgctgaaaaa tggcctgtct ctctcgttga agaatgcgga atgtctcatg 26040
+ agcaggctgc agaacgaatc gcaaaggcac tggaaatcct taagccaacc ggtaatccgt 26100
+ ttctcgattt gtgcatgtgg aaaggacggt tcccgagcac gaaagcaagg ttttgttcac 26160
+ tggaactgaa acatgactca gtacgggaca agattgtact cccagcgctg gagaaatatg 26220
+ acgaagtaat tctatggcag ggtgttcgtg ctcaggagtc accagcccgc gctgcgttac 26280
+ ctatgtggga ggaggatgca gataataccc ccggtttgca tgtgtatcgc ccaattctta 26340
+ actggacaca tgaagacgta tttgccttag ctaaacgaca cggaattaaa ccgaacccac 26400
+ tctatcagca aggttgtagc agagttggct gcatgccatg tattcatgca agaaaatctg 26460
+ agctggcaga gatttttgct cgctggccgg aggagattgc gcgcgttgca gagtgggaac 26520
+ gtcttgttgc tgcctgttca cgtcggggaa actcaacatt tttcccttcg actcacgacc 26580
+ cgcggcgagc agaaaaacgt attgaagttg ttaccgtaga agaatatggg atagcttcat 26640
+ atcgtgactg ggcgatgact acgcgtggcg gttctcagta cgatttgctc gctgctacaa 26700
+ acgacaaaac tgtgtgcagt agcgtttatg ccggtgtatg tgaatgacgg gtgtcgttta 26760
+ cgcgtttccg tggaatgccc cacggtcggc aatagccagc tcatatctta cctatgacca 26820
+ acagcatcgc cgcgaccgta tgttcgcggc tttgctgcat gcgagaaagg tgctttttct 26880
+ ccagccagaa tgtgtgcgct ttgacgttta tcgcaccgct gcagttctgg agcaaaatca 26940
+ gggcagtcaa cgagccaatg cctttttaat cagcttctgc aaaaaggcat taccacgtct 27000
+ tgaactggtc gcaaaaaaat acgagtgctc gggcatcaac agcaatgtat cagccgctgt 27060
+ tttcgatggt cattttgata cccagcttat gcaatatctg gcgtcacgca tggtcaatat 27120
+ ggtcgccaga tttaaccgcc tcccggatat gtcgcgcgcc gatattgacc tgctggccgc 27180
+ ggatatcgct aattttattc gcgctgaact ggccgacatt gatgacaccg gatttagcga 27240
+ actcaaaacg ctgtacactt ggtacatgcg cgccggtttt atttccctgc aattcaacgt 27300
+ tacaccgccg aaatgggagc gtgtgactaa aaaatatttt tgtgaggatg aaatcgcacc 27360
+ ggcagtaatg cgcatgttta atgaggtttg gtggcgcggc cgcttgcgac gcattgcggc 27420
+ tgcatggcgc gaacatctgc aaattgcagt cggcaacgta agcaagaaac gacacgcata 27480
+ cgcgagtaaa aactgcgtca ccgactggcg cgagcagaag cgccgcacgc gcgaatttct 27540
+ caaggggctg gatctcgaag acgaagaagg caaccgcatc agtctgattg aaaaatacga 27600
+ cggctcggtc gctaatccag caatacgccg ctgtgagctg atggcccgca ttcgtgggtt 27660
+ tgaaaatatc tgtaatgagc tcggttatgt cggggagttc tatactctga ctgcaccgtc 27720
+ taaatatcac gccaccacca aagcgggcta ccgtaacagc aaatggaacg gtgcaagccc 27780
+ gtcagacacg cagagctatc tcacaggcct ttgggcacgc atacgcgcca agctgcaccg 27840
+ ggaagaaatc cgcattttcg gaatacgcgt cgctgaaccg catcacgatg gaacgccgca 27900
+ ctggcatatg cttatgttca tgttgccgga agatgtcgag cgtgtgcgac tcatcatccg 27960
+ agattatgcg tgggaggaag accactacga actgagaagc gataaagcca aaaaggcgcg 28020
+ cttccatgct gaggccattg acccggaaaa aggcagtgct actggctatg tcgctaaata 28080
+ catttccaaa aatatcgacg gttatgctct cgatggtgaa accgatgacg aaagtggtga 28140
+ gttgttaaaa gagactgcac ccgccgtttc agcatgggcg gcgcgctggc acatccgtca 28200
+ gtttcaattt atcggcggtg cgccggtgac ggtatacagg gagctacgca gaatggctga 28260
+ ccctgaaaca gccagggcgc tcagtgttga attcgccgca gtgcatgatg ctgctcacta 28320
+ tggacgctgg gctgattatg tgaatgctca aggcggacca ttcgttcgcc gtgacgattt 28380
+ acaggtacgt acattgtatg aacctcgaac tgaatttaat cagtatggcg aagaaactgt 28440
+ gtgcatcaaa ggtgtctacg atgcctcgat aggtgctggc tctcctattc taacccggtt 28500
+ aacgcagtgg aagattgttc caaagcgtgc cgttgatttg gccgttgacg ttaagggcgc 28560
+ ttctgcgccc tctcggagtt ctgtcaataa ctgtacggga agcgaaagcg atccaccgat 28620
+ actcgattta acaaaaccgc tgagtcggcg tgaaagacga gagttgacga accgactcag 28680
+ gaagaaaaag ccaacaacac ggcgaaaatt catccacgga acggataagc aaaacgtcgc 28740
+ tataacgaaa actatcgacg agatacactc tgacaaccgg catcacaatc agccggggcg 28800
+ aagccctgca cctgatggcc ggtggtaaaa gttgttttaa cggtcgatgg gtgcgcggaa 28860
+ cgtcaaaagg tgaaatcttt gctgcagctc cttcacatca ggcgagacgc ggaaaatcct 28920
+ taatcgtgtt gcagatttag ctgagctggc aacgaaaatg taaccgctaa tattcatcca 28980
+ tatcatgtac atacagtgta tttaactgtg atttttttct tcacaccttt tgccaatacg 29040
+ tgctactgta tgtttataca gtatctcgta gtggaggttg tgtggataga gagctaaatg 29100
+ agcacgttat gattgagcgg gtcgaaatga ttgcgcgtct gactgctgaa ggtacttgtc 29160
+ aggaaagaga ccgtgaaatc gcattgaatc taattgcgga aatagcaaga ggcaacctaa 29220
+ tgaaaaataa taatttttct gttgtttttt ccgcaccgcc tgttggtgaa acatttgcaa 29280
+ aggagggcaa agtgaaagta aatatcacgt tggataaaga ccaaaaaatc ggccagccgg 29340
+ taattgatgc ttttcagtgc gaattgacca agcgaataca gtccgttttc ccgtcaacgc 29400
+ gcgttactgt taaaaaggga tccatgaccg gtgtcgagct gatggggttc gataaagatt 29460
+ cagaccgcga agcgctggat agcatccttc aggaagtgtg ggaagatgag agctggcgtt 29520
+ aatccctgaa aaatgtgcaa ccatcgaccc catgtttgat agcatggggt tgttttgtat 29580
+ gggattacac acaaaggaaa atcatggata ccgtaatagc atttttatct ctggctctct 29640
+ ttattgcttt tatcgtcggg ttaatcaagc cgtcgctggt tcgaatgccg agccgtaagc 29700
+ gctccagtgc tgtttatctc ggtggctgtc tggcgctggg cgttattggc tcaatcttat 29760
+ ggccgactga aaaaactcag ccggtggcaa aaactgacgt accggcggtt aaagcggaac 29820
+ cggctacgcc aacgtttgag tacgcagata aaaccctcaa agaatatcgc aacgagccaa 29880
+ aagaaacccg gcacgaaatc gttaaagact atgttggatt caaaggtgtg caggccagcg 29940
+ ctaccgatgt tttttatgcc tgtatgagcg agtacacttt taccaaagat gatgcgttaa 30000
+ agctcagtga tgtgttgggg tggtgtttca acgacttcga gaaagatcca caatctctga 30060
+ ataataaaat caaccttgac gaatttcagg gtaattttag cggttgggat ggctcttatc 30120
+ gcccgttaga gaagctgata aaagccagta tgaatgatga ttcctcttat aaacatgttt 30180
+ caacggtcta ccatctgatt ttgaataaag acccgcatgc cgttgtaaaa acaacgtttc 30240
+ gcggcactaa tgcttatggt ggcgtggtca aacagaccgt agcagcacgc gtcaacgtgc 30300
+ gaacgggcga ggtcgattca atactcgaca attaaacatg acaaacgccg ccggtgctga 30360
+ aactcgcttt cagtgctggc ggggttgaac aacgagcccc gcgaggcgtt agcctacccc 30420
+ tgagcaaccg cccaagaccg gtactattaa agccggtttt tttatgccac ttttccacga 30480
+ atttcccgtt tttttagccg tgcatgcaac aggtgcattg ttttgcatgc gtcaggcttg 30540
+ cccgttctgg ttgtgcgtcg ccagagctgg cgcggctcca gagtggtcat gcaactgcat 30600
+ taaaaccgac ccataaagtg ggca 30624
+//
diff --git a/etc/b132222.fasta b/etc/b132222.fasta
new file mode 100644
index 000000000..03a6c6251
--- /dev/null
+++ b/etc/b132222.fasta
@@ -0,0 +1,512 @@
+>B132222 U32222 Bacteriophage 186, complete sequence.
+ggcgtggcggggaaagcattgcgcgccagaggtggcgcgtgaatgataaaaattatcgtc
+tgagcgcctcgtaatggcgctatcgtggtgctgttggttcgttggtggtcgtgtgtgttt
+gtgcgcgtgtggcgcgtctgagacgtgatggtggcggggtatgaaaaagccgccatgctg
+gcggcttgagagggattattccgggttgtcgagggtgtactctttgaacctgatgacctc
+catgccgagccagtcgtttacctccctgaacctgtcctgcagcggcgacaggtcgttacg
+cacaaatacctttgccactttctcaacgtcaccgagcgagccgatattctcgggcttgcc
+gcccatgagctggaacggtacgcggtgcgcgtccatcaggtcggcggcgctggctttctt
+gatgttgaaaaagtcatcctttgtggcgacctcgctcagtggcacgattttaatgccgtc
+cggttttccattgggagcgtagaaaaacaggtttttaaaattgccgagccctttcgagtt
+gcgcatcgcctcgcgcagcgattcgacgtcggtcgcgctctgcgccgggtcggtcacata
+catgatgtaacccgcatgcgcgccgttctggtaatacttgcggcggaacagcgttgcgga
+ttcattcagccaggcggaattaagcgcgctgagatattcgggcaggccgtaaatctcctg
+attaatgtcgggctccagcaggtgaaacacggtatcaggcgcgaattcatgcggcagagt
+gaagttttccacaaaccagaaaaccgaatcgtcgaccccgcggcgggtgtatttggccgg
+tgaggccagtagcttgattagctggccggtaacgctgtggcgctgctcaagaaaggcgtt
+gccgaataccagatagtcgagcgcaaagcggctgaaatcctgacgggacagcagcgggtg
+cgggatgtaggtgctcgcgagcacgttgcgcttaacgtaaatcggtgagctgtgatgtac
+agcagagcgcaggctctttgccagcccggagaagctgaccggcggctcgtaccatttgcc
+gttactgatgcactcgacataatccagaatgtcgcgcttatcgagtaccggcactggctc
+gccaaaggtgaacgcctccattttttgcggggcgctggcggtcatggctacctgtttgcg
+tggcttgcgcttgctcatgctgccacctcacccgctgcaacagcgaaagaccagtcgcag
+ccaaacagcaggcgataatcatcgtcgctgtattcgtgtttaatttcatcgggcgcaaag
+agattgcacccgcgctggcatgctgcatccagagtgaccgactgacgccagacaccatct
+gtacaaaatacgctgtcgccggtattgatgagcggtgacggtcggtgcctgcgggttgtg
+ccgttccataccctgaaagcgtcataattatcagagggcgaggtaaacatcgtcaggctg
+tggcgtttatggcaggcgatacccgccgcgactttcgcagctcttagcgggttattgaac
+catccgaactcatcaagatagacattacccgccagtgcggcgcaatgggattcctcgccg
+acaaagctgataaccgcaccgtcgtcgagctgcaggctgtggccgttactcgtaagactg
+acgccgacgcgcgccgaaaggttactcatgtacatcagcgccacgcgcgcatgctcaata
+gtgtgagcaaaccagacatgattatcgcctgttgtcagcgcatcgagcagcgcctcacgg
+ctaaagagctgcgttgcgccaatctggcgcgatttggtgatgctgcggtcgatattgagt
+ttcccgacacgcaaccatgttgcctgatagtcaaagctgtcattgtgcagaatatcggcc
+attgcctgaatctggctttgtgagaaaacgttatttttcattaattaaactccagaatgg
+atttaggctgtatgccgctaccggcggaaagcggttcgtttaacagggcgtgcatggtcg
+cccatgcaatatcggcgtgactggcttcctcggtgcggctggcctcgtaggtggcgctgc
+gcccgctgctggtcatggttttgcggatggacataaacgactgcgtgacgtcggttgctc
+cggcgtcgtactccagacagccgcggcgaatggtgtcttttgccttgagtaccattgcgg
+ttttcatttcaggcgtgtaacggatgccgcgtgcggccgggtagaatgagcgcaccaact
+ggaacacgccgaggccgaggccggttgcgtcaatgccgatgtattcgacgctgtatttct
+cggtcagtttgcggatgccatctgcctgcgcggcaaagtccatgcccttccactggtggc
+gctccagcatgcggaacttgccaccagaaaccaccggcggcgcgagcacgacgcacccgg
+cgctgtcgccagtgtgtgacgggtcgtagccaatccagacggggcgagagccgaacggat
+ggtcggcgaacggggcgaagtcctcccattcttccatcacgtcgaccatgcagcgctgca
+gctcctcgaacgggaataccgacgctttatcgtcgacaaactcgcacataaacaggtttt
+taaagtcctcatcactgttttcgcgtttgagttggtcgaggtcgaacagggtgcagccac
+cggcaagggcgtcctcaatggtgacaatctgccgccactggccatcgtcgcagagctggc
+caccggcgagcgcgcggtgactgatgtcaatttcgatgcggtcggcaatacggctgcgcc
+ccttgttgaacagctcgccagaccagaagggataagcgccgtgcgccagcgttgagggtg
+tcgaaaagtaggttgagcgcagatgcttctgcgaggccatgcccgaggcgactttgcgca
+gcttctgaaaattcgggatccagaatatttcatcgacatacaggtcgccgttatggctct
+gagccgtgttggagttggtaccgagaaaaatcagctttgcgccgttgttgccaatgacaa
+tcgggtcgccggtcaggtcgacgtcaaccagtcgcgcaaactgtatgatgtattcgcgga
+acacgtaagcctgcgttttactggccgacagaaaaatctggttatggccggtcttgagtg
+ctcgcagcagtgcctcacgggaaaaatagaacgtcgcgccaatctggcgggatttgagaa
+tgtcgcgaatacggtgtgccagtcctgcgcggtaccactgcaactggtactcgaaagact
+ggtcgaaaaataattcctccagcttttcgatagcctcgtcgctgaaaaaattctttttcg
+gcttcttgcgctcacccttgttgcggttggcgacgttggggttaaggtcggcctcgttgc
+cggtctggctgtagcggttaacgcgtgccagtcgttcaatctgccgcccgagcaggtcaa
+tctctttgaagtcaccgcctgacttttgcggcttggcgatgagctgaatcaggcgcgcct
+caaggctgctttcaacgcgggaaatcggtgcgatgccatcccagccgtcgcgctgtttcc
+agctctgcacggtcgggcgcttgacctgcagcatttcggcaatctgcggcacggaaaaac
+cctgccagtaaagcagcgatgcctgtcgtcgcgggtcatgcaacaaggttgtatcggtgg
+aaatggtcattgatgcctcgccgtaatggattcagggcaaggctacttaatggccgtcag
+tgattcgctaaggtgctgttgtgtgggcggttgtccagtcgtcattggtggtctggcgtg
+tcctgagtctggaaactggcggtgaccagtaaccccaacctcaggactcctgacaatggc
+aaaaaaagtctcaaaattctttcgaatcggcgtcgagggtgatacctgcgacgggcgcat
+tatcagcgccagtgatattcaggaaatggccgaaacctatgacccgcgtgtttacggttg
+ccgtatcaaccttgaacacctgcgcggcctgttgcccgatggcatattcaagcgttacgg
+cgatgtggtcgagctgaaagccgagaagattgacgacgattctgcgcttaacggcaagtg
+ggcgttgttcgctaaaatcaccccgaccgatgaccttatcgcgatgaataaagccgcgca
+gaaggtctacacctcaatggaaattcagccgaattttgccaataccggcaaatgctacct
+cgtcggccttgctgtcaccgatgacccggcgagcctcggcactgaatatctcgaattctg
+ccgcactgcgaagcacaacccgctgcagcgctttaaagcccaccctgaaaacgtcttttc
+cgccgccacgctggccgaactggaatttgaagacgttcccgacacggtgctcaacagcct
+ggccgataaggtgaaagccattttcagccgtaagcaggtcagcgacgatgcgcgcctgaa
+tgatgtacatgaagcggtgaccgccgtcagcgagcatgtgcagaccaacctcactgcaca
+ggataagcgtctttccgatatggaaaccgcgtttgccaccttcaaacaggaactgaccgg
+caaggttgaagaaaccagccaggcattttccgtcctgaaaaccactctcgacaaaaccga
+aagtttcagccagccgcgacgcacgaaagccagcggcggtggtggcgatgagctgctgac
+tgactgctgataaaccgcagaccgaaaccgggcggaacccccgcccgatgctgtgactaa
+ccgattaaatcaaacaggaaatactatgcgtcaggaaacccgttttaagttcaatgccta
+tctgacccagctcgccaaactgaacggcatcagcgttgatgacgtcagcaaaaaattcac
+cgtcgagccgtccgtcacgcaaacgctgatgaacaccgtgcaggcgtcatccgcgtttct
+gcagatgattaacattctgccggtcgcagaaatgaagggtgagaaaatcggtgtcggtgt
+gaccggcaccatcgccagcacgaccgacacctcgggcgacaaagagcgccagaccgcaga
+ttttaccgcgcttgagtccaacaagtacgagtgcaaccagattaactttgacttccacct
+gacctataaacgcctcgacctgtgggcgcgttttcaggactttcagcgtcgtattcgcga
+cgccattgtccagcgtcaggcactggatttcatcatggccgggtttaacggtaccacccg
+cgctgacacctctgaccgtgttaaaaacccgatgctgcaggatgtggccgttggctggct
+gcagaaataccgcaatgaagccccggcgcgtgtgatgagcaacatcaccgacgctgacgg
+taaagtcgtttcggcagtgattcgcgtcggtaaaaacggcgactatgagaacctcgacgc
+actggtgatggatggtaccaataccctgattgacgagatttatcaggatgacccgaaact
+cgttgccatcgttggccgtaagctgctggccgacaaatattttccgctggtcaacaaaca
+gcaggaaaacaccgagtcgctcgcggcggatatcatcatcagccagaagcgcatcggcaa
+cctgccagccgtacgtgtgccgtacttcccggcgaacgcggtgttcgtgaccacgctgga
+aaacctctctatctatttcatggatgagagccaccgccgcagcattgatgaaaacccgaa
+aaaagaccgcgtggaaaactacgagtcgatgaacatcgactatgtggtcgaggcgtatgc
+cgccgggtgcctgctggaaaacatcaccctgggcgatttcaccgcacctgcagcaccgga
+aggcggagagtaaacccatgacgagccccgcacagcgtcacatgatgcgggtctcggcct
+ctcaagccgcgcagcgggaacaagccccgctgcgccatgcaaccgcctatgagcagatgc
+tggttaagctggccgatgaccgccgcacgttaaaaaacatccgttcaaacgaacgtaaag
+ccgagaaaaagcgcgagctgctgccgttctatgcgccgtgggtcgccggtgtgctgactg
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+gggattacacacaaaggaaaatcatggataccgtaatagcatttttatctctggctctct
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+gctccagtgctgtttatctcggtggctgtctggcgctgggcgttattggctcaatcttat
+ggccgactgaaaaaactcagccggtggcaaaaactgacgtaccggcggttaaagcggaac
+cggctacgccaacgtttgagtacgcagataaaaccctcaaagaatatcgcaacgagccaa
+aagaaacccggcacgaaatcgttaaagactatgttggattcaaaggtgtgcaggccagcg
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+agctcagtgatgtgttggggtggtgtttcaacgacttcgagaaagatccacaatctctga
+ataataaaatcaaccttgacgaatttcagggtaattttagcggttgggatggctcttatc
+gcccgttagagaagctgataaaagccagtatgaatgatgattcctcttataaacatgttt
+caacggtctaccatctgattttgaataaagacccgcatgccgttgtaaaaacaacgtttc
+gcggcactaatgcttatggtggcgtggtcaaacagaccgtagcagcacgcgtcaacgtgc
+gaacgggcgaggtcgattcaatactcgacaattaaacatgacaaacgccgccggtgctga
+aactcgctttcagtgctggcggggttgaacaacgagccccgcgaggcgttagcctacccc
+tgagcaaccgcccaagaccggtactattaaagccggtttttttatgccacttttccacga
+atttcccgtttttttagccgtgcatgcaacaggtgcattgttttgcatgcgtcaggcttg
+cccgttctggttgtgcgtcgccagagctggcgcggctccagagtggtcatgcaactgcat
+taaaaccgacccataaagtgggca
diff --git a/etc/c1215.blastn.crunch b/etc/c1215.blastn.crunch
new file mode 100644
index 000000000..13215ee94
--- /dev/null
+++ b/etc/c1215.blastn.crunch
@@ -0,0 +1,126 @@
+9583 99.00 1474 6490 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1474 6490 SPBC1215 AL096846 S.pombe chromosome II cosmid c1215.
+2712 98.00 1 1437 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 1437 SPBC1215 AL096846 S.pombe chromosome II cosmid c1215.
+276 99.00 429 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 7588 7734 SPAC1142 AL159951 S.pombe chromosome I cosmid c1142.
+274 99.00 429 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 174 319 SPRG5SC K00770 yeast (s.pombe) 5s rrna gene and flanks, clone pspr36.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 48 169 SPRG5S K00569 yeast (s.pombe) 5s rrna gene, clone pym3.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21075 20954 SPCC63 AL049522 S.pombe chromosome III cosmid c63.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 33755 33876 SPCC417 AL035076 S.pombe chromosome III cosmid c417.
+228 99.00 456 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 22579 22697 SPCC417 AL035076 S.pombe chromosome III cosmid c417.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 31087 30966 SPCC338 AL023781 S.pombe chromosome III cosmid c338.
+129 97.00 35 107 big_blast_2_50000_embl_other_c1215.seq.00000001.out 22094 22022 SPCC338 AL023781 S.pombe chromosome III cosmid c338.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 6258 6379 SPBC17A3 AL109652 S.pombe chromosome II cosmid c17A3.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 3214 3335 SPAC5H10 Z49811 S.pombe chromosome I cosmid c5H10.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 8450 8571 SPAC4H3 Z69380 S.pombe chromosome I cosmid c4H3.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 30828 30707 SPAC25B8 AL133225 S.pombe chromosome I cosmid c25B8.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 24568 24447 SPAC1F7 Z67998 S.pombe chromosome I cosmid c1F7.
+242 100.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 17220 17099 SPAB4537 AB004537 Schizosaccharomyces pombe 37 kb genomic DNA, clone c213.
+240 100.00 453 573 big_blast_2_50000_embl_other_c1215.seq.00000001.out 7867 7747 SPAC926 AL110469 S.pombe chromosome I cosmid c926.
+238 100.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 29615 29496 SPCC965 AL023590 S.pombe chromosome III cosmid c965.
+238 100.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 24228 24347 SPCC24B10 AL157991 S.pombe chromosome III cosmid c24B10.
+238 100.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 5316 5435 SPCC10H11 AL162771 S.pombe chromosome III cosmid c10H11.
+238 100.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 23752 23871 SPBC428 AL034382 S.pombe chromosome II cosmid c428.
+238 100.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 15895 16014 SPBC4 AL121863 S.pombe chromosome II cosmid c4.
+238 100.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 9473 9354 SPBC342 AL096809 S.pombe chromosome II cosmid c342.
+238 100.00 456 575 big_blast_2_50000_embl_other_c1215.seq.00000001.out 9665 9546 SPBC21H7 AL023286 S.pombe chromosome II cosmid c21H7.
+238 100.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 24026 24145 SPBC1685 AL031154 S.pombe chromosome II cosmid c1685.
+236 100.00 456 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 202 320 SPRG5SE K00570 yeast (s.pombe) 5s rrna and asp-trna genes, clone pym116.
+236 100.00 456 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 34701 34819 SPBP23A10 AL136535 S.pombe chromosome II p1 p23A10.
+236 100.00 456 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 31520 31638 SPBC577 AL110506 S.pombe chromosome II cosmid c577.
+236 100.00 456 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 6163 6281 SPBC1677 AL035581 S.pombe chromosome II cosmid c1677.
+236 100.00 456 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 18162 18044 SPAC3G9 AL021046 S.pombe chromosome I cosmid c3G9.
+236 100.00 456 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 119 SPA K01049 Yeast (S.pombe) 5S ribosomal RNA.
+234 99.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1664 1543 SPCC188 AL049662 S.pombe chromosome III cosmid c188.
+234 99.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 20839 20718 SPCC11E10 AL121783 S.pombe chromosome III cosmid c11E10.
+234 99.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 23408 23287 SPBC21D10 AL031536 S.pombe chromosome II cosmid c21D10.
+232 99.00 455 575 big_blast_2_50000_embl_other_c1215.seq.00000001.out 3099 3219 SPBC24C6 AL031786 S.pombe chromosome II cosmid c24C6.
+230 99.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 200 319 SPRG5SA K00768 yeast (s.pombe) 5s rrna gene and flanks, clone pspr1.
+230 99.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 24833 24952 SPBC354 AL022071 S.pombe chromosome II cosmid c354.
+230 99.00 455 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 14612 14731 SPAC167 AL035248 S.pombe chromosome I cosmid c167.
+228 99.00 456 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 201 319 SPRG5SD K00771 yeast (s.pombe) 5s rrna gene and flanks, clone pspr41.
+226 98.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 198 319 SPRG5SB K00769 yeast (s.pombe) 5s rrna gene and flanks, clone pspr11.
+226 99.00 455 572 big_blast_2_50000_embl_other_c1215.seq.00000001.out 2544 2661 SPAC24H6 Z54142 S.pombe chromosome I cosmid c24H6.
+226 98.00 453 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 13105 12984 SPAC1B1 Z98532 S.pombe chromosome I cosmid c1B1.
+222 99.00 457 572 big_blast_2_50000_embl_other_c1215.seq.00000001.out 9084 8969 SPAC1687 AL035064 S.pombe chromosome I cosmid c1687.
+220 100.00 454 564 big_blast_2_50000_embl_other_c1215.seq.00000001.out 11460 11350 SPBC14F5 AL023780 S.pombe chromosome II cosmid c14F5.
+206 100.00 6387 6490 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 104 SPBC83 AL035536 S.pombe chromosome II cosmid c83.
+163 100.00 1 82 big_blast_2_50000_embl_other_c1215.seq.00000001.out 82 1 SPAB4534 AB004534 Schizosaccharomyces pombe 38 kb genomic DNA, clone 1750.
+157 100.00 496 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 79 SPBC725 AL034352 S.pombe chromosome II cosmid c725.
+157 100.00 496 574 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 79 SPBC530 AL023634 S.pombe chromosome II cosmid c530.
+103 100.00 455 506 big_blast_2_50000_embl_other_c1215.seq.00000001.out 52 1 SPRHP9 Y09431 S.pombe rhp9 gene
+93 85.00 463 575 big_blast_2_50000_embl_other_c1215.seq.00000001.out 14821 14716 SPBC609 AL035226 S.pombe chromosome II cosmid c609.
+65 89.00 456 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 57 UURNA1 X00998 Urechis unicinctus 5S rRNA sequence
+58 95.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 PGRNA01 X00994 Phascolopsis gouldii 5S rRNA sequence
+58 95.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 904 868 CFRRN285 X06056 Calanus finmarchicus DNA for 23S and 5S rRNA
+56 93.00 477 516 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1113 1074 SPBC1778 AL049489 S.pombe chromosome II cosmid c1778.
+52 100.00 6059 6084 big_blast_2_50000_embl_other_c1215.seq.00000001.out 233479 233504 AE003531 AE003531 Drosophila melanogaster genomic scaffold 142000013386050 section 37 of 54, complete sequence.
+50 92.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 PRRRN5S X01550 Planocera reticulata 5S ribosomal RNA
+50 92.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 EGRN01 X00022 Ribbon worm Emplectonema gracile 5S rRNA (Short)
+50 94.00 480 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 25 57 AMRRN5S X01518 Acyrthosiphon magnoliae (aphid) 5S ribosomal RNA
+50 89.00 461 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 6 58 CR1619 D10528 Candida rugosa 5S rRNA.
+50 88.00 521 569 big_blast_2_50000_embl_other_c1215.seq.00000001.out 66 114 AERRA K03161 Agaricus edulis 5S ribosomal RNA (5S rRNA).
+48 96.00 2466 2493 big_blast_2_50000_embl_other_c1215.seq.00000001.out 10841 10814 AC010292 AC010292 Homo sapiens chromosome 5 clone CTB-131H22, complete sequence.
+46 85.00 458 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 5564 5510 PDHISTCL X53330 P.dumerilii histone gene cluster for core histones H2A, H2B, H3 and H4
+46 100.00 4802 4824 big_blast_2_50000_embl_other_c1215.seq.00000001.out 28075 28053 HSU165H7 Z70225 Human DNA sequence from cosmid U165H7, between markers DXS366 and DXS87 on chromosome X.
+46 88.00 526 568 big_blast_2_50000_embl_other_c1215.seq.00000001.out 72 114 TDRRA M58385 Taphrina deformans 5S ribosomal RNA.
+46 96.00 487 513 big_blast_2_50000_embl_other_c1215.seq.00000001.out 3 29 SPRRAAS M19951 Schizosaccharomyces pombe 5S ribosomal RNA gene, partial sequence.
+44 100.00 4816 4837 big_blast_2_50000_embl_other_c1215.seq.00000001.out 88073 88052 AC084760 AC084760 Gallus gallus clone 65N20, complete sequence.
+44 88.00 57 98 big_blast_2_50000_embl_other_c1215.seq.00000001.out 69197 69238 CHPTTRPG D17510 Pinus thunbergii chloroplast DNA, complete sequence.
+44 88.00 57 98 big_blast_2_50000_embl_other_c1215.seq.00000001.out 48563 48522 CHNTXX Z00044 Nicotiana tabacum chloroplast genome DNA
+44 88.00 57 98 big_blast_2_50000_embl_other_c1215.seq.00000001.out 138 97 CHNTTB2 M16897 Tobacco Thr-tRNA gene.
+44 88.00 57 98 big_blast_2_50000_embl_other_c1215.seq.00000001.out 14879 14920 AP002983 AP002983 Lotus japonicus chloroplast DNA, complete genome.
+44 88.00 57 98 big_blast_2_50000_embl_other_c1215.seq.00000001.out 46263 46222 AP000423 AP000423 Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia.
+44 100.00 893 914 big_blast_2_50000_embl_other_c1215.seq.00000001.out 49861 49882 HSEVMHC X87344 H.sapiens DMA, DMB, HLA-Z1, IPP2, LMP2, TAP1, LMP7, TAP2, DOB, DQB2 and RING8, 9, 13 and 14 genes
+44 100.00 6061 6082 big_blast_2_50000_embl_other_c1215.seq.00000001.out 143317 143296 HS377H14 AL022723 Human DNA sequence from clone 377H14 on chromosome 6p21.32-22.1. Contains the HLA-G gene for major histocompatibility complex, class I, G (HLA 6.0) two MHC class I pseudogenes, an RPL7A (60S Ribosomal Protein L7A) pseudogene, a gene for a novel MHC class 1 protein, an interferon-inducible protein 1-8U pseudogene, an RPL23A (60S Ribosomal Protein L23A) pseudogene, an HCGIX pseudogene, an MICB or PERB11.1 pseudogene,the HLA-F gene for major histocompatibility complex, class I, F (CDA12), and four P5-1 pseudogenes. Contains EST, STSs, GSS and six putative CpG islands.
+44 100.00 1237 1258 big_blast_2_50000_embl_other_c1215.seq.00000001.out 3149 3128 AP001207 AP001207 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1562D12.
+44 100.00 1237 1258 big_blast_2_50000_embl_other_c1215.seq.00000001.out 201930 201909 AP000426 AP000426 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1107E3.
+44 93.00 2454 2483 big_blast_2_50000_embl_other_c1215.seq.00000001.out 75294 75323 AC023426 AC023426 Homo sapiens 12 BAC RP11-396L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
+44 100.00 6061 6082 big_blast_2_50000_embl_other_c1215.seq.00000001.out 34756 34735 AC004213 AC004213 Homo sapiens clone UWGC:y19c060 from 6p21, complete sequence.
+44 86.00 521 570 big_blast_2_50000_embl_other_c1215.seq.00000001.out 364 413 AI5SRRNA2 X99089 A.immersus 5S rRNA gene, b2-type
+42 100.00 1245 1265 big_blast_2_50000_embl_other_c1215.seq.00000001.out 12979 12959 BBU43414 U43414 Borrelia burgdorferi linear plasmid lp16 DNA, complete sequence.
+42 100.00 2454 2474 big_blast_2_50000_embl_other_c1215.seq.00000001.out 278691 278671 AP001119 AP001119 Buchnera sp. APS genomic DNA, complete sequence, segment 2/2.
+42 100.00 1245 1265 big_blast_2_50000_embl_other_c1215.seq.00000001.out 12951 12931 AE000793 AE000793 Borrelia burgdorferi plasmid lp17, complete plasmid sequence.
+42 100.00 818 838 big_blast_2_50000_embl_other_c1215.seq.00000001.out 2471 2451 OSU77637 U77637 Oryza sativa class III ADH enzyme (AdhIII) gene, complete cds.
+42 96.00 1241 1265 big_blast_2_50000_embl_other_c1215.seq.00000001.out 79773 79797 H0505A02 AL512543 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0505A02, complete sequence
+42 93.00 343 371 big_blast_2_50000_embl_other_c1215.seq.00000001.out 29118 29146 AB018121 AB018121 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXE2.
+42 84.00 456 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 57 SSRRAB K02349 Jellyfish (Spirocodon saltatrix) 5S ribosomal RNA.
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 PCRN5SA X13039 Philosamia cynthia ricini 5S rRNA
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 PCRN5S K02354 Philosamia cythia ricini (silkworm) 5S ribosomal RNA.
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 OV5SRRN X06835 Octopus vulgaris 5S rRNA
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 ME5SRNA J01869 Mussel (Mytilus edulis) 5S ribosomal RNA.
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 LGRNO1 X00020 Ribbon worm Lineus geniculatus 5S rRNA
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 HSRRN5S X01535 Hymeniacidon sanguinea 5S ribosomal RNA
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 HJRN01 V00475 Halichondria japonica 5S ribosomal RNA (complete sequence).
+42 84.00 456 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 57 EARRN5S X03911 Enchytraeus albidus 5S rRNA
+42 100.00 6340 6360 big_blast_2_50000_embl_other_c1215.seq.00000001.out 25954 25974 CEK02B12 Z75711 Caenorhabditis elegans cosmid K02B12
+42 100.00 1213 1233 big_blast_2_50000_embl_other_c1215.seq.00000001.out 5436 5456 CEF14B8 U28737 Caenorhabditis elegans cosmid F14B8.
+42 84.00 456 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 57 CED132199 AJ132199 Cerastoderma edule 5S rRNA gene and nontranscribed spacer, clone 4
+42 84.00 456 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 1 57 CED132198 AJ132198 Cerastoderma edule 5S rRNA gene and nontranscribed spacer, clone 3
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 BN5SRRN X06834 Bugula neritina (moss-animal) 5S rRNA
+42 100.00 5756 5776 big_blast_2_50000_embl_other_c1215.seq.00000001.out 2219 2239 BMU86876 U86876 Bombyx mori chitinase-like protein mRNA, complete cds.
+42 89.00 476 512 big_blast_2_50000_embl_other_c1215.seq.00000001.out 21 57 APRN5SA X13035 Antheraea pernyi 5S rRNA
+42 100.00 5756 5776 big_blast_2_50000_embl_other_c1215.seq.00000001.out 2256 2276 AF326596 AF326596 Bombyx mandarina chitinase mRNA, complete cds.
+42 100.00 136 156 big_blast_2_50000_embl_other_c1215.seq.00000001.out 6370 6350 AC084626 AC084626 Caenorhabditis briggsae cosmid G45C20, complete sequence.
+42 100.00 6091 6111 big_blast_2_50000_embl_other_c1215.seq.00000001.out 27211 27231 AC006830 AC006830 Caenorhabditis elegans cosmid ZK105, complete sequence.
+42 100.00 5756 5776 big_blast_2_50000_embl_other_c1215.seq.00000001.out 2225 2245 AB052914 AB052914 Bombyx mori chiB mRNA for chitinase precursor, complete cds.
+42 100.00 1395 1415 big_blast_2_50000_embl_other_c1215.seq.00000001.out 145576 145596 HSMX1A AL442166 Homo sapiens chromosome 21 from 5 PACs and 5 Cosmids map 21q22.2,D21S349-MX1; segment 1/2
+42 100.00 6065 6085 big_blast_2_50000_embl_other_c1215.seq.00000001.out 70745 70765 HS994L9 AL034554 Human DNA sequence from clone 994L9 on chromosome 20p12.3-13 Contains STS and GSSs.
+42 100.00 1395 1415 big_blast_2_50000_embl_other_c1215.seq.00000001.out 173941 173961 HS21C084 AL163284 Homo sapiens chromosome 21 segment HS21C084.
+42 100.00 5172 5192 big_blast_2_50000_embl_other_c1215.seq.00000001.out 8899 8879 HS21C013 AL163213 Homo sapiens chromosome 21 segment HS21C013.
+42 96.00 3691 3715 big_blast_2_50000_embl_other_c1215.seq.00000001.out 222756 222780 AP001732 AP001732 Homo sapiens genomic DNA, chromosome 21q, section 76/105.
+42 96.00 334 358 big_blast_2_50000_embl_other_c1215.seq.00000001.out 234259 234235 AP001677 AP001677 Homo sapiens genomic DNA, chromosome 21q, section 21/105.
+42 96.00 3691 3715 big_blast_2_50000_embl_other_c1215.seq.00000001.out 97170 97194 AP001038 AP001038 Homo sapiens genomic DNA, chromosome 21, clone:P178O22, ERG-ETS2 region.
+42 96.00 334 358 big_blast_2_50000_embl_other_c1215.seq.00000001.out 117565 117541 AP000946 AP000946 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B335N5, LL56-APP region.
+42 100.00 6106 6126 big_blast_2_50000_embl_other_c1215.seq.00000001.out 179419 179439 AP000810 AP000810 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-765H23.
+42 100.00 5172 5192 big_blast_2_50000_embl_other_c1215.seq.00000001.out 94404 94384 AP000473 AP000473 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B291N6, LL56-APP region.
+42 96.00 1801 1825 big_blast_2_50000_embl_other_c1215.seq.00000001.out 6090 6114 AL355365 AL355365 Human DNA sequence from clone RP11-361F15 on chromosome 6
+42 96.00 5531 5555 big_blast_2_50000_embl_other_c1215.seq.00000001.out 79645 79669 AL354861 AL354861 Human DNA sequence from clone RP11-180I4 on chromosome 9
+42 100.00 1 21 big_blast_2_50000_embl_other_c1215.seq.00000001.out 28666 28686 AL139378 AL139378 Human DNA sequence from clone RP11-271B5 on chromosome 13 Contains a gene for a protein similar to ribosomal protein S7, the FGF9 (fibroblast growth factor 9 (glia-activating factor)) gene, ESTs, STSs, GSSs and CpG islands.
+42 100.00 5783 5803 big_blast_2_50000_embl_other_c1215.seq.00000001.out 15259 15279 AL139163 AL139163 Human DNA sequence from clone RP11-523O15 on chromosome 20 Contains GSSs and STSs.
+42 100.00 3803 3823 big_blast_2_50000_embl_other_c1215.seq.00000001.out 20782 20802 AL136301 AL136301 Human DNA sequence from clone RP11-195L15 on chromosome 13
+42 91.00 5752 5784 big_blast_2_50000_embl_other_c1215.seq.00000001.out 74511 74543 AL133462 AL133462 Human DNA sequence from clone RP11-108A16 on chromosome 20 Contains ESTs, STSs and GSSs.
+42 96.00 334 358 big_blast_2_50000_embl_other_c1215.seq.00000001.out 119422 119446 AF238375 AF238375 Homo sapiens chromosome 21 clone BAC 49B5 map 21q21, complete sequence.
+42 100.00 1242 1262 big_blast_2_50000_embl_other_c1215.seq.00000001.out 42069 42089 AF130342 AF130342 Homo sapiens chromosome 8 clone PAC 87.1 map 8q24.1, complete sequence.
+42 91.00 5752 5784 big_blast_2_50000_embl_other_c1215.seq.00000001.out 49339 49371 AC012380 AC012380 Genomic Sequence For Homo sapiens Clone 125H5, Chromosome 20, complete sequence.
+42 93.00 1230 1258 big_blast_2_50000_embl_other_c1215.seq.00000001.out 135503 135475 AC007392 AC007392 Homo sapiens BAC clone RP11-444B4 from 2, complete sequence.
+42 100.00 1414 1434 big_blast_2_50000_embl_other_c1215.seq.00000001.out 4290 4310 PCAROMX L18918 Pneumocystis carinii pentafunctional enzyme (arom) gene, complete cds.
+42 87.00 521 565 big_blast_2_50000_embl_other_c1215.seq.00000001.out 66 110 CH1457 D10531 Cryptococcus humicolus 5S rRNA.
diff --git a/etc/c1215.blastn.tab b/etc/c1215.blastn.tab
new file mode 100644
index 000000000..e2113c439
--- /dev/null
+++ b/etc/c1215.blastn.tab
@@ -0,0 +1,630 @@
+FT BLASTN_HIT 1474..6490
+FT /note="match to SPBC1215 1474..6490 blast score 9583 percent identity 99 AL096846 S.pombe chromosome II cosmid c1215."
+FT /label=SPBC1215
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 1..1437
+FT /note="match to SPBC1215 1..1437 blast score 2712 percent identity 98 AL096846 S.pombe chromosome II cosmid c1215."
+FT /label=SPBC1215
+FT /score=98
+FT /colour=255 5 5
+FT BLASTN_HIT 429..574
+FT /note="match to SPAC1142 7588..7734 blast score 276 percent identity 99 AL159951 S.pombe chromosome I cosmid c1142."
+FT /label=SPAC1142
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 429..574
+FT /note="match to SPRG5SC 174..319 blast score 274 percent identity 99 K00770 yeast (s.pombe) 5s rrna gene and flanks, clone pspr36."
+FT /label=SPRG5SC
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 453..574
+FT /note="match to SPRG5S 48..169 blast score 242 percent identity 100 K00569 yeast (s.pombe) 5s rrna gene, clone pym3."
+FT /label=SPRG5S
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..574
+FT /note="match to SPCC63 20954..21075 blast score 242 percent identity 100 AL049522 S.pombe chromosome III cosmid c63."
+FT /label=SPCC63
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..574
+FT /note="match to SPCC417 33755..33876 blast score 242 percent identity 100 AL035076 S.pombe chromosome III cosmid c417."
+FT /label=SPCC417
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..574
+FT /note="match to SPCC417 22579..22697 blast score 228 percent identity 99 AL035076 S.pombe chromosome III cosmid c417."
+FT /label=SPCC417
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 453..574
+FT /note="match to SPCC338 30966..31087 blast score 242 percent identity 100 AL023781 S.pombe chromosome III cosmid c338."
+FT /label=SPCC338
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 35..107
+FT /note="match to SPCC338 22022..22094 blast score 129 percent identity 97 AL023781 S.pombe chromosome III cosmid c338."
+FT /label=SPCC338
+FT /score=97
+FT /colour=255 7 7
+FT BLASTN_HIT 453..574
+FT /note="match to SPBC17A3 6258..6379 blast score 242 percent identity 100 AL109652 S.pombe chromosome II cosmid c17A3."
+FT /label=SPBC17A3
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..574
+FT /note="match to SPAC5H10 3214..3335 blast score 242 percent identity 100 Z49811 S.pombe chromosome I cosmid c5H10."
+FT /label=SPAC5H10
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..574
+FT /note="match to SPAC4H3 8450..8571 blast score 242 percent identity 100 Z69380 S.pombe chromosome I cosmid c4H3."
+FT /label=SPAC4H3
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..574
+FT /note="match to SPAC25B8 30707..30828 blast score 242 percent identity 100 AL133225 S.pombe chromosome I cosmid c25B8."
+FT /label=SPAC25B8
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..574
+FT /note="match to SPAC1F7 24447..24568 blast score 242 percent identity 100 Z67998 S.pombe chromosome I cosmid c1F7."
+FT /label=SPAC1F7
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..574
+FT /note="match to SPAB4537 17099..17220 blast score 242 percent identity 100 AB004537 Schizosaccharomyces pombe 37 kb genomic DNA, clone c213."
+FT /label=SPAB4537
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..573
+FT /note="match to SPAC926 7747..7867 blast score 240 percent identity 100 AL110469 S.pombe chromosome I cosmid c926."
+FT /label=SPAC926
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 455..574
+FT /note="match to SPCC965 29496..29615 blast score 238 percent identity 100 AL023590 S.pombe chromosome III cosmid c965."
+FT /label=SPCC965
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 455..574
+FT /note="match to SPCC24B10 24228..24347 blast score 238 percent identity 100 AL157991 S.pombe chromosome III cosmid c24B10."
+FT /label=SPCC24B10
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 455..574
+FT /note="match to SPCC10H11 5316..5435 blast score 238 percent identity 100 AL162771 S.pombe chromosome III cosmid c10H11."
+FT /label=SPCC10H11
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 455..574
+FT /note="match to SPBC428 23752..23871 blast score 238 percent identity 100 AL034382 S.pombe chromosome II cosmid c428."
+FT /label=SPBC428
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 455..574
+FT /note="match to SPBC4 15895..16014 blast score 238 percent identity 100 AL121863 S.pombe chromosome II cosmid c4."
+FT /label=SPBC4
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 455..574
+FT /note="match to SPBC342 9354..9473 blast score 238 percent identity 100 AL096809 S.pombe chromosome II cosmid c342."
+FT /label=SPBC342
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..575
+FT /note="match to SPBC21H7 9546..9665 blast score 238 percent identity 100 AL023286 S.pombe chromosome II cosmid c21H7."
+FT /label=SPBC21H7
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 455..574
+FT /note="match to SPBC1685 24026..24145 blast score 238 percent identity 100 AL031154 S.pombe chromosome II cosmid c1685."
+FT /label=SPBC1685
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..574
+FT /note="match to SPRG5SE 202..320 blast score 236 percent identity 100 K00570 yeast (s.pombe) 5s rrna and asp-trna genes, clone pym116."
+FT /label=SPRG5SE
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..574
+FT /note="match to SPBP23A10 34701..34819 blast score 236 percent identity 100 AL136535 S.pombe chromosome II p1 p23A10."
+FT /label=SPBP23A10
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..574
+FT /note="match to SPBC577 31520..31638 blast score 236 percent identity 100 AL110506 S.pombe chromosome II cosmid c577."
+FT /label=SPBC577
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..574
+FT /note="match to SPBC1677 6163..6281 blast score 236 percent identity 100 AL035581 S.pombe chromosome II cosmid c1677."
+FT /label=SPBC1677
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..574
+FT /note="match to SPAC3G9 18044..18162 blast score 236 percent identity 100 AL021046 S.pombe chromosome I cosmid c3G9."
+FT /label=SPAC3G9
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..574
+FT /note="match to SPA 1..119 blast score 236 percent identity 100 K01049 Yeast (S.pombe) 5S ribosomal RNA."
+FT /label=SPA
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 453..574
+FT /note="match to SPCC188 1543..1664 blast score 234 percent identity 99 AL049662 S.pombe chromosome III cosmid c188."
+FT /label=SPCC188
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 453..574
+FT /note="match to SPCC11E10 20718..20839 blast score 234 percent identity 99 AL121783 S.pombe chromosome III cosmid c11E10."
+FT /label=SPCC11E10
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 453..574
+FT /note="match to SPBC21D10 23287..23408 blast score 234 percent identity 99 AL031536 S.pombe chromosome II cosmid c21D10."
+FT /label=SPBC21D10
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 455..575
+FT /note="match to SPBC24C6 3099..3219 blast score 232 percent identity 99 AL031786 S.pombe chromosome II cosmid c24C6."
+FT /label=SPBC24C6
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 455..574
+FT /note="match to SPRG5SA 200..319 blast score 230 percent identity 99 K00768 yeast (s.pombe) 5s rrna gene and flanks, clone pspr1."
+FT /label=SPRG5SA
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 455..574
+FT /note="match to SPBC354 24833..24952 blast score 230 percent identity 99 AL022071 S.pombe chromosome II cosmid c354."
+FT /label=SPBC354
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 455..574
+FT /note="match to SPAC167 14612..14731 blast score 230 percent identity 99 AL035248 S.pombe chromosome I cosmid c167."
+FT /label=SPAC167
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 456..574
+FT /note="match to SPRG5SD 201..319 blast score 228 percent identity 99 K00771 yeast (s.pombe) 5s rrna gene and flanks, clone pspr41."
+FT /label=SPRG5SD
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 453..574
+FT /note="match to SPRG5SB 198..319 blast score 226 percent identity 98 K00769 yeast (s.pombe) 5s rrna gene and flanks, clone pspr11."
+FT /label=SPRG5SB
+FT /score=98
+FT /colour=255 5 5
+FT BLASTN_HIT 455..572
+FT /note="match to SPAC24H6 2544..2661 blast score 226 percent identity 99 Z54142 S.pombe chromosome I cosmid c24H6."
+FT /label=SPAC24H6
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 453..574
+FT /note="match to SPAC1B1 12984..13105 blast score 226 percent identity 98 Z98532 S.pombe chromosome I cosmid c1B1."
+FT /label=SPAC1B1
+FT /score=98
+FT /colour=255 5 5
+FT BLASTN_HIT 457..572
+FT /note="match to SPAC1687 8969..9084 blast score 222 percent identity 99 AL035064 S.pombe chromosome I cosmid c1687."
+FT /label=SPAC1687
+FT /score=99
+FT /colour=255 2 2
+FT BLASTN_HIT 454..564
+FT /note="match to SPBC14F5 11350..11460 blast score 220 percent identity 100 AL023780 S.pombe chromosome II cosmid c14F5."
+FT /label=SPBC14F5
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 6387..6490
+FT /note="match to SPBC83 1..104 blast score 206 percent identity 100 AL035536 S.pombe chromosome II cosmid c83."
+FT /label=SPBC83
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1..82
+FT /note="match to SPAB4534 1..82 blast score 163 percent identity 100 AB004534 Schizosaccharomyces pombe 38 kb genomic DNA, clone 1750."
+FT /label=SPAB4534
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 496..574
+FT /note="match to SPBC725 1..79 blast score 157 percent identity 100 AL034352 S.pombe chromosome II cosmid c725."
+FT /label=SPBC725
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 496..574
+FT /note="match to SPBC530 1..79 blast score 157 percent identity 100 AL023634 S.pombe chromosome II cosmid c530."
+FT /label=SPBC530
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 455..506
+FT /note="match to SPRHP9 1..52 blast score 103 percent identity 100 Y09431 S.pombe rhp9 gene"
+FT /label=SPRHP9
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 463..575
+FT /note="match to SPBC609 14716..14821 blast score 93.7 percent identity 85 AL035226 S.pombe chromosome II cosmid c609."
+FT /label=SPBC609
+FT /score=85
+FT /colour=255 38 38
+FT BLASTN_HIT 456..512
+FT /note="match to UURNA1 1..57 blast score 65.9 percent identity 89 X00998 Urechis unicinctus 5S rRNA sequence"
+FT /label=UURNA1
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 476..512
+FT /note="match to PGRNA01 21..57 blast score 58.0 percent identity 95 X00994 Phascolopsis gouldii 5S rRNA sequence"
+FT /label=PGRNA01
+FT /score=95
+FT /colour=255 12 12
+FT BLASTN_HIT 476..512
+FT /note="match to CFRRN285 868..904 blast score 58.0 percent identity 95 X06056 Calanus finmarchicus DNA for 23S and 5S rRNA"
+FT /label=CFRRN285
+FT /score=95
+FT /colour=255 12 12
+FT BLASTN_HIT 477..516
+FT /note="match to SPBC1778 1074..1113 blast score 56.0 percent identity 93 AL049489 S.pombe chromosome II cosmid c1778."
+FT /label=SPBC1778
+FT /score=93
+FT /colour=255 17 17
+FT BLASTN_HIT 6059..6084
+FT /note="match to AE003531 233479..233504 blast score 52.0 percent identity 100 AE003531 Drosophila melanogaster genomic scaffold 142000013386050 section 37 of 54, complete sequence."
+FT /label=AE003531
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 476..512
+FT /note="match to PRRRN5S 21..57 blast score 50.1 percent identity 92 X01550 Planocera reticulata 5S ribosomal RNA"
+FT /label=PRRRN5S
+FT /score=92
+FT /colour=255 20 20
+FT BLASTN_HIT 476..512
+FT /note="match to EGRN01 21..57 blast score 50.1 percent identity 92 X00022 Ribbon worm Emplectonema gracile 5S rRNA (Short)"
+FT /label=EGRN01
+FT /score=92
+FT /colour=255 20 20
+FT BLASTN_HIT 480..512
+FT /note="match to AMRRN5S 25..57 blast score 50.1 percent identity 94 X01518 Acyrthosiphon magnoliae (aphid) 5S ribosomal RNA"
+FT /label=AMRRN5S
+FT /score=94
+FT /colour=255 15 15
+FT BLASTN_HIT 461..512
+FT /note="match to CR1619 6..58 blast score 50.1 percent identity 89 D10528 Candida rugosa 5S rRNA."
+FT /label=CR1619
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 521..569
+FT /note="match to AERRA 66..114 blast score 50.1 percent identity 88 K03161 Agaricus edulis 5S ribosomal RNA (5S rRNA)."
+FT /label=AERRA
+FT /score=88
+FT /colour=255 30 30
+FT BLASTN_HIT 2466..2493
+FT /note="match to AC010292 10814..10841 blast score 48.1 percent identity 96 AC010292 Homo sapiens chromosome 5 clone CTB-131H22, complete sequence."
+FT /label=AC010292
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 458..512
+FT /note="match to PDHISTCL 5510..5564 blast score 46.1 percent identity 85 X53330 P.dumerilii histone gene cluster for core histones H2A, H2B, H3 and H4"
+FT /label=PDHISTCL
+FT /score=85
+FT /colour=255 38 38
+FT BLASTN_HIT 4802..4824
+FT /note="match to HSU165H7 28053..28075 blast score 46.1 percent identity 100 Z70225 Human DNA sequence from cosmid U165H7, between markers DXS366 and DXS87 on chromosome X."
+FT /label=HSU165H7
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 526..568
+FT /note="match to TDRRA 72..114 blast score 46.1 percent identity 88 M58385 Taphrina deformans 5S ribosomal RNA."
+FT /label=TDRRA
+FT /score=88
+FT /colour=255 30 30
+FT BLASTN_HIT 487..513
+FT /note="match to SPRRAAS 3..29 blast score 46.1 percent identity 96 M19951 Schizosaccharomyces pombe 5S ribosomal RNA gene, partial sequence."
+FT /label=SPRRAAS
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 4816..4837
+FT /note="match to AC084760 88052..88073 blast score 44.1 percent identity 100 AC084760 Gallus gallus clone 65N20, complete sequence."
+FT /label=AC084760
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 57..98
+FT /note="match to CHPTTRPG 69197..69238 blast score 44.1 percent identity 88 D17510 Pinus thunbergii chloroplast DNA, complete sequence."
+FT /label=CHPTTRPG
+FT /score=88
+FT /colour=255 30 30
+FT BLASTN_HIT 57..98
+FT /note="match to CHNTXX 48522..48563 blast score 44.1 percent identity 88 Z00044 Nicotiana tabacum chloroplast genome DNA"
+FT /label=CHNTXX
+FT /score=88
+FT /colour=255 30 30
+FT BLASTN_HIT 57..98
+FT /note="match to CHNTTB2 97..138 blast score 44.1 percent identity 88 M16897 Tobacco Thr-tRNA gene."
+FT /label=CHNTTB2
+FT /score=88
+FT /colour=255 30 30
+FT BLASTN_HIT 57..98
+FT /note="match to AP002983 14879..14920 blast score 44.1 percent identity 88 AP002983 Lotus japonicus chloroplast DNA, complete genome."
+FT /label=AP002983
+FT /score=88
+FT /colour=255 30 30
+FT BLASTN_HIT 57..98
+FT /note="match to AP000423 46222..46263 blast score 44.1 percent identity 88 AP000423 Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia."
+FT /label=AP000423
+FT /score=88
+FT /colour=255 30 30
+FT BLASTN_HIT 893..914
+FT /note="match to HSEVMHC 49861..49882 blast score 44.1 percent identity 100 X87344 H.sapiens DMA, DMB, HLA-Z1, IPP2, LMP2, TAP1, LMP7, TAP2, DOB, DQB2 and RING8, 9, 13 and 14 genes"
+FT /label=HSEVMHC
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 6061..6082
+FT /note="match to HS377H14 143296..143317 blast score 44.1 percent identity 100 AL022723 Human DNA sequence from clone 377H14 on chromosome 6p21.32-22.1. Contains the HLA-G gene for major histocompatibility complex, class I, G (HLA 6.0) two MHC class I pseudogenes, an RPL7A (60S Ribosomal Protein L7A) pseudogene, a gene for a novel MHC class 1 protein, an interferon-inducible protein 1-8U pseudogene, an RPL23A (60S Ribosomal Protein L23A) pseudogene, an HCGIX pseudogene, an MICB or PERB11.1 pseudogene,the HLA-F gene for major histocompatibility complex, class I, F (CDA12), and four P5-1 pseudogenes. Contains EST, STSs, GSS and six putative CpG islands."
+FT /label=HS377H14
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1237..1258
+FT /note="match to AP001207 3128..3149 blast score 44.1 percent identity 100 AP001207 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1562D12."
+FT /label=AP001207
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1237..1258
+FT /note="match to AP000426 201909..201930 blast score 44.1 percent identity 100 AP000426 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1107E3."
+FT /label=AP000426
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 2454..2483
+FT /note="match to AC023426 75294..75323 blast score 44.1 percent identity 93 AC023426 Homo sapiens 12 BAC RP11-396L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence."
+FT /label=AC023426
+FT /score=93
+FT /colour=255 17 17
+FT BLASTN_HIT 6061..6082
+FT /note="match to AC004213 34735..34756 blast score 44.1 percent identity 100 AC004213 Homo sapiens clone UWGC:y19c060 from 6p21, complete sequence."
+FT /label=AC004213
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 521..570
+FT /note="match to AI5SRRNA2 364..413 blast score 44.1 percent identity 86 X99089 A.immersus 5S rRNA gene, b2-type"
+FT /label=AI5SRRNA2
+FT /score=86
+FT /colour=255 35 35
+FT BLASTN_HIT 1245..1265
+FT /note="match to BBU43414 12959..12979 blast score 42.1 percent identity 100 U43414 Borrelia burgdorferi linear plasmid lp16 DNA, complete sequence."
+FT /label=BBU43414
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 2454..2474
+FT /note="match to AP001119 278671..278691 blast score 42.1 percent identity 100 AP001119 Buchnera sp. APS genomic DNA, complete sequence, segment 2/2."
+FT /label=AP001119
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1245..1265
+FT /note="match to AE000793 12931..12951 blast score 42.1 percent identity 100 AE000793 Borrelia burgdorferi plasmid lp17, complete plasmid sequence."
+FT /label=AE000793
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 818..838
+FT /note="match to OSU77637 2451..2471 blast score 42.1 percent identity 100 U77637 Oryza sativa class III ADH enzyme (AdhIII) gene, complete cds."
+FT /label=OSU77637
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1241..1265
+FT /note="match to H0505A02 79773..79797 blast score 42.1 percent identity 96 AL512543 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0505A02, complete sequence"
+FT /label=H0505A02
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 343..371
+FT /note="match to AB018121 29118..29146 blast score 42.1 percent identity 93 AB018121 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXE2."
+FT /label=AB018121
+FT /score=93
+FT /colour=255 17 17
+FT BLASTN_HIT 456..512
+FT /note="match to SSRRAB 1..57 blast score 42.1 percent identity 84 K02349 Jellyfish (Spirocodon saltatrix) 5S ribosomal RNA."
+FT /label=SSRRAB
+FT /score=84
+FT /colour=255 40 40
+FT BLASTN_HIT 476..512
+FT /note="match to PCRN5SA 21..57 blast score 42.1 percent identity 89 X13039 Philosamia cynthia ricini 5S rRNA"
+FT /label=PCRN5SA
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 476..512
+FT /note="match to PCRN5S 21..57 blast score 42.1 percent identity 89 K02354 Philosamia cythia ricini (silkworm) 5S ribosomal RNA."
+FT /label=PCRN5S
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 476..512
+FT /note="match to OV5SRRN 21..57 blast score 42.1 percent identity 89 X06835 Octopus vulgaris 5S rRNA"
+FT /label=OV5SRRN
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 476..512
+FT /note="match to ME5SRNA 21..57 blast score 42.1 percent identity 89 J01869 Mussel (Mytilus edulis) 5S ribosomal RNA."
+FT /label=ME5SRNA
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 476..512
+FT /note="match to LGRNO1 21..57 blast score 42.1 percent identity 89 X00020 Ribbon worm Lineus geniculatus 5S rRNA"
+FT /label=LGRNO1
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 476..512
+FT /note="match to HSRRN5S 21..57 blast score 42.1 percent identity 89 X01535 Hymeniacidon sanguinea 5S ribosomal RNA"
+FT /label=HSRRN5S
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 476..512
+FT /note="match to HJRN01 21..57 blast score 42.1 percent identity 89 V00475 Halichondria japonica 5S ribosomal RNA (complete sequence)."
+FT /label=HJRN01
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 456..512
+FT /note="match to EARRN5S 1..57 blast score 42.1 percent identity 84 X03911 Enchytraeus albidus 5S rRNA"
+FT /label=EARRN5S
+FT /score=84
+FT /colour=255 40 40
+FT BLASTN_HIT 6340..6360
+FT /note="match to CEK02B12 25954..25974 blast score 42.1 percent identity 100 Z75711 Caenorhabditis elegans cosmid K02B12"
+FT /label=CEK02B12
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1213..1233
+FT /note="match to CEF14B8 5436..5456 blast score 42.1 percent identity 100 U28737 Caenorhabditis elegans cosmid F14B8."
+FT /label=CEF14B8
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 456..512
+FT /note="match to CED132199 1..57 blast score 42.1 percent identity 84 AJ132199 Cerastoderma edule 5S rRNA gene and nontranscribed spacer, clone 4"
+FT /label=CED132199
+FT /score=84
+FT /colour=255 40 40
+FT BLASTN_HIT 456..512
+FT /note="match to CED132198 1..57 blast score 42.1 percent identity 84 AJ132198 Cerastoderma edule 5S rRNA gene and nontranscribed spacer, clone 3"
+FT /label=CED132198
+FT /score=84
+FT /colour=255 40 40
+FT BLASTN_HIT 476..512
+FT /note="match to BN5SRRN 21..57 blast score 42.1 percent identity 89 X06834 Bugula neritina (moss-animal) 5S rRNA"
+FT /label=BN5SRRN
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 5756..5776
+FT /note="match to BMU86876 2219..2239 blast score 42.1 percent identity 100 U86876 Bombyx mori chitinase-like protein mRNA, complete cds."
+FT /label=BMU86876
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 476..512
+FT /note="match to APRN5SA 21..57 blast score 42.1 percent identity 89 X13035 Antheraea pernyi 5S rRNA"
+FT /label=APRN5SA
+FT /score=89
+FT /colour=255 28 28
+FT BLASTN_HIT 5756..5776
+FT /note="match to AF326596 2256..2276 blast score 42.1 percent identity 100 AF326596 Bombyx mandarina chitinase mRNA, complete cds."
+FT /label=AF326596
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 136..156
+FT /note="match to AC084626 6350..6370 blast score 42.1 percent identity 100 AC084626 Caenorhabditis briggsae cosmid G45C20, complete sequence."
+FT /label=AC084626
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 6091..6111
+FT /note="match to AC006830 27211..27231 blast score 42.1 percent identity 100 AC006830 Caenorhabditis elegans cosmid ZK105, complete sequence."
+FT /label=AC006830
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 5756..5776
+FT /note="match to AB052914 2225..2245 blast score 42.1 percent identity 100 AB052914 Bombyx mori chiB mRNA for chitinase precursor, complete cds."
+FT /label=AB052914
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1395..1415
+FT /note="match to HSMX1A 145576..145596 blast score 42.1 percent identity 100 AL442166 Homo sapiens chromosome 21 from 5 PACs and 5 Cosmids map 21q22.2,D21S349-MX1; segment 1/2"
+FT /label=HSMX1A
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 6065..6085
+FT /note="match to HS994L9 70745..70765 blast score 42.1 percent identity 100 AL034554 Human DNA sequence from clone 994L9 on chromosome 20p12.3-13 Contains STS and GSSs."
+FT /label=HS994L9
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1395..1415
+FT /note="match to HS21C084 173941..173961 blast score 42.1 percent identity 100 AL163284 Homo sapiens chromosome 21 segment HS21C084."
+FT /label=HS21C084
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 5172..5192
+FT /note="match to HS21C013 8879..8899 blast score 42.1 percent identity 100 AL163213 Homo sapiens chromosome 21 segment HS21C013."
+FT /label=HS21C013
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 3691..3715
+FT /note="match to AP001732 222756..222780 blast score 42.1 percent identity 96 AP001732 Homo sapiens genomic DNA, chromosome 21q, section 76/105."
+FT /label=AP001732
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 334..358
+FT /note="match to AP001677 234235..234259 blast score 42.1 percent identity 96 AP001677 Homo sapiens genomic DNA, chromosome 21q, section 21/105."
+FT /label=AP001677
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 3691..3715
+FT /note="match to AP001038 97170..97194 blast score 42.1 percent identity 96 AP001038 Homo sapiens genomic DNA, chromosome 21, clone:P178O22, ERG-ETS2 region."
+FT /label=AP001038
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 334..358
+FT /note="match to AP000946 117541..117565 blast score 42.1 percent identity 96 AP000946 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B335N5, LL56-APP region."
+FT /label=AP000946
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 6106..6126
+FT /note="match to AP000810 179419..179439 blast score 42.1 percent identity 100 AP000810 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-765H23."
+FT /label=AP000810
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 5172..5192
+FT /note="match to AP000473 94384..94404 blast score 42.1 percent identity 100 AP000473 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B291N6, LL56-APP region."
+FT /label=AP000473
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 1801..1825
+FT /note="match to AL355365 6090..6114 blast score 42.1 percent identity 96 AL355365 Human DNA sequence from clone RP11-361F15 on chromosome 6"
+FT /label=AL355365
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 5531..5555
+FT /note="match to AL354861 79645..79669 blast score 42.1 percent identity 96 AL354861 Human DNA sequence from clone RP11-180I4 on chromosome 9"
+FT /label=AL354861
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 1..21
+FT /note="match to AL139378 28666..28686 blast score 42.1 percent identity 100 AL139378 Human DNA sequence from clone RP11-271B5 on chromosome 13 Contains a gene for a protein similar to ribosomal protein S7, the FGF9 (fibroblast growth factor 9 (glia-activating factor)) gene, ESTs, STSs, GSSs and CpG islands."
+FT /label=AL139378
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 5783..5803
+FT /note="match to AL139163 15259..15279 blast score 42.1 percent identity 100 AL139163 Human DNA sequence from clone RP11-523O15 on chromosome 20 Contains GSSs and STSs."
+FT /label=AL139163
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 3803..3823
+FT /note="match to AL136301 20782..20802 blast score 42.1 percent identity 100 AL136301 Human DNA sequence from clone RP11-195L15 on chromosome 13"
+FT /label=AL136301
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 5752..5784
+FT /note="match to AL133462 74511..74543 blast score 42.1 percent identity 91 AL133462 Human DNA sequence from clone RP11-108A16 on chromosome 20 Contains ESTs, STSs and GSSs."
+FT /label=AL133462
+FT /score=91
+FT /colour=255 22 22
+FT BLASTN_HIT 334..358
+FT /note="match to AF238375 119422..119446 blast score 42.1 percent identity 96 AF238375 Homo sapiens chromosome 21 clone BAC 49B5 map 21q21, complete sequence."
+FT /label=AF238375
+FT /score=96
+FT /colour=255 10 10
+FT BLASTN_HIT 1242..1262
+FT /note="match to AF130342 42069..42089 blast score 42.1 percent identity 100 AF130342 Homo sapiens chromosome 8 clone PAC 87.1 map 8q24.1, complete sequence."
+FT /label=AF130342
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 5752..5784
+FT /note="match to AC012380 49339..49371 blast score 42.1 percent identity 91 AC012380 Genomic Sequence For Homo sapiens Clone 125H5, Chromosome 20, complete sequence."
+FT /label=AC012380
+FT /score=91
+FT /colour=255 22 22
+FT BLASTN_HIT 1230..1258
+FT /note="match to AC007392 135475..135503 blast score 42.1 percent identity 93 AC007392 Homo sapiens BAC clone RP11-444B4 from 2, complete sequence."
+FT /label=AC007392
+FT /score=93
+FT /colour=255 17 17
+FT BLASTN_HIT 1414..1434
+FT /note="match to PCAROMX 4290..4310 blast score 42.1 percent identity 100 L18918 Pneumocystis carinii pentafunctional enzyme (arom) gene, complete cds."
+FT /label=PCAROMX
+FT /score=100
+FT /colour=255 0 0
+FT BLASTN_HIT 521..565
+FT /note="match to CH1457 66..110 blast score 42.1 percent identity 87 D10531 Cryptococcus humicolus 5S rRNA."
+FT /label=CH1457
+FT /score=87
+FT /colour=255 33 33
diff --git a/etc/c1215.embl b/etc/c1215.embl
new file mode 100644
index 000000000..5acb69e99
--- /dev/null
+++ b/etc/c1215.embl
@@ -0,0 +1,258 @@
+ID SPBC1215 standard; DNA; FUN; 6490 BP.
+XX
+AC AL096846;
+XX
+DE S.pombe chromosome II cosmid c1215.
+XX
+KW SURF-family protein; COX complex biogenesis; DEC1 homologue;
+KW mitochondrial inheritance; actin cytoskeleton organisation.
+XX
+OS Schizosaccharomyces pombe (yeast)
+OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes;
+OC Endomycetales; Saccharomycetaceae.
+XX
+RN [1]
+RP 1-6490
+RA Lyne M.H., Rajandream M.A., Barrell B.G., Seeger K., Quail M., Harris D.;
+RT ;
+RL Submitted (16-JUL-1999) to the EMBL/GenBank/DDBJ databases.
+RL European Schizosaccharomyces genome sequencing project,
+RL Sanger Centre, The Wellcome Trust Genome Campus, Hinxton,
+RL Cambridge CB10 1SA, E-mail: barrell@sanger.ac.uk and
+XX
+CC Notes:
+CC
+CC Details of yeast sequencing at the Sanger Centre are available on
+CC the World Wide Web.
+CC (URL, http://www.sanger.ac.uk/Projects/S_pombe/)
+CC During 1995 to 1996 about 66% of S. pombe chromosome 1 was sequenced
+CC by the Sanger Centre. The sequencing of the S. pombe genome is now
+CC being continued with funding from The European Commission.
+CC Fourteen European sequencing laboratories, including the Sanger Centre,
+CC are participating in the project.
+CC
+CC Protein coding regions (CDS) have been predicted with the help
+CC of computer analysis using the Genefinder program in PomBase
+CC (an ACEDB database) with additional predictions for the
+CC branch-acceptor sites supplied by the program Sp3splice.
+CC CAUTION: It is possible that for any individual CDS we may have
+CC underestimated or overestimated the number of introns/exons or
+CC we may not have chosen the correct splice donor/acceptor sites.
+CC
+CC CDS are numbered using the following system eg SPBC25H2.01c.
+CC SP (S. pombe), B (chromosome 2), c25H2 (cosmid name),
+CC .01 (first CDS), c (complementary strand).
+CC
+CC The more significant matches with motifs in the PROSITE
+CC database are also included but some of these may be fortuitous.
+CC
+CC The length in codons is given for each CDS.
+CC
+CC IMPORTANT: This sequence MAY NOT be the entire insert of
+CC the sequenced clone. It may be shorter because we only
+CC sequence overlapping sections once, or longer, because we
+CC arrange for a small overlap between neighbouring submissions.
+CC
+CC Cosmid c1215 is overlapped at the 5' end by cosmid c1750,
+CC EMBL entry SPAB4534, accession number AB004534, and at the 3'
+CC end by cosmid c83, EMBL entry SPBC83, accession number AL035536.
+XX
+XX
+FH Key Location/Qualifiers
+FH
+FT source 1..6490
+FT /organism="Schizosaccharomyces pombe"
+FT /strain="972h-"
+FT /chromosome="II"
+FT /clone="cosmid c1215"
+FT /map="IIL"
+FT misc_feature complement(1..82)
+FT /note="nominal overlap with cosmid SPAB4534 (c1750) S.
+FT pombe chromosome 2"
+FT tRNA 36..107
+FT /note="tRNA Thr anticodon TGT, Cove score 78.51"
+FT rRNA 415..581
+FT /note="SPRG5SD K00771 Yeast (s.pombe) 5s rrna gene and
+FT flanks"
+FT CDS join(1501..1760,1844..2456)
+FT /fasta_file="fasta/gf.tab.seq.00001.out"
+FT /note="SPBC1215.01, len:290, SIMILARITY:Saccharomyces
+FT cerevisiae, YG2X_YEAST, hypothetical 45.1 kd protein in
+FT clb6-spt6 intergenic region, (389 aa), fasta scores: opt:
+FT 385, E():2.8e-19, (29.0% identity in 314 aa)"
+FT /gene="SPBC1215.01"
+FT /product="putative SURF-family protein"
+FT /colour=7
+FT /label=SPBC1215.01
+FT misc_feature 1761..1766
+FT /note="gtacgt, splice donor sequence"
+FT /colour=6
+FT misc_feature 1827..1843
+FT /note="ctaacataatcacttag, splice branch and acceptor"
+FT /colour=6
+FT CDS complement(join(2495..2602,2663..2881,2953..4071,4111..4372,4413..4849,4889..5007,5251..5389,5434..5466))
+FT /fasta_file="fasta/gf.tab.seq.00002.out"
+FT /note="SPBC1215.02c, len:811, SIMILARITY:Saccharomyces
+FT cerevisiae, DEC1_YEAST, dec1 protein, (796 aa), fasta
+FT scores: opt: 184, E():0.00014, (23.4% identity in 577 aa)"
+FT /gene="SPBC1215.02c"
+FT /product="similar to yeast DEC1 mitochondrial inheritance
+FT and actin cytoskeleton organisation protein"
+FT /colour=7
+FT /label=SPBC1215.02c
+FT misc_feature complement(2603..2612)
+FT /note="ctaataatag, splice branch and acceptor"
+FT /colour=6
+FT misc_feature complement(2657..2662)
+FT /note="gtacgt, splice donor sequence"
+FT /colour=6
+FT misc_feature complement(2882..2896)
+FT /note="ctaaccgaattatag, splice branch and acceptor"
+FT /colour=6
+FT misc_feature complement(2947..2952)
+FT /note="gtaagt, splice donor sequence"
+FT /colour=6
+FT misc_feature complement(4072..4085)
+FT /note="ttaactcgtcgtag, splice branch and acceptor"
+FT /colour=6
+FT misc_feature complement(4105..4110)
+FT /note="gtaagt, splice donor sequence"
+FT /colour=6
+FT misc_feature complement(4373..4387)
+FT /note="ctaacttctccatag, splice branch and acceptor"
+FT /colour=6
+FT misc_feature complement(4407..4412)
+FT /note="gtaagt, splice donor sequence"
+FT /colour=6
+FT misc_feature complement(4850..4861)
+FT /note="ctaactcctcag, splice branch and acceptor"
+FT /colour=6
+FT misc_feature complement(4883..4888)
+FT /note="gtaaga, splice donor sequence"
+FT /colour=6
+FT misc_feature complement(5008..5021)
+FT /note="ttaactatttgaag, splice branch and acceptor"
+FT /colour=6
+FT misc_feature complement(5245..5250)
+FT /note="gtaagt, splice donor sequence"
+FT /colour=6
+FT misc_feature complement(5390..5405)
+FT /note="ttaacatcctttttag, splice branch and acceptor"
+FT /colour=6
+FT misc_feature complement(5428..5433)
+FT /note="gtaagt, splice donor sequence"
+FT /colour=6
+FT misc_feature 6387..6490
+FT /note="nominal overlap with cosmid SPBC83 S. pombe
+FT chromosome 2"
+SQ Sequence 6490 BP; 2097 A; 1138 C; 1138 G; 2117 T; 0 other;
+ tatatataat ttaataaata cattccgacg atactgcctc tatggcttag tggtacagca 60
+ tcgcacttgt aatgcgaaga tccttggttc gattccgagt ggaggcatat acattatatt 120
+ atattctttt tcatgcggaa aaaagatttc aaatttttgg gtatgatatt aatatgactg 180
+ taacgttaat agcaaagtga gtgttaataa tgataaaata gcagcaaaat ctcttttccg 240
+ agtaagacgt tttccagtct aaatttggag tctgcagttg tttcgcaatt cttaatgtat 300
+ ggttatacta aatacaaact ttaaagctct gatttatgtt tgcaataaac taaaataaaa 360
+ gcacaaaaac ctttacccat taatttcaaa caacttataa actaccggta aacttttttt 420
+ ctaaccttta taatttataa actagaatgt ttaatgtcta cggccatacc taggcgaaaa 480
+ caccagttcc cgtccgatca ctgcagttaa gcgtctgagg gcctcgttag tactatggtt 540
+ ggagacaaca tgggaatccg gggtgctgta ggctattttt ttatatccgt ctttcttact 600
+ acttgcctaa caagtcatga tgtactctca aaatatgttt gcatgccttg taatattggt 660
+ tatggatagc tccttctgga cttgatcttt tgtagccaag aacaatgggt atagactctg 720
+ accttgtgat gttgtagcca cagattataa taggtatttt caagtacagt aacaaaaatc 780
+ ttctagtttt tttttagaaa ggatacacca agtataagca aattcaggaa ttgttgatta 840
+ aactgtcaac ttcggtaaaa ctttgggcat aagtagtgtg ggagcaagtt taactaaaat 900
+ tctattcaga tgtcgaatcc aaaccgctaa ttttgctcaa ctagcttttc ataaaaacca 960
+ attcatagtt tcatactaat aaagacgatt gtttacttta aaacatacgt cgtaagaaca 1020
+ tatattgctt tatcgaaaga taacaaatgt taagctatta tattatttaa ctatagcgca 1080
+ gatttcgctt cctttactta aaaaagacat gtgacttgta gaagcttgga gtgaatacgc 1140
+ aaaggtacct acttagacat tcgcgtctct cttagctgtc aacatcaaca aactggcccc 1200
+ gtattgaaca gtatcttact tgtcgaagga tttgactaag aaaattttat ttctttatag 1260
+ caatattccg ttttcgctta gaagattcta gtcaattgcc ctattctact tacgctttac 1320
+ agtagtatca gaagacctga gtgggatttt gctgctagta gaggccattc aagttaactc 1380
+ cgttttgcaa cattttaaaa gtttttgaat tgaatataaa tatcaattgt ttgattcctt 1440
+ ttaggattta atcttttctt tttatttttg tttcgattga atcttggatt cctgtctatc 1500
+ atgttttggt ggaaaagtgc tactaaattc acattctcaa agcgtggacc gtgtgtcttt 1560
+ cgctatttga gtactcttga aggaacaact gtgaggccta aaaaaaataa atttttagtt 1620
+ ggattgcttt ctgccgttcc aattgtcacg tttgctttag gaacttggca ggtaaagcga 1680
+ cgagaatgga aaatgggtat catcaataca ctcacggaaa ggcttcaaca gcccgcaatt 1740
+ ttattaccga aaactgttac gtacgttaag ttaacatata cacaaattgc acgttttgca 1800
+ attgaactgt cgttttttac attaagctaa cataatcact tagagagcaa gatacaaaaa 1860
+ aacttgagtg gactagggtt ttgcttcgtg gtgtgttttg tcacgaccaa gaaatgttgg 1920
+ tcggtccaag aacgaaggaa ggccaacctg gctatcacgt agtaacccca tttattttag 1980
+ acgatgggcg tcgaatttta gtcaacagag gatggattgc tcgatcattt gctgaacagt 2040
+ cttctcgaga tcctagttct ttacctaaag gtccagtggt cattgaaggt cttttgagac 2100
+ aacatactga taagccaaga tttatgatga agaatgagcc tgaaaaaaat tctttttact 2160
+ tcttaaatgt tcgtgagttt gcacaattga aaggaactct ccccattttg ataacagaac 2220
+ tacaaccatc gcttacaccg ttgcaagaag ccgatcatgt taagagaggc ttgcctcttg 2280
+ gtcatcctct aaaagttgaa attttcaaca gtcatacaga atatattatc acttggtatt 2340
+ ctctaagtgt ggtatcagct ataatgcttt acgtctattt taagagaggt tcaggcacat 2400
+ cttctctgaa ttctgcatac gaaagaagca agattctaaa caacaaacga ttataaaaaa 2460
+ ttttcatatt tataagtttc taaatattat ctacctaaaa ttttacaaat tttggaagct 2520
+ tgcttactgc gtccgtcgtt tgaatgtatg aatcgatcat tccttcacca acttgttttg 2580
+ caaacttcgg atcgtaagga acctattatt aggaagttag ttctcatgcc tataatttta 2640
+ atgctctata atcatcacgt acctgagttt cagataaatt gctcagccaa gagtttgaca 2700
+ acaattctga tacatatttt ctggcggcct tctttttatg cttcgtaatt ccagagatac 2760
+ ttcctaattt gttactgctg atgtttttaa gaagttggta ttgtctggta aattcttttt 2820
+ tcttggtagc tgacacgtga tataggaagc tgtttagaca agtgataagg tcatttatga 2880
+ tctataattc ggttagttta gaaattttta tatcattttt tttaaaaaaa aaaaccagtt 2940
+ tggtaaactt acttcagtgt actttgtcaa ttgacttaaa ggcgtggagt tctcataatc 3000
+ gaatgactca attaaatttt caatcgtttc gaacgaggaa ttttcgtagt ctccgttctt 3060
+ gacctttacc gaaagtaatc ccagttggat caataatttc atatgaacaa tttcttccga 3120
+ agttaattgc ttcgataaat cattgttttc gcacaaaact tccatttcct tagcacttaa 3180
+ aacggccttt tcaaaatcgc cgtttactat gctgtcttga acgagagaat gaccaatgac 3240
+ agtcaaatgg atccaaagcg tgtccggttt aggcgaattt cttaaacttt cttcaactgt 3300
+ tggcaattta tcagatccat aatctgcaaa gacctttaaa tctcgattat ctttcggaga 3360
+ tgaacatttg ggaagatact gtttgggtgg tttaaaagcg gtaagataat gtatcctagc 3420
+ ccgctcgacc aaagaaatgc ttttccaggt actgtggtct aaacgggatc ggaaattacg 3480
+ catatcttcg atttgagagt aagcaccatc ttcataagcc atagaaatca tctctggtgt 3540
+ ttcaaactca ttcgaaccat atattttgag acttgagtta atatagtgag aagtaacaga 3600
+ agatggataa taggtagtag cacgagtcaa gagataatga tcaagggtat cgttttgaat 3660
+ ttgcttaatg gacatagtgt cgtaaacttt agcagcagca gggaagcctc catcaagaag 3720
+ aagatataaa cgaataaggg gtagctttaa atgaaagtta tgttgactat aagtaatgcc 3780
+ tttttctaaa agacagattg cgtcaaaaat taaagcttgt ttttcggcag gttttaaatc 3840
+ cttattcccc tcccacatat atatcaatga atgaactgct aataacaaag cttcataacc 3900
+ gtgcgtaaag tcagtgggta ataagccttt acttaaagac aaaccctttt caaatgcgac 3960
+ gaagcatcta cgcacgtaat cgacaaccga ttctgcagta aacgactcaa agagcaaaaa 4020
+ atggatcttc agaagcaaaa cctcagcata taatttatcg actttttgag actacgacga 4080
+ gttaatattg aaagatgaat aaatacttac ttcattggat tcacctagat cagccaactt 4140
+ aaatgcatct aataaccggt gttgtgcatc aacattcagc ttcaatagat aaggtctcaa 4200
+ atcttcaaaa acaattggtt tcatatacag ctttttgata tagccaagta atgctgattc 4260
+ gtgttcttca ggaaaaaacc gtgcgctggc ttcaatccaa agtaaatgaa gatttctttt 4320
+ tgtgctgctg gttgacaacg ctttcaatat acaatccttt aatgggacta atctatggag 4380
+ aagttagtaa taatgcaaaa aaaaaaactt actttgaatc atcattggaa gcactatcca 4440
+ gcaaagcttt gcaaaccttc caatcagtat tcccagtttg gaaaagagaa agcgaaaacg 4500
+ tgaataaaga atcccaacgc gcacaggaag caagcaattc aagcttcctc aaaagaaggt 4560
+ cggcgtcagc atcaacaaag cgatcagcat cttgatgtat taaagcatct aacgctctgt 4620
+ ccttgtctcc cactaaaagc aacacgtcta aataaagatg aaactcctca caagaatcga 4680
+ tataacctgt tggtttttcg aaaatgagtt tagcagtttt ttcagctagt gctttcagca 4740
+ aacgttgttc aacctcattt tccgactttt tggacaaaag atacaaagat gagataaccc 4800
+ ataaggtatg tttcctagaa ggaaagttct tttgcaattc tacagcagcc tgaggagtta 4860
+ gtaaaaaaaa aacaaattaa gatcttacct ttctttggtg agacaatgat ttgatgcgaa 4920
+ tagatgcttt gaagtaagct aataagtttt tttcctgctt tccataagtt tgcaagaact 4980
+ tttcccaaaa tacaaacgat tcttctcctt caaatagtta ataacttaaa agtaagaggg 5040
+ taaaaacaag tccattgaga aataaaacgt tgcacttgaa tcatcaagct acgaaaagaa 5100
+ caaagatcgt ttttcttaag caaagtttaa ccgatcaaat aactaaagcc tttatctcaa 5160
+ ggaaatagta gaatattcaa aataaaaaat acgaccaaag tgctatcaac atttatgttc 5220
+ atctgttcaa tagaacctaa ttatacttac ccttcttttg atcatcataa acagcttgta 5280
+ taatgtctaa aagttccaag ctgttgatgg gagtcgattt taacggttct aaaagtgcta 5340
+ gagcctcggg accacgtcct gcctgagcca aggataacgc tgaataaacc taaaaaggat 5400
+ gttaacagct aaaaacataa ctcgattact tacaattgtt gattctttac tcccagaacg 5460
+ acgcattgta gtaggcaatg aaattaaagc ccaaacagta gtcagaagtt ggtaggtgtt 5520
+ gcagtcaaat tattattcta cagaggagaa tattatagcc agcgtggtag aatctggata 5580
+ tatatctact gcaaaagtgt aattgcattg gtttaaaggg tatactatgg ttaagtaata 5640
+ tattcacagc tgtacaattt acagtcataa ctaaaacttc cttaagccgt aaagaaatac 5700
+ ctggtgttgt aaaatttgtt gtatatccac ggcatggtca tataatgtga ttttgtgctc 5760
+ aaataaatat aaaatatgca taatttttgt acatttaatt tgagaaaccc atcttttgtt 5820
+ gagaggctgt caatgaatag cagtttcatt gaaaagcagc gggatgacca gaaaagtatt 5880
+ ttacaatggc aagggagtag aaagctagcg taatattcag aaagctaggt aattgagcaa 5940
+ tcctttaatt cattgctaag catgctaggt aaacgcagta aacctttcag ttttcattta 6000
+ ggtataaggc tgtttaatga gtatctccac taaatttaaa gatcaaaact cagtatcaat 6060
+ tcttaaaagt tttattttat ttaataatca tatacttctc ataatctttc aattttttcc 6120
+ ccattttgat gatattttta ttaatcctac agtaagctct atgatatcgt tattcttcaa 6180
+ ataggctggt cagcacgtgg acggtgttac ttatcgttaa ataaatcgta ctaaggaggt 6240
+ gcgatgtaaa tgatatgctt gtcaagtatt aactgctctc caccaaccgc cggtttaact 6300
+ gattattgtt gaaaagcgca gacgaagttt agagaattac tagcgtattt taaatttaat 6360
+ caacggacta ttttttattc ctttgagatc cgactttatc gctttgcttc taattttcca 6420
+ aaattcagtc tatctacgcg atccagccct gtttgcgtaa atttcatatt atttttcttt 6480
+ aaacgtttgg 6490
+//
diff --git a/etc/c1215.genbank b/etc/c1215.genbank
new file mode 100644
index 000000000..9e3c3d873
--- /dev/null
+++ b/etc/c1215.genbank
@@ -0,0 +1,277 @@
+LOCUS SPBC1215 6490 bp DNA PLN 16-JUL-1999
+DEFINITION S.pombe chromosome II cosmid c1215.
+ACCESSION AL096846
+VERSION AL096846.1 GI:5531459
+KEYWORDS actin cytoskeleton organisation; COX complex biogenesis; DEC1
+ homologue; mitochondrial inheritance; SURF-family protein.
+SOURCE fission yeast.
+ ORGANISM Schizosaccharomyces pombe
+ Eukaryota; Fungi; Ascomycota; Schizosaccharomycetes;
+ Schizosaccharomycetales; Schizosaccharomycetaceae;
+ Schizosaccharomyces.
+REFERENCE 1 (bases 1 to 6490)
+ AUTHORS Lyne,M.H., Rajandream,M.A., Barrell,B.G., Seeger,K., Quail,M. and
+ Harris,D.
+ TITLE Direct Submission
+ JOURNAL Submitted (16-JUL-1999) European Schizosaccharomyces genome
+ sequencing project, Sanger Centre, The Wellcome Trust Genome
+ Campus, Hinxton, Cambridge CB10 1SA, E-mail: barrell@sanger.ac.uk
+ and
+COMMENT Notes:
+ Details of yeast sequencing at the Sanger Centre are available on
+ the World Wide Web.
+ (URL, http://www.sanger.ac.uk/Projects/S_pombe/)
+ During 1995 to 1996 about 66% of S. pombe chromosome 1 was
+ sequenced by the Sanger Centre. The sequencing of the S. pombe
+ genome is now being continued with funding from The European
+ Commission. Fourteen European sequencing laboratories, including
+ the Sanger Centre, are participating in the project.
+ Protein coding regions (CDS) have been predicted with the help of
+ computer analysis using the Genefinder program in PomBase (an ACEDB
+ database) with additional predictions for the branch-acceptor sites
+ supplied by the program Sp3splice. CAUTION: It is possible that for
+ any individual CDS we may have underestimated or overestimated the
+ number of introns/exons or we may not have chosen the correct
+ splice donor/acceptor sites.
+ CDS are numbered using the following system eg SPBC25H2.01c. SP (S.
+ pombe), B (chromosome 2), c25H2 (cosmid name), .01 (first CDS), c
+ (complementary strand).
+ The more significant matches with motifs in the PROSITE database
+ are also included but some of these may be fortuitous.
+ The length in codons is given for each CDS.
+ IMPORTANT: This sequence MAY NOT be the entire insert of the
+ sequenced clone. It may be shorter because we only sequence
+ overlapping sections once, or longer, because we arrange for a
+ small overlap between neighbouring submissions.
+ Cosmid c1215 is overlapped at the 5' end by cosmid c1750, EMBL
+ entry SPAB4534, accession number AB004534, and at the 3' end by
+ cosmid c83, EMBL entry SPBC83, accession number AL035536.
+FEATURES Location/Qualifiers
+ source 1..6490
+ /organism="Schizosaccharomyces pombe"
+ /strain="972h-"
+ /db_xref="taxon:4896"
+ /chromosome="II"
+ /map="IIL"
+ /clone="cosmid c1215"
+ misc_feature complement(1..82)
+ /note="nominal overlap with cosmid SPAB4534 (c1750) S.
+ pombe chromosome 2"
+ tRNA 36..107
+ /note="tRNA Thr anticodon TGT, Cove score 78.51"
+ /product="tRNA-Thr"
+ rRNA 415..581
+ /note="SPRG5SD K00771 Yeast (s.pombe) 5s rrna gene and
+ flanks"
+ gene join(1501..1760,1844..2456)
+ /gene="SPBC1215.01"
+ CDS join(1501..1760,1844..2456)
+ /gene="SPBC1215.01"
+ /note="SPBC1215.01, len:290, SIMILARITY:Saccharomyces
+ cerevisiae, YG2X_YEAST, hypothetical 45.1 kd protein in
+ clb6-spt6 intergenic region, (389 aa), fasta scores: opt:
+ 385, E():2.8e-19, (29.0% identity in 314 aa)"
+ /codon_start=1
+ /label=SPBC1215.01
+ /product="putative SURF-family protein"
+ /protein_id="CAB50922.1"
+ /db_xref="GI:5531460"
+ /translation="MFWWKSATKFTFSKRGPCVFRYLSTLEGTTVRPKKNKFLVGLLS
+ AVPIVTFALGTWQVKRREWKMGIINTLTERLQQPAILLPKTVTEQDTKKLEWTRVLLR
+ GVFCHDQEMLVGPRTKEGQPGYHVVTPFILDDGRRILVNRGWIARSFAEQSSRDPSSL
+ PKGPVVIEGLLRQHTDKPRFMMKNEPEKNSFYFLNVREFAQLKGTLPILITELQPSLT
+ PLQEADHVKRGLPLGHPLKVEIFNSHTEYIITWYSLSVVSAIMLYVYFKRGSGTSSLN
+ SAYERSKILNNKRL"
+ misc_feature 1761..1766
+ /gene="SPBC1215.01"
+ /note="gtacgt, splice donor sequence"
+ misc_feature 1827..1843
+ /gene="SPBC1215.01"
+ /note="ctaacataatcacttag, splice branch and acceptor"
+ gene complement(join(2495..2602,2663..2881,2953..4071,
+ 4111..4372,4413..4849,4889..5007,5251..5389,5434..5466))
+ /gene="SPBC1215.02c"
+ CDS complement(join(2495..2602,2663..2881,2953..4071,
+ 4111..4372,4413..4849,4889..5007,5251..5389,5434..5466))
+ /gene="SPBC1215.02c"
+ /note="SPBC1215.02c, len:811, SIMILARITY:Saccharomyces
+ cerevisiae, DEC1_YEAST, dec1 protein, (796 aa), fasta
+ scores: opt: 184, E():0.00014, (23.4% identity in 577 aa)"
+ /codon_start=1
+ /label=SPBC1215.02c
+ /product="similar to yeast DEC1 mitochondrial inheritance
+ and actin cytoskeleton organisation protein"
+ /protein_id="CAB50923.1"
+ /db_xref="GI:5531461"
+ /translation="MRRSGSKESTIVYSALSLAQAGRGPEALALLEPLKSTPINSLEL
+ LDIIQAVYDDQKKGEESFVFWEKFLQTYGKQEKNLLAYFKASIRIKSLSHQRKAAVEL
+ QKNFPSRKHTLWVISSLYLLSKKSENEVEQRLLKALAEKTAKLIFEKPTGYIDSCEEF
+ HLYLDVLLLVGDKDRALDALIHQDADRFVDADADLLLRKLELLASCARWDSLFTFSLS
+ LFQTGNTDWKVCKALLDSASNDDSKLVPLKDCILKALSTSSTKRNLHLLWIEASARFF
+ PEEHESALLGYIKKLYMKPIVFEDLRPYLLKLNVDAQHRLLDAFKLADLGESNESQKV
+ DKLYAEVLLLKIHFLLFESFTAESVVDYVRRCFVAFEKGLSLSKGLLPTDFTHGYEAL
+ LLAVHSLIYMWEGNKDLKPAEKQALIFDAICLLEKGITYSQHNFHLKLPLIRLYLLLD
+ GGFPAAAKVYDTMSIKQIQNDTLDHYLLTRATTYYPSSVTSHYINSSLKIYGSNEFET
+ PEMISMAYEDGAYSQIEDMRNFRSRLDHSTWKSISLVERARIHYLTAFKPPKQYLPKC
+ SSPKDNRDLKVFADYGSDKLPTVEESLRNSPKPDTLWIHLTVIGHSLVQDSIVNGDFE
+ KAVLSAKEMEVLCENNDLSKQLTSEEIVHMKLLIQLGLLSVKVKNGDYENSSFETIEN
+ LIESFDYENSTPLSQLTKYTEIINDLITCLNSFLYHVSATKKKEFTRQYQLLKNISSN
+ KLGSISGITKHKKKAARKYVSELLSNSWLSNLSETQVPYDPKFAKQVGEGMIDSYIQT
+ TDAVSKLPKFVKF"
+ misc_feature complement(2603..2612)
+ /gene="SPBC1215.02c"
+ /note="ctaataatag, splice branch and acceptor"
+ misc_feature complement(2657..2662)
+ /gene="SPBC1215.02c"
+ /note="gtacgt, splice donor sequence"
+ misc_feature complement(2882..2896)
+ /gene="SPBC1215.02c"
+ /note="ctaaccgaattatag, splice branch and acceptor"
+ misc_feature complement(2947..2952)
+ /gene="SPBC1215.02c"
+ /note="gtaagt, splice donor sequence"
+ misc_feature complement(4072..4085)
+ /gene="SPBC1215.02c"
+ /note="ttaactcgtcgtag, splice branch and acceptor"
+ misc_feature complement(4105..4110)
+ /gene="SPBC1215.02c"
+ /note="gtaagt, splice donor sequence"
+ misc_feature complement(4373..4387)
+ /gene="SPBC1215.02c"
+ /note="ctaacttctccatag, splice branch and acceptor"
+ misc_feature complement(4407..4412)
+ /gene="SPBC1215.02c"
+ /note="gtaagt, splice donor sequence"
+ misc_feature complement(4850..4861)
+ /gene="SPBC1215.02c"
+ /note="ctaactcctcag, splice branch and acceptor"
+ misc_feature complement(4883..4888)
+ /gene="SPBC1215.02c"
+ /note="gtaaga, splice donor sequence"
+ misc_feature complement(5008..5021)
+ /gene="SPBC1215.02c"
+ /note="ttaactatttgaag, splice branch and acceptor"
+ misc_feature complement(5245..5250)
+ /gene="SPBC1215.02c"
+ /note="gtaagt, splice donor sequence"
+ misc_feature complement(5390..5405)
+ /gene="SPBC1215.02c"
+ /note="ttaacatcctttttag, splice branch and acceptor"
+ misc_feature complement(5428..5433)
+ /gene="SPBC1215.02c"
+ /note="gtaagt, splice donor sequence"
+ misc_feature 6387..6490
+ /note="nominal overlap with cosmid SPBC83 S. pombe
+ chromosome 2"
+BASE COUNT 2097 a 1138 c 1138 g 2117 t
+ORIGIN
+ 1 tatatataat ttaataaata cattccgacg atactgcctc tatggcttag tggtacagca
+ 61 tcgcacttgt aatgcgaaga tccttggttc gattccgagt ggaggcatat acattatatt
+ 121 atattctttt tcatgcggaa aaaagatttc aaatttttgg gtatgatatt aatatgactg
+ 181 taacgttaat agcaaagtga gtgttaataa tgataaaata gcagcaaaat ctcttttccg
+ 241 agtaagacgt tttccagtct aaatttggag tctgcagttg tttcgcaatt cttaatgtat
+ 301 ggttatacta aatacaaact ttaaagctct gatttatgtt tgcaataaac taaaataaaa
+ 361 gcacaaaaac ctttacccat taatttcaaa caacttataa actaccggta aacttttttt
+ 421 ctaaccttta taatttataa actagaatgt ttaatgtcta cggccatacc taggcgaaaa
+ 481 caccagttcc cgtccgatca ctgcagttaa gcgtctgagg gcctcgttag tactatggtt
+ 541 ggagacaaca tgggaatccg gggtgctgta ggctattttt ttatatccgt ctttcttact
+ 601 acttgcctaa caagtcatga tgtactctca aaatatgttt gcatgccttg taatattggt
+ 661 tatggatagc tccttctgga cttgatcttt tgtagccaag aacaatgggt atagactctg
+ 721 accttgtgat gttgtagcca cagattataa taggtatttt caagtacagt aacaaaaatc
+ 781 ttctagtttt tttttagaaa ggatacacca agtataagca aattcaggaa ttgttgatta
+ 841 aactgtcaac ttcggtaaaa ctttgggcat aagtagtgtg ggagcaagtt taactaaaat
+ 901 tctattcaga tgtcgaatcc aaaccgctaa ttttgctcaa ctagcttttc ataaaaacca
+ 961 attcatagtt tcatactaat aaagacgatt gtttacttta aaacatacgt cgtaagaaca
+ 1021 tatattgctt tatcgaaaga taacaaatgt taagctatta tattatttaa ctatagcgca
+ 1081 gatttcgctt cctttactta aaaaagacat gtgacttgta gaagcttgga gtgaatacgc
+ 1141 aaaggtacct acttagacat tcgcgtctct cttagctgtc aacatcaaca aactggcccc
+ 1201 gtattgaaca gtatcttact tgtcgaagga tttgactaag aaaattttat ttctttatag
+ 1261 caatattccg ttttcgctta gaagattcta gtcaattgcc ctattctact tacgctttac
+ 1321 agtagtatca gaagacctga gtgggatttt gctgctagta gaggccattc aagttaactc
+ 1381 cgttttgcaa cattttaaaa gtttttgaat tgaatataaa tatcaattgt ttgattcctt
+ 1441 ttaggattta atcttttctt tttatttttg tttcgattga atcttggatt cctgtctatc
+ 1501 atgttttggt ggaaaagtgc tactaaattc acattctcaa agcgtggacc gtgtgtcttt
+ 1561 cgctatttga gtactcttga aggaacaact gtgaggccta aaaaaaataa atttttagtt
+ 1621 ggattgcttt ctgccgttcc aattgtcacg tttgctttag gaacttggca ggtaaagcga
+ 1681 cgagaatgga aaatgggtat catcaataca ctcacggaaa ggcttcaaca gcccgcaatt
+ 1741 ttattaccga aaactgttac gtacgttaag ttaacatata cacaaattgc acgttttgca
+ 1801 attgaactgt cgttttttac attaagctaa cataatcact tagagagcaa gatacaaaaa
+ 1861 aacttgagtg gactagggtt ttgcttcgtg gtgtgttttg tcacgaccaa gaaatgttgg
+ 1921 tcggtccaag aacgaaggaa ggccaacctg gctatcacgt agtaacccca tttattttag
+ 1981 acgatgggcg tcgaatttta gtcaacagag gatggattgc tcgatcattt gctgaacagt
+ 2041 cttctcgaga tcctagttct ttacctaaag gtccagtggt cattgaaggt cttttgagac
+ 2101 aacatactga taagccaaga tttatgatga agaatgagcc tgaaaaaaat tctttttact
+ 2161 tcttaaatgt tcgtgagttt gcacaattga aaggaactct ccccattttg ataacagaac
+ 2221 tacaaccatc gcttacaccg ttgcaagaag ccgatcatgt taagagaggc ttgcctcttg
+ 2281 gtcatcctct aaaagttgaa attttcaaca gtcatacaga atatattatc acttggtatt
+ 2341 ctctaagtgt ggtatcagct ataatgcttt acgtctattt taagagaggt tcaggcacat
+ 2401 cttctctgaa ttctgcatac gaaagaagca agattctaaa caacaaacga ttataaaaaa
+ 2461 ttttcatatt tataagtttc taaatattat ctacctaaaa ttttacaaat tttggaagct
+ 2521 tgcttactgc gtccgtcgtt tgaatgtatg aatcgatcat tccttcacca acttgttttg
+ 2581 caaacttcgg atcgtaagga acctattatt aggaagttag ttctcatgcc tataatttta
+ 2641 atgctctata atcatcacgt acctgagttt cagataaatt gctcagccaa gagtttgaca
+ 2701 acaattctga tacatatttt ctggcggcct tctttttatg cttcgtaatt ccagagatac
+ 2761 ttcctaattt gttactgctg atgtttttaa gaagttggta ttgtctggta aattcttttt
+ 2821 tcttggtagc tgacacgtga tataggaagc tgtttagaca agtgataagg tcatttatga
+ 2881 tctataattc ggttagttta gaaattttta tatcattttt tttaaaaaaa aaaaccagtt
+ 2941 tggtaaactt acttcagtgt actttgtcaa ttgacttaaa ggcgtggagt tctcataatc
+ 3001 gaatgactca attaaatttt caatcgtttc gaacgaggaa ttttcgtagt ctccgttctt
+ 3061 gacctttacc gaaagtaatc ccagttggat caataatttc atatgaacaa tttcttccga
+ 3121 agttaattgc ttcgataaat cattgttttc gcacaaaact tccatttcct tagcacttaa
+ 3181 aacggccttt tcaaaatcgc cgtttactat gctgtcttga acgagagaat gaccaatgac
+ 3241 agtcaaatgg atccaaagcg tgtccggttt aggcgaattt cttaaacttt cttcaactgt
+ 3301 tggcaattta tcagatccat aatctgcaaa gacctttaaa tctcgattat ctttcggaga
+ 3361 tgaacatttg ggaagatact gtttgggtgg tttaaaagcg gtaagataat gtatcctagc
+ 3421 ccgctcgacc aaagaaatgc ttttccaggt actgtggtct aaacgggatc ggaaattacg
+ 3481 catatcttcg atttgagagt aagcaccatc ttcataagcc atagaaatca tctctggtgt
+ 3541 ttcaaactca ttcgaaccat atattttgag acttgagtta atatagtgag aagtaacaga
+ 3601 agatggataa taggtagtag cacgagtcaa gagataatga tcaagggtat cgttttgaat
+ 3661 ttgcttaatg gacatagtgt cgtaaacttt agcagcagca gggaagcctc catcaagaag
+ 3721 aagatataaa cgaataaggg gtagctttaa atgaaagtta tgttgactat aagtaatgcc
+ 3781 tttttctaaa agacagattg cgtcaaaaat taaagcttgt ttttcggcag gttttaaatc
+ 3841 cttattcccc tcccacatat atatcaatga atgaactgct aataacaaag cttcataacc
+ 3901 gtgcgtaaag tcagtgggta ataagccttt acttaaagac aaaccctttt caaatgcgac
+ 3961 gaagcatcta cgcacgtaat cgacaaccga ttctgcagta aacgactcaa agagcaaaaa
+ 4021 atggatcttc agaagcaaaa cctcagcata taatttatcg actttttgag actacgacga
+ 4081 gttaatattg aaagatgaat aaatacttac ttcattggat tcacctagat cagccaactt
+ 4141 aaatgcatct aataaccggt gttgtgcatc aacattcagc ttcaatagat aaggtctcaa
+ 4201 atcttcaaaa acaattggtt tcatatacag ctttttgata tagccaagta atgctgattc
+ 4261 gtgttcttca ggaaaaaacc gtgcgctggc ttcaatccaa agtaaatgaa gatttctttt
+ 4321 tgtgctgctg gttgacaacg ctttcaatat acaatccttt aatgggacta atctatggag
+ 4381 aagttagtaa taatgcaaaa aaaaaaactt actttgaatc atcattggaa gcactatcca
+ 4441 gcaaagcttt gcaaaccttc caatcagtat tcccagtttg gaaaagagaa agcgaaaacg
+ 4501 tgaataaaga atcccaacgc gcacaggaag caagcaattc aagcttcctc aaaagaaggt
+ 4561 cggcgtcagc atcaacaaag cgatcagcat cttgatgtat taaagcatct aacgctctgt
+ 4621 ccttgtctcc cactaaaagc aacacgtcta aataaagatg aaactcctca caagaatcga
+ 4681 tataacctgt tggtttttcg aaaatgagtt tagcagtttt ttcagctagt gctttcagca
+ 4741 aacgttgttc aacctcattt tccgactttt tggacaaaag atacaaagat gagataaccc
+ 4801 ataaggtatg tttcctagaa ggaaagttct tttgcaattc tacagcagcc tgaggagtta
+ 4861 gtaaaaaaaa aacaaattaa gatcttacct ttctttggtg agacaatgat ttgatgcgaa
+ 4921 tagatgcttt gaagtaagct aataagtttt tttcctgctt tccataagtt tgcaagaact
+ 4981 tttcccaaaa tacaaacgat tcttctcctt caaatagtta ataacttaaa agtaagaggg
+ 5041 taaaaacaag tccattgaga aataaaacgt tgcacttgaa tcatcaagct acgaaaagaa
+ 5101 caaagatcgt ttttcttaag caaagtttaa ccgatcaaat aactaaagcc tttatctcaa
+ 5161 ggaaatagta gaatattcaa aataaaaaat acgaccaaag tgctatcaac atttatgttc
+ 5221 atctgttcaa tagaacctaa ttatacttac ccttcttttg atcatcataa acagcttgta
+ 5281 taatgtctaa aagttccaag ctgttgatgg gagtcgattt taacggttct aaaagtgcta
+ 5341 gagcctcggg accacgtcct gcctgagcca aggataacgc tgaataaacc taaaaaggat
+ 5401 gttaacagct aaaaacataa ctcgattact tacaattgtt gattctttac tcccagaacg
+ 5461 acgcattgta gtaggcaatg aaattaaagc ccaaacagta gtcagaagtt ggtaggtgtt
+ 5521 gcagtcaaat tattattcta cagaggagaa tattatagcc agcgtggtag aatctggata
+ 5581 tatatctact gcaaaagtgt aattgcattg gtttaaaggg tatactatgg ttaagtaata
+ 5641 tattcacagc tgtacaattt acagtcataa ctaaaacttc cttaagccgt aaagaaatac
+ 5701 ctggtgttgt aaaatttgtt gtatatccac ggcatggtca tataatgtga ttttgtgctc
+ 5761 aaataaatat aaaatatgca taatttttgt acatttaatt tgagaaaccc atcttttgtt
+ 5821 gagaggctgt caatgaatag cagtttcatt gaaaagcagc gggatgacca gaaaagtatt
+ 5881 ttacaatggc aagggagtag aaagctagcg taatattcag aaagctaggt aattgagcaa
+ 5941 tcctttaatt cattgctaag catgctaggt aaacgcagta aacctttcag ttttcattta
+ 6001 ggtataaggc tgtttaatga gtatctccac taaatttaaa gatcaaaact cagtatcaat
+ 6061 tcttaaaagt tttattttat ttaataatca tatacttctc ataatctttc aattttttcc
+ 6121 ccattttgat gatattttta ttaatcctac agtaagctct atgatatcgt tattcttcaa
+ 6181 ataggctggt cagcacgtgg acggtgttac ttatcgttaa ataaatcgta ctaaggaggt
+ 6241 gcgatgtaaa tgatatgctt gtcaagtatt aactgctctc caccaaccgc cggtttaact
+ 6301 gattattgtt gaaaagcgca gacgaagttt agagaattac tagcgtattt taaatttaat
+ 6361 caacggacta ttttttattc ctttgagatc cgactttatc gctttgcttc taattttcca
+ 6421 aaattcagtc tatctacgcg atccagccct gtttgcgtaa atttcatatt atttttcttt
+ 6481 aaacgtttgg
+//
diff --git a/etc/c1215.seq b/etc/c1215.seq
new file mode 100644
index 000000000..94d788aba
--- /dev/null
+++ b/etc/c1215.seq
@@ -0,0 +1,110 @@
+>all bases
+tatatataatttaataaatacattccgacgatactgcctctatggcttagtggtacagca
+tcgcacttgtaatgcgaagatccttggttcgattccgagtggaggcatatacattatatt
+atattctttttcatgcggaaaaaagatttcaaatttttgggtatgatattaatatgactg
+taacgttaatagcaaagtgagtgttaataatgataaaatagcagcaaaatctcttttccg
+agtaagacgttttccagtctaaatttggagtctgcagttgtttcgcaattcttaatgtat
+ggttatactaaatacaaactttaaagctctgatttatgtttgcaataaactaaaataaaa
+gcacaaaaacctttacccattaatttcaaacaacttataaactaccggtaaacttttttt
+ctaacctttataatttataaactagaatgtttaatgtctacggccatacctaggcgaaaa
+caccagttcccgtccgatcactgcagttaagcgtctgagggcctcgttagtactatggtt
+ggagacaacatgggaatccggggtgctgtaggctatttttttatatccgtctttcttact
+acttgcctaacaagtcatgatgtactctcaaaatatgtttgcatgccttgtaatattggt
+tatggatagctccttctggacttgatcttttgtagccaagaacaatgggtatagactctg
+accttgtgatgttgtagccacagattataataggtattttcaagtacagtaacaaaaatc
+ttctagtttttttttagaaaggatacaccaagtataagcaaattcaggaattgttgatta
+aactgtcaacttcggtaaaactttgggcataagtagtgtgggagcaagtttaactaaaat
+tctattcagatgtcgaatccaaaccgctaattttgctcaactagcttttcataaaaacca
+attcatagtttcatactaataaagacgattgtttactttaaaacatacgtcgtaagaaca
+tatattgctttatcgaaagataacaaatgttaagctattatattatttaactatagcgca
+gatttcgcttcctttacttaaaaaagacatgtgacttgtagaagcttggagtgaatacgc
+aaaggtacctacttagacattcgcgtctctcttagctgtcaacatcaacaaactggcccc
+gtattgaacagtatcttacttgtcgaaggatttgactaagaaaattttatttctttatag
+caatattccgttttcgcttagaagattctagtcaattgccctattctacttacgctttac
+agtagtatcagaagacctgagtgggattttgctgctagtagaggccattcaagttaactc
+cgttttgcaacattttaaaagtttttgaattgaatataaatatcaattgtttgattcctt
+ttaggatttaatcttttctttttatttttgtttcgattgaatcttggattcctgtctatc
+atgttttggtggaaaagtgctactaaattcacattctcaaagcgtggaccgtgtgtcttt
+cgctatttgagtactcttgaaggaacaactgtgaggcctaaaaaaaataaatttttagtt
+ggattgctttctgccgttccaattgtcacgtttgctttaggaacttggcaggtaaagcga
+cgagaatggaaaatgggtatcatcaatacactcacggaaaggcttcaacagcccgcaatt
+ttattaccgaaaactgttacgtacgttaagttaacatatacacaaattgcacgttttgca
+attgaactgtcgttttttacattaagctaacataatcacttagagagcaagatacaaaaa
+aacttgagtggactagggttttgcttcgtggtgtgttttgtcacgaccaagaaatgttgg
+tcggtccaagaacgaaggaaggccaacctggctatcacgtagtaaccccatttattttag
+acgatgggcgtcgaattttagtcaacagaggatggattgctcgatcatttgctgaacagt
+cttctcgagatcctagttctttacctaaaggtccagtggtcattgaaggtcttttgagac
+aacatactgataagccaagatttatgatgaagaatgagcctgaaaaaaattctttttact
+tcttaaatgttcgtgagtttgcacaattgaaaggaactctccccattttgataacagaac
+tacaaccatcgcttacaccgttgcaagaagccgatcatgttaagagaggcttgcctcttg
+gtcatcctctaaaagttgaaattttcaacagtcatacagaatatattatcacttggtatt
+ctctaagtgtggtatcagctataatgctttacgtctattttaagagaggttcaggcacat
+cttctctgaattctgcatacgaaagaagcaagattctaaacaacaaacgattataaaaaa
+ttttcatatttataagtttctaaatattatctacctaaaattttacaaattttggaagct
+tgcttactgcgtccgtcgtttgaatgtatgaatcgatcattccttcaccaacttgttttg
+caaacttcggatcgtaaggaacctattattaggaagttagttctcatgcctataatttta
+atgctctataatcatcacgtacctgagtttcagataaattgctcagccaagagtttgaca
+acaattctgatacatattttctggcggccttctttttatgcttcgtaattccagagatac
+ttcctaatttgttactgctgatgtttttaagaagttggtattgtctggtaaattcttttt
+tcttggtagctgacacgtgatataggaagctgtttagacaagtgataaggtcatttatga
+tctataattcggttagtttagaaatttttatatcattttttttaaaaaaaaaaaccagtt
+tggtaaacttacttcagtgtactttgtcaattgacttaaaggcgtggagttctcataatc
+gaatgactcaattaaattttcaatcgtttcgaacgaggaattttcgtagtctccgttctt
+gacctttaccgaaagtaatcccagttggatcaataatttcatatgaacaatttcttccga
+agttaattgcttcgataaatcattgttttcgcacaaaacttccatttccttagcacttaa
+aacggccttttcaaaatcgccgtttactatgctgtcttgaacgagagaatgaccaatgac
+agtcaaatggatccaaagcgtgtccggtttaggcgaatttcttaaactttcttcaactgt
+tggcaatttatcagatccataatctgcaaagacctttaaatctcgattatctttcggaga
+tgaacatttgggaagatactgtttgggtggtttaaaagcggtaagataatgtatcctagc
+ccgctcgaccaaagaaatgcttttccaggtactgtggtctaaacgggatcggaaattacg
+catatcttcgatttgagagtaagcaccatcttcataagccatagaaatcatctctggtgt
+ttcaaactcattcgaaccatatattttgagacttgagttaatatagtgagaagtaacaga
+agatggataataggtagtagcacgagtcaagagataatgatcaagggtatcgttttgaat
+ttgcttaatggacatagtgtcgtaaactttagcagcagcagggaagcctccatcaagaag
+aagatataaacgaataaggggtagctttaaatgaaagttatgttgactataagtaatgcc
+tttttctaaaagacagattgcgtcaaaaattaaagcttgtttttcggcaggttttaaatc
+cttattcccctcccacatatatatcaatgaatgaactgctaataacaaagcttcataacc
+gtgcgtaaagtcagtgggtaataagcctttacttaaagacaaacccttttcaaatgcgac
+gaagcatctacgcacgtaatcgacaaccgattctgcagtaaacgactcaaagagcaaaaa
+atggatcttcagaagcaaaacctcagcatataatttatcgactttttgagactacgacga
+gttaatattgaaagatgaataaatacttacttcattggattcacctagatcagccaactt
+aaatgcatctaataaccggtgttgtgcatcaacattcagcttcaatagataaggtctcaa
+atcttcaaaaacaattggtttcatatacagctttttgatatagccaagtaatgctgattc
+gtgttcttcaggaaaaaaccgtgcgctggcttcaatccaaagtaaatgaagatttctttt
+tgtgctgctggttgacaacgctttcaatatacaatcctttaatgggactaatctatggag
+aagttagtaataatgcaaaaaaaaaaacttactttgaatcatcattggaagcactatcca
+gcaaagctttgcaaaccttccaatcagtattcccagtttggaaaagagaaagcgaaaacg
+tgaataaagaatcccaacgcgcacaggaagcaagcaattcaagcttcctcaaaagaaggt
+cggcgtcagcatcaacaaagcgatcagcatcttgatgtattaaagcatctaacgctctgt
+ccttgtctcccactaaaagcaacacgtctaaataaagatgaaactcctcacaagaatcga
+tataacctgttggtttttcgaaaatgagtttagcagttttttcagctagtgctttcagca
+aacgttgttcaacctcattttccgactttttggacaaaagatacaaagatgagataaccc
+ataaggtatgtttcctagaaggaaagttcttttgcaattctacagcagcctgaggagtta
+gtaaaaaaaaaacaaattaagatcttacctttctttggtgagacaatgatttgatgcgaa
+tagatgctttgaagtaagctaataagtttttttcctgctttccataagtttgcaagaact
+tttcccaaaatacaaacgattcttctccttcaaatagttaataacttaaaagtaagaggg
+taaaaacaagtccattgagaaataaaacgttgcacttgaatcatcaagctacgaaaagaa
+caaagatcgtttttcttaagcaaagtttaaccgatcaaataactaaagcctttatctcaa
+ggaaatagtagaatattcaaaataaaaaatacgaccaaagtgctatcaacatttatgttc
+atctgttcaatagaacctaattatacttacccttcttttgatcatcataaacagcttgta
+taatgtctaaaagttccaagctgttgatgggagtcgattttaacggttctaaaagtgcta
+gagcctcgggaccacgtcctgcctgagccaaggataacgctgaataaacctaaaaaggat
+gttaacagctaaaaacataactcgattacttacaattgttgattctttactcccagaacg
+acgcattgtagtaggcaatgaaattaaagcccaaacagtagtcagaagttggtaggtgtt
+gcagtcaaattattattctacagaggagaatattatagccagcgtggtagaatctggata
+tatatctactgcaaaagtgtaattgcattggtttaaagggtatactatggttaagtaata
+tattcacagctgtacaatttacagtcataactaaaacttccttaagccgtaaagaaatac
+ctggtgttgtaaaatttgttgtatatccacggcatggtcatataatgtgattttgtgctc
+aaataaatataaaatatgcataatttttgtacatttaatttgagaaacccatcttttgtt
+gagaggctgtcaatgaatagcagtttcattgaaaagcagcgggatgaccagaaaagtatt
+ttacaatggcaagggagtagaaagctagcgtaatattcagaaagctaggtaattgagcaa
+tcctttaattcattgctaagcatgctaggtaaacgcagtaaacctttcagttttcattta
+ggtataaggctgtttaatgagtatctccactaaatttaaagatcaaaactcagtatcaat
+tcttaaaagttttattttatttaataatcatatacttctcataatctttcaattttttcc
+ccattttgatgatatttttattaatcctacagtaagctctatgatatcgttattcttcaa
+ataggctggtcagcacgtggacggtgttacttatcgttaaataaatcgtactaaggaggt
+gcgatgtaaatgatatgcttgtcaagtattaactgctctccaccaaccgccggtttaact
+gattattgttgaaaagcgcagacgaagtttagagaattactagcgtattttaaatttaat
+caacggactattttttattcctttgagatccgactttatcgctttgcttctaattttcca
+aaattcagtctatctacgcgatccagccctgtttgcgtaaatttcatattatttttcttt
+aaacgtttgg
diff --git a/etc/feature_keys b/etc/feature_keys
new file mode 100644
index 000000000..67d773c1d
--- /dev/null
+++ b/etc/feature_keys
@@ -0,0 +1,72 @@
+# All feature keys and qualifiers for EMBL/GenBank feature tables
+
+# From: http://www.ebi.ac.uk/~faruque/art/keyqual.txt
+
+# key Qualifiers (@=mandatory)
+# ======= ========================
+- EC_number PCR_conditions allele anticodon bound_moiety cell_line cell_type chromosome citation clone clone_lib codon codon_start cons_splice country cultivar db_xref dev_stage direction ecotype environmental_sa evidence exception focus frequency function gene germline haplotype insertion_seq isolate isolation_source lab_host label locus_tag macronuclear map mod_base mol_type note number organelle organism partial phenotype plasmid pop_variant product protein_id proviral pseudo rearranged replace rpt_family rpt_type rpt_unit segment sequenced_mol serotype serovar sex specific_host specimen_voucher standard_name strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transl_except transl_table translation transposon usedin variety virion
+-10_signal allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin
+-35_signal allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin
+3'UTR allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
+3'clip allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
+5'UTR allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
+5'clip allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
+CAAT_signal allele citation db_xref evidence gene label locus_tag map note partial usedin
+CDS EC_number allele citation codon codon_start db_xref evidence exception function gene label locus_tag map note number operon partial product protein_id pseudo standard_name transl_except transl_table translation usedin
+C_region allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
+D-loop allele citation db_xref evidence gene label locus_tag map note partial usedin
+D_segment allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
+GC_signal allele citation db_xref evidence gene label locus_tag map note partial usedin
+J_segment allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
+LTR allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
+N_region allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
+RBS allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin
+STS allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin
+S_region allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
+TATA_signal allele citation db_xref evidence gene label locus_tag map note partial usedin
+V_region allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
+V_segment allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
+attenuator allele citation db_xref evidence gene label locus_tag map note operon partial phenotype usedin
+conflict @citation allele db_xref evidence gene label locus_tag map note replace usedin
+enhancer allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin
+exon EC_number allele citation codon codon_start db_xref evidence function gene label locus_tag map note number partial product pseudo standard_name transl_except usedin
+gap @estimated_length
+gene allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype product pseudo standard_name usedin
+iDNA allele citation db_xref evidence function gene label locus_tag map note number partial standard_name usedin
+intron allele citation cons_splice db_xref evidence function gene label locus_tag map note number partial standard_name usedin
+mRNA allele citation db_xref evidence exception function gene label locus_tag map note operon partial product pseudo standard_name transcript_id usedin
+mat_peptide EC_number allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin
+misc_RNA allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name usedin
+misc_binding @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial usedin
+misc_difference allele citation clone db_xref evidence gene label locus_tag map note partial phenotype replace standard_name usedin
+misc_feature allele citation db_xref evidence function gene label locus_tag map note number partial phenotype product pseudo standard_name usedin
+misc_recomb allele citation db_xref evidence gene label locus_tag map note organism partial standard_name usedin
+misc_signal allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype standard_name usedin
+misc_structure allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
+modified_base @mod_base allele citation db_xref evidence frequency gene label locus_tag map note usedin
+old_sequence @citation allele db_xref evidence gene label locus_tag map note partial replace usedin
+operon @operon allele citation db_xref evidence function label map note phenotype pseudo standard_name usedin
+oriT allele bound_moiety citation db_xref direction evidence gene label locus_tag map note rpt_family rpt_type rpt_unit standard_name usedin
+polyA_signal allele citation db_xref evidence gene label locus_tag map note partial usedin
+polyA_site allele citation db_xref evidence gene label locus_tag map note usedin
+precursor_RNA allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name usedin
+prim_transcript allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin
+primer_bind PCR_conditions allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin
+promoter allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype pseudo standard_name usedin
+protein_bind @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
+rRNA allele citation db_xref evidence function gene label locus_tag map note partial product pseudo standard_name usedin
+rep_origin allele citation db_xref direction evidence gene label locus_tag map note partial standard_name usedin
+repeat_region allele citation db_xref evidence function gene insertion_seq label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name transposon usedin
+repeat_unit allele citation db_xref evidence function gene label locus_tag map note partial rpt_family rpt_type rpt_unit usedin
+satellite allele citation db_xref evidence gene label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name usedin
+scRNA allele citation db_xref evidence function gene label locus_tag map note partial product pseudo standard_name usedin
+sig_peptide allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin
+snRNA allele citation db_xref evidence function gene label locus_tag map note partial product pseudo standard_name usedin
+snoRNA allele citation db_xref evidence function gene label locus_tag map note partial product pseudo standard_name usedin
+source @organism cell_line cell_type chloroplast chromoplast chromosome citation clone clone_lib country cultivar cyanelle db_xref dev_stage ecotype environmental_sample evidence focus frequency germline haplotype insertion_seq isolate isolation_source kinetoplast lab_host label macronuclear map mitochondrion mol_type note organelle plasmid pop_variant proviral rearranged segment sequenced_mol serotype serovar sex specific_host specimen_voucher strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transposon usedin variety virion
+stem_loop allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin
+tRNA allele anticodon citation db_xref evidence function gene label locus_tag map note partial product pseudo standard_name usedin
+terminator allele citation db_xref evidence gene label locus_tag map note operon partial standard_name usedin
+transit_peptide allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin
+unsure allele citation db_xref evidence gene label locus_tag map note replace usedin
+variation allele citation db_xref evidence frequency gene label locus_tag map note partial phenotype product replace standard_name usedin
diff --git a/etc/options b/etc/options
new file mode 100644
index 000000000..d19294923
--- /dev/null
+++ b/etc/options
@@ -0,0 +1,508 @@
+# The standard options file for Artemis
+
+# (Note that comment lines start with a hash (#) symbol)
+
+# $Header: //tmp/pathsoft/artemis/etc/options,v 1.1 2004-06-09 10:02:52 tjc Exp $
+
+# This file should contain option settings that look like this:
+#
+# option_name = option_value
+#
+# If the value of an options is too long to fit on one line it can be split
+# over several lines by ending each line with a backslash like this:
+#
+# option_name = option_value another_option_value \
+# a_third_option_value a_forth_option_value
+
+
+# This option will set the font size for all the Artemis windows.
+
+font_size = 12
+
+
+# Set the name of the font to use in Artemis. These possibilites are
+# available on all platforms:
+# Dialog, DialogInput, Monospaced, Serif, SansSerif, Symbol.
+
+font_name = Monospaced
+
+# This option is used to set the default minimum size (in amino acids)
+# of a "large" open reading frame, which controls which ORFS are
+# marked by the "Mark Open Reading Frames" menu item.
+
+minimum_orf_size = 100
+
+# Set the default value for the direct edit option (see
+# http://www.sanger.ac.uk/Software/Artemis/stable/manual/launch-window.html#LAUNCH-WINDOW-OPTIONS-DIRECT-EDIT
+# for more)
+direct_edit = yes
+
+# This setting controls which set of codons will be used for start codons.
+# This can be changed from the options menu.
+# There are two possible settings: eukaryote or prokaryote
+organism_type = eukaryote
+
+# This option gives the bases of the possible start codons
+eukaryotic_start_codons = atg
+prokaryotic_start_codons = atg gtg ttg
+
+
+# The translation_table option is used to lookup codon translations. The
+# table must have exactly 64 entries, and there is one entry for each codon.
+# The entries should appear in this order:
+# TTT, TTC, TTA, TTG,
+# TCT, TCC, ...,
+# ...
+
+# this is the default table:
+#
+# translation_table = \
+# f f l l \
+# s s s s \
+# y y # + \
+# c c * w \
+# \
+# l l l l \
+# p p p p \
+# h h q q \
+# r r r r \
+# \
+# i i i m \
+# t t t t \
+# n n k k \
+# s s r r \
+# \
+# v v v v \
+# a a a a \
+# d d e e \
+# g g g g
+
+# this is the eukaryotic mitochondrial table:
+#
+# translation_table = \
+# f f l l \
+# s s s s \
+# y y * * \
+# c c w w \
+# \
+# l l l l \
+# p p p p \
+# h h q q \
+# r r r r \
+# \
+# i i m m \
+# t t t t \
+# n n k k \
+# s s * * \
+# \
+# v v v v \
+# a a a a \
+# d d e e \
+# g g g g
+
+
+# the sequence of colour numbers must not have any gaps - if for example
+# colour_5 is missing then all colours with higher numbers will be ignored
+
+# the three numbers for each colour correspond to red, green and blue
+# respectively. each number is an intensity from 0 to 255
+
+# white
+colour_0 = 255 255 255
+# dark grey
+colour_1 = 100 100 100
+# red
+colour_2 = 255 0 0
+# green
+colour_3 = 0 255 0
+# blue
+colour_4 = 0 0 255
+# cyan
+colour_5 = 0 255 255
+# magenta
+colour_6 = 255 0 255
+# yellow
+colour_7 = 245 245 0
+# pale green
+colour_8 = 152 251 152
+# light sky blue
+colour_9 = 135 206 250
+# orange
+colour_10 = 255 165 0
+# brown
+colour_11 = 200 150 100
+# pink
+colour_12 = 255 200 200
+# light grey
+colour_13 = 170 170 170
+# black
+colour_14 = 0 0 0
+# reds:
+colour_15 = 255 63 63
+colour_16 = 255 127 127
+colour_17 = 255 191 191
+
+colour_of_CDS = 5
+colour_of_cds? = 7
+colour_of_BLASTCDS = 2
+colour_of_BLASTN_HIT = 6
+colour_of_CRUNCH_D = 2
+colour_of_CRUNCH_X = 15
+colour_of_source = 0
+colour_of_prim_tran = 0
+colour_of_stem_loop = 2
+colour_of_misc_feature = 3
+colour_of_misc_RNA = 12
+colour_of_delta = 3
+colour_of_LTR = 4
+colour_of_repeat_region = 9
+colour_of_repeat_unit = 9
+colour_of_terminator = 3
+colour_of_promoter = 3
+colour_of_intron = 1
+colour_of_exon = 7
+colour_of_mRNA = 1
+colour_of_tRNA = 8
+colour_of_TATA = 3
+colour_of_bldA = 2
+colour_of_GFF = 11
+
+colour_of_start_codon = 6
+
+# suffixes used on files that contain features - used in file requesters
+feature_file_suffixes = tab embl gbk genbank tab_embl gff feature feat \
+ art artemis
+
+# suffixes used on files that contain sequence - used in file requesters
+sequence_file_suffixes = embl gbk genbank tab_embl seq dna \
+ art artemis
+
+# this is the URL that contains the IOR of the EMBL server
+embl_ior_url = http://corba.ebi.ac.uk/EMBL/IOR/Embl.IOR
+
+# this is the URL that contains the IOR of the EnsEMBL server
+# ensembl_ior_url = file:///nfs/disk12/kmr/powmap/db.ior
+
+
+# the default height for the base plot window
+base_plot_height = 150
+
+
+# the default height for the feature plot window
+feature_plot_height = 160
+
+
+# if this option is no then the feature labels in the overview will be off at
+# startup (the default is yes)
+# overview_feature_labels = no
+
+
+# if this option is yes then the overview will start in one line per entry
+# mode (the default is no)
+# overview_one_line_per_entry = yes
+
+
+# if this option is "yes" then the feature list will be displayed on startup
+# (this is the default)
+show_list = yes
+
+
+# if this option is "yes" then the base view will be displayed on startup
+# (this is the default)
+show_base_view = yes
+
+
+# if this option is "yes" then the entry buttons will be displayed on
+# startup
+show_entry_buttons = yes
+
+
+# if this option is "yes" then artemis will offer to show the results of a
+# search when it finishes
+show_results = no
+
+
+# if this option is "yes" the "all features on frame lines" option will
+# default to true on start up
+features_on_frame_lines = no
+
+
+# if this option is "yes" the "feature labels" option will
+# default to true on start up
+feature_labels = yes
+
+
+# if this option is "yes" the "one line per entry" option will default to
+# true on start up
+one_line_per_entry = no
+
+
+# if this option is "yes" Sanger specific menu items and functions will be
+# visible in the display
+sanger_options = no
+
+
+# the full path to the editor used for editing the qualifiers
+#external_editor = emacs
+
+
+# if set to yes, borders will be drawn around each feature and each exon. if
+# set to no borders will only be drawn around the selected features.
+draw_feature_borders = yes
+
+
+# if set to yes, a direction arrow will be drawn around at the end of each
+# feature. if set to no, no arrows will be drawn.
+draw_feature_arrows = yes
+
+
+# the number of levels of undo to save or 0 if undo is disabled. more undo
+# levels will require more memory.
+undo_levels = 20
+
+
+# this list is added to the keys from the feature_keys file
+extra_keys = \
+ BLASTN_HIT CDS_BEFORE CDS_AFTER CDS_before CDS_after \
+ CDS_motif BLASTCDS polymorphism GFF WUBLASTN_HIT \
+ WUBLASTX_HIT BLASTX_HIT TBLASTX_HIT BLASTN_HIT \
+ CRUNCH_D CRUNCH_X fasta_record allele mutation splicesite \
+ TMM signalP
+
+# Names of qualifiers to search when attempting to find the primary or display
+# name of a gene. These qualifiers names are searched in order when looking
+# for gene names.
+display_name_qualifiers = primary_name synonym systematic_id \
+ temporary_systematic_id gene locus_tag label
+
+# Names of qualifiers to search when attempting to find the systematic name of
+# a gene
+systematic_name_qualifiers = systematic_id temporary_systematic_id \
+ locus_tag gene label
+
+
+# this list is added to the qualifiers from the qualifier_types file
+extra_qualifiers = \
+ CHROMO_LINK text \
+ C_processing "text" \
+ C_processing_BigPi "text" \
+ C_processing_DGPI "text" \
+ COM_NAME "text" \
+ FEAT_NAME text \
+ GO_component "text" \
+ GO_function "text" \
+ GO_process "text" \
+ GO_slim "text" \
+ GO "text" \
+ LOCUS "text" \
+ PUB_LOCUS text \
+ PUB_COMMENT "text" \
+ REPEAT_TYPE "text" \
+ SNP "text" \
+ algorithm "text" \
+ anchor "text" \
+ annotation_source "text" \
+ assembly_id "text" \
+ bb_orthologue "text" \
+ bound_moiety "text" \
+ bpp_orthologue "text" \
+ bp_orthologue "text" \
+ bicsw_file "text" \
+ blast_score text \
+ blast_file "text" \
+ blastn_file "text" \
+ blastp_file "text" \
+ blastp+go_file "text" \
+ blastp_match "text" \
+ blastx_file "text" \
+ cds_id "text" \
+ chloroplast "text" \
+ chromoplast "text" \
+ class "text" \
+ cleavage "text" \
+ cluster "text" \
+ color text \
+ colour text \
+ comment_Cterm "text" \
+ comment_Nterm "text" \
+ confidence_level "text" \
+ coord "text" \
+ contig_id "text" \
+ created "text" \
+ curation "text" \
+ curated_ortholog "text" \
+ cyanelle "text" \
+ domain "text" \
+ end_phase text \
+ exon_id "text" \
+ fasta_file "text" \
+ fasta_match "text" \
+ fastx_file "text" \
+ filename "text" \
+ function "text" \
+ gene "text" \
+ gene_id "text" \
+ gff_feature text \
+ gff_group text \
+ gff_seqname text \
+ gff_source text \
+ go_from_interpro "text" \
+ hp_match "text" \
+ hth_file "text" \
+ id "text" \
+ interaction "text" \
+ interpro "text" \
+ job "text" \
+ label text \
+ literature "text" \
+ manual none \
+ mitochondrion "text" \
+ modified "text" \
+ mutation "text" \
+ obsolete_name "text" \
+ obsolete_product "text" \
+ origid "text" \
+ ortholog "text" \
+ paralog "text" \
+ pepstats_file "text" \
+ percent_id text \
+ pfam_match "text" \
+ previous_systematic_id "text" \
+ primary_name "text" \
+ prosite_match "text" \
+ psu_db_xref "text" \
+ psu_domain "text" \
+ reserved_name "text" \
+ query_id text \
+ score text \
+ sequence_source "text" \
+ sequence_status "text" \
+ sigcleave_file "text" \
+ signal "text" \
+ similarity "text" \
+ smart_file "text" \
+ sptr_display "text" \
+ start_phase text \
+ subject_end text \
+ subject_id text \
+ subject_start text \
+ synonym "text" \
+ synteny "text" \
+ systematic_id "text" \
+ taxon_id "text" \
+ tblastn_file "text" \
+ tblastx_file "text" \
+ tb_orthologue "text" \
+ temporary_systematic_id "text" \
+ tmhelix "text" \
+ transferred_gene "text" \
+ transferred_locus_tag "text" \
+ transferred_note "text" \
+ transferred_primary_name "text" \
+ transferred_product "text" \
+ transferred_synonym "text" \
+ transferred_systematic_id "text" \
+ type "text"
+
+# this is a list of extra qualifiers that are legal but are not displayed in
+# popup menus (such as the one in the feature editor window). this hack is
+# used by diana.components.QualifierChoice to limit the number of qualifers
+# that are displayed in the popup menu. on some VMs if there are too many in
+# the popup the bottom ones aren't visible
+invisible_qualifiers = \
+ CHROMO_LINK \
+ C_processing \
+ C_processing_BigPi \
+ C_processing_DGPI \
+ COM_NAME \
+ FEAT_NAME \
+ LOCUS \
+ PUB_LOCUS \
+ PUB_COMMENT \
+ REPEAT_TYPE \
+ SNP \
+ bicsw_file \
+ blast_file \
+ blast_score \
+ blastn_file \
+ blastp+go_file \
+ blastp_file \
+ blastx_file \
+ cds_id \
+ chloroplast \
+ chromoplast \
+ codon \
+ comment_Cterm \
+ comment_Nterm \
+ created \
+ cyanelle \
+ end_phase \
+ exception \
+ exon_id \
+ fasta_file \
+ fasta_match \
+ gene_id \
+ gff_feature \
+ gff_group \
+ gff_seqname \
+ gff_source \
+ go_from_interpro \
+ hp_match \
+ hth_file \
+ interpro \
+ map \
+ mitochondrion \
+ modified \
+ number \
+ obsolete_gene_name \
+ pepstats_file \
+ percent_id \
+ pfam_match \
+ prosite_match \
+ psu_domain \
+ reserved_gene_name \
+ query_id \
+ sigcleave_file \
+ score \
+ smart_file \
+ start_phase \
+ tblastn_file \
+ tblastx_file \
+ temporary_systematic_id \
+ transl_table \
+ translation \
+ type \
+ usedin
+
+
+# These pairs consist of a program name and a parameter string.
+# For blast and fasta the parameter string is the name of the database to
+# search.
+feature_protein_programs = \
+ fasta %L \
+ sigcleave 0 \
+ pepstats - \
+ blastp swall \
+ tblastn embl_other \
+ hth - \
+ smart - \
+ clustalx PROTEIN \
+ jalview -
+
+feature_dna_programs = \
+ tblastx embl_other \
+ blastn embl_other \
+ blastx swall \
+ fastx %L \
+ clustalx DNA
+
+application_programs = \
+
+# this is the list of keys that should be displayed by default in the edit
+# window
+common_keys = \
+ allele attenuator CDS conflict exon intron LTR misc_feature misc_RNA mRNA \
+ mutation polyA_signal polyA_site promoter protein_bind RBS repeat_region \
+ repeat_unit rRNA scRNA snRNA source stem_loop STS TATA_signal terminator \
+ tRNA unsure variation -10_signal -35_signal CDS_motif gene \
+ BLASTN_HIT BLASTCDS 3'UTR 5'UTR
diff --git a/etc/pombe.usage b/etc/pombe.usage
new file mode 100644
index 000000000..bb7176ed1
--- /dev/null
+++ b/etc/pombe.usage
@@ -0,0 +1,20 @@
+UUU 32.2( 48423) UCU 30.5( 45913) UAU 21.8( 32829) UGU 8.9( 13371)
+UUC 13.0( 19519) UCC 12.1( 18149) UAC 11.8( 17721) UGC 5.6( 8372)
+UUA 26.0( 39138) UCA 17.9( 26850) UAA 1.3( 1944) UGA 0.5( 733)
+UUG 24.0( 36134) UCG 8.0( 12055) UAG 0.5( 705) UGG 10.9( 16364)
+
+CUU 25.3( 38015) CCU 21.9( 32964) CAU 16.3( 24577) CGU 16.3( 24495)
+CUC 7.3( 10922) CCC 8.4( 12619) CAC 6.4( 9653) CGC 6.2( 9316)
+CUA 8.6( 12957) CCA 12.7( 19075) CAA 27.3( 41066) CGA 7.9( 11896)
+CUG 6.3( 9503) CCG 4.6( 6910) CAG 10.9( 16457) CGG 3.0( 4487)
+
+AUU 35.0( 52636) ACU 22.9( 34419) AAU 33.9( 51009) AGU 14.7( 22108)
+AUC 12.6( 19000) ACC 10.9( 16378) AAC 17.9( 26895) AGC 9.2( 13905)
+AUA 13.1( 19726) ACA 13.9( 20898) AAA 39.3( 59079) AGA 11.1( 16742)
+AUG 20.9( 31376) ACG 6.5( 9744) AAG 25.2( 37825) AGG 5.1( 7615)
+
+GUU 29.3( 44015) GCU 30.2( 45397) GAU 38.1( 57240) GGU 22.0( 33101)
+GUC 11.0( 16497) GCC 11.6( 17518) GAC 15.8( 23749) GGC 8.5( 12717)
+GUA 12.3( 18451) GCA 15.7( 23649) GAA 44.3( 66550) GGA 15.7( 23623)
+GUG 8.3( 12422) GCG 5.3( 8011) GAG 21.3( 31979) GGG 4.3( 6497)
+
diff --git a/etc/qualifier_types b/etc/qualifier_types
new file mode 100644
index 000000000..f860210db
--- /dev/null
+++ b/etc/qualifier_types
@@ -0,0 +1,110 @@
+# Feature qualifiers for EMBL/GenBank feature tables
+#
+# From: http://www.ebi.ac.uk/~faruque/art/keyqual.txt
+#
+# valid qualifier types are:
+# (::) (text:text,text:text)
+# EC "n.n.n.n"
+# feature dbname::accno:location
+# item single text item
+# list one of the listed values
+# modbase one of the stored modbase values
+# none no value
+# number nn
+# (other) (text)
+# location a valid location range (or feature label)
+# real n.n within specified range
+# ref [nn]
+# text any text, no quotes added, spaces allowed if quoted
+# "text" quoted text, double any contained quotes
+# "opt" optional quoted text, double any contained quotes
+# "list" quoted text, list of accepted values
+#
+# if not specified, the default is text (so anything is accepted)
+#
+# Name required Type Value(s) ..
+allele no "text"
+anticodon yes (::) pos aa
+bound_moiety no "text"
+cell_line no "text"
+cell_type no "text"
+chromosome no "opt"
+citation no ref
+clone no "text"
+clone_lib no "text"
+codon no (::) seq aa
+codon_start yes number 1 3
+cons_splice yes (::) 5'site 3'site
+country no "text"
+cultivar no "text"
+db_xref no "text"
+dev_stage no "text"
+direction yes list LEFT RIGHT BOTH
+ecotype no "text"
+EC_number no "text"
+environmental_sample no none
+estimated_length no "text"
+evidence yes list EXPERIMENTAL NOT_EXPERIMENTAL
+exception no "text"
+focus no none
+frequency yes real 0.0 1.0
+function yes "text"
+gene no "text"
+germline yes none
+haplotype no "text"
+insertion_seq no "text"
+isolation_source no "text"
+isolate no "text"
+kinetoplast no "opt"
+label yes item
+lab_host no "text"
+locus_tag no "text"
+macronuclear no none
+map no "text"
+mod_base no modbase
+mol_type no "text"
+note no "text"
+number yes number 1 99999999
+operon no "text"
+organell no "text"
+organism yes "text"
+partial yes none
+PCR_conditions no "text"
+phenotype no "text"
+plasmid no "text"
+pop_variant no "text"
+product no "text"
+protein_id no "text"
+proviral yes none
+pseudo yes none
+rearranged yes none
+replace no "text"
+rpt_family no "text"
+rpt_type no list TANDEM INVERTED FLANKING TERMINAL DIRECT \
+ DISPERSED OTHER
+rpt_unit no location
+segment no "text"
+sequenced_mol no "list" "cDNA" "cDNA to genomic RNA" \
+ "cDNA to mRNA" "cDNA to other RNA" \
+ "cDNA to rRNA" "DNA" "mRNA" \
+ "RNA" "rRNA" "scRNA" "snRNA" "tRNA"
+serotype no "text"
+serovar no "text"
+sex no "text"
+specific_host no "text"
+specimen_voucher no "text"
+standard_name no "text"
+strain no "text"
+sub_clone no "text"
+sub_species no "text"
+sub_strain no "text"
+tissue_lib no "text"
+tissue_type no "text"
+transgenic no "text"
+translation no "text"
+transl_except no (::) pos aa
+transl_table no number 1 11
+transposon no "text"
+usedin no feature
+variety no "text"
+virion no none
diff --git a/etc/results_to_netscape b/etc/results_to_netscape
new file mode 100755
index 000000000..3de1626a4
--- /dev/null
+++ b/etc/results_to_netscape
@@ -0,0 +1,214 @@
+#!/bin/sh -
+
+# This script will send a file to netscape with database IDs linked to SRS.
+# To customize this script edit the $DATABASES and $SRS_SERVER variable in the
+# perl code below and the NETSCAPE variable at the top of the script.
+
+# To enable this in Artemis, sanger_options must be set to true in the options
+# file.
+
+NETSCAPE=/usr/bin/X11/real-netscape
+
+if [ -f "$DIANA_ENVIRONMENT_FILE" ]
+then
+ . $DIANA_ENVIRONMENT_FILE
+fi
+
+if [ $# = 0 ]
+then
+ echo no argument given 1>&2
+ exit 1
+fi
+
+file_arg=$1
+
+unique_bit=$$.`hostname`
+
+# sanger hack:
+file_arg=`echo $file_arg | sed 's@^/tmp_mnt/nfs/@/nfs/@' | sed 's@^/tmp_mnt/tmp_nfs/@/nfs/@'`
+# fix for pcs3:
+file_arg=`echo $file_arg | sed 's@^/yeastpub4/@/nfs/disk222/yeastpub4/@'`
+
+
+if [ -f ./$file_arg ]
+then
+ # the file is in the current directory - we need the full path so netscape
+ # can find the file
+ new_file=$PWD/$file_arg.$unique_bit.html
+else
+ new_file=$file_arg.$unique_bit.html
+fi
+
+cat <<EOF > $new_file
+<HTML>
+ <HEAD>
+ <TITLE>
+ Results for $file_arg
+ </TITLE>
+ </HEAD>
+ <BODY>
+<PRE>
+EOF
+
+perl -e '
+BEGIN {
+ # change these variable to list the databases to search for the IDs - the
+ # database names should be separated by spaces
+ $PROTEIN_DATABASES = "swall";
+ $DNA_DATABASES = "embl";
+
+ # change this to point to the wgetz script of your SRS server
+ $SRS_SERVER = "www.sanger.ac.uk/srs6bin/cgi-bin/wgetz?-e+";
+
+ $PROTEIN_DATABASES =~ s/ /%20/g;
+ $DNA_DATABASES =~ s/ /%20/g;
+
+ %GENEDB_PATTERNS = (tryp => q!Tb\d+\.\d+\.\d+|TRYP_\S+!,
+ leish => q!LmjF\d+.\d+!);
+
+ $GENEDB_PATTERN = join ("|", values %GENEDB_PATTERNS);
+
+ $BLAST_START_LINE = "Sequences producing High-scoring Segment Pairs|" .
+ "Sequences producing significant alignments:";
+ $FASTA_START_LINE = "The best scores are";
+
+ # the list of IDs we have seen so far
+ @ids = ();
+
+ # the list of IDs we have made anchors for so far
+ @anchored_ids = ();
+
+ $db_type = "unknown";
+}
+
+sub hyperlink_to_anchor
+{
+ $id = shift;
+ qq(<a href="#$id">$id</a>);
+}
+
+sub hyperlink_id
+{
+ $id = shift;
+
+ if ($db_type eq "dna") {
+ $r = qq#<a href="http://$SRS_SERVER\[\{$DNA_DATABASES\}-ID:$id*]|[\{$DNA_DATABASES\}-AccNumber:$id*]">$id</a>#;
+ } else {
+ for my $org (keys %GENEDB_PATTERNS) {
+ my $pattern = $GENEDB_PATTERNS{$org};
+
+ if ($id =~ /$pattern/) {
+ $r = qq#<a href="http://www.genedb.org/genedb/Search?organism=$org&name=$id">$id</a>#;
+ return $r
+ }
+ }
+
+ $r = qq#<a href="http://$SRS_SERVER\[\{$PROTEIN_DATABASES\}-ID:$id*]|[\{$PROTEIN_DATABASES\}-AccNumber:$id*]">$id</a>#;
+ }
+ return $r
+}
+
+$file_name = $ARGV[0];
+
+if ($file_name =~ /\.gz$/) {
+ open IN_FILE, "gzip -d < $file_name |" or die "failed to open $file_name\n";
+} else {
+ open IN_FILE, "$file_name" or die "failed to open $file_name\n";
+}
+
+while (<IN_FILE>) {
+ if ($. == 1) {
+ if (/^\s*([^\s]+)/) {
+ if (lc $1 eq "blastn" or lc $1 eq "tblastn" or lc $1 eq "tblastx") {
+ $db_type = "dna";
+ } else {
+ if (lc $1 eq "fasta" or lc $1 eq "blastp" or lc $1 eq "blastx") {
+ $db_type = "protein";
+ } else {
+ print "\nWARNING: could not identify file type: $1\n";
+ }
+ }
+ } else {
+ print "\nWARNING: could not identify file type\n";
+ }
+ }
+
+
+ # ignore header lines
+ if (1..m/$BLAST_START_LINE|$FASTA_START_LINE/) {
+ print;
+ next;
+ }
+
+ if (@ids && /^\s*$/) {
+ $summary_finished = 1;
+ }
+
+ if (/^(?:(?:>?>?(?:[A-Z]+:)?)(\w+)|($GENEDB_PATTERN)) /) {
+ $id = $1;
+
+ if (!defined $id) {
+ $id = $2;
+ }
+
+ if ($summary_finished) {
+ if ((grep {$_ eq $id} @ids) && (!grep {$_ eq $id} @anchored_ids)) {
+ # not anchored yet so make it an anchor
+ if (s/\b$id\b/"<a name=\"$id\">" . (hyperlink_id($id)) . "<\/a>"/e) {
+ push @anchored_ids, $id;
+ }
+ }
+ } else {
+ if (!grep {$_ eq $id} @ids) {
+ push @ids, $id;
+ }
+
+ s/$id/hyperlink_to_anchor($id)/ei;
+
+ if (!s/ $id/" " . hyperlink_id($id)/ei) {
+ # if the id occurs once in the line put a link at end of line
+ s/$/" LINK:" . hyperlink_id($id)/e;
+ }
+ }
+ }
+ print;
+}
+
+' $file_arg >> $new_file
+
+cat <<EOF >> $new_file;
+</PRE>
+ </BODY>
+</HTML>
+EOF
+
+# delete it at some point
+echo "rm -f $new_file > /dev/null 2>&1" | at now + 36 hours
+
+if $NETSCAPE -remote "openURL($new_file)"
+then
+ exit 0
+else
+ echo starting new netscape 2>&1
+ # netscape isn't running - so start it
+ ($NETSCAPE &)&
+
+ # now send the URL. we do things this way so that the script doesn't exit
+ # until netscape has successfully shown the URL
+
+ sleep 1
+
+ # don't exit the script until the file is successfully displayed or until
+ # 40 seconds is up
+ for i in 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
+ do
+ if $NETSCAPE -remote "openURL($new_file)" 2> /dev/null
+ then
+ exit 0
+ else
+ sleep 2
+ fi
+ done
+
+ exit 1
+fi
diff --git a/etc/run_blastn b/etc/run_blastn
new file mode 100755
index 000000000..ef5297bd1
--- /dev/null
+++ b/etc/run_blastn
@@ -0,0 +1,87 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_blastn,v 1.1 2004-06-09 10:02:58 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ DATABASE=$3 export DATABASE
+else
+ if [ $# = 2 ]
+ then
+ DATABASE=$2 export DATABASE
+ else
+ echo usage: $0 -onefile input_file output_file database
+ echo or: $0 file_of_filenames database
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ DATABASE=$3
+
+
+ ### change these lines:
+ EXEC=blastall
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to"
+ echo "$OUTPUT_FILE using database $DATABASE"
+
+
+ EXTRA_ARGS=
+
+ # add/change the flags to suit your site:
+ lsrun -v blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p blastn \
+ $EXTRA_ARGS 2>&1 > $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ # Artemis can read compressed files
+ gzip -9 $OUTPUT_FILE &
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_DATABASE
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_DATABASE
+fi
+
+exit 0
diff --git a/etc/run_blastp b/etc/run_blastp
new file mode 100755
index 000000000..2ac573c1b
--- /dev/null
+++ b/etc/run_blastp
@@ -0,0 +1,88 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_blastp,v 1.1 2004-06-09 10:02:59 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ DATABASE=$3 export DATABASE
+else
+ if [ $# = 2 ]
+ then
+ DATABASE=$2 export DATABASE
+ else
+ echo usage: $0 -onefile input_file output_file database
+ echo or: $0 file_of_filenames database
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ DATABASE=$3
+
+
+ ### change these lines:
+ EXEC=blastall
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to"
+ echo "$OUTPUT_FILE using database $DATABASE"
+
+
+ EXTRA_ARGS=
+
+ # add/change the flags to suit your site:
+ lsrun -R 'select[blast && mem > 500] rusage[r1m=1:mem=500]' -v \
+ blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p blastp \
+ $EXTRA_ARGS 2>&1 > $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ # Artemis can read compressed files
+ gzip -9 $OUTPUT_FILE &
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_DATABASE
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_DATABASE
+fi
+
+exit 0
diff --git a/etc/run_blastx b/etc/run_blastx
new file mode 100755
index 000000000..21c88d11b
--- /dev/null
+++ b/etc/run_blastx
@@ -0,0 +1,87 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_blastx,v 1.1 2004-06-09 10:03:00 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ DATABASE=$3 export DATABASE
+else
+ if [ $# = 2 ]
+ then
+ DATABASE=$2 export DATABASE
+ else
+ echo usage: $0 -onefile input_file output_file database
+ echo or: $0 file_of_filenames database
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ DATABASE=$3
+
+
+ ### change these lines:
+ EXEC=blastall
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to"
+ echo "$OUTPUT_FILE using database $DATABASE"
+
+
+ EXTRA_ARGS=
+
+ # add/change the flags to suit your site:
+ lsrun -v blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p blastx \
+ $EXTRA_ARGS 2>&1 > $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ # Artemis can read compressed files
+ gzip -9 $OUTPUT_FILE &
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_DATABASE
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_DATABASE
+fi
+
+exit 0
diff --git a/etc/run_clustalx b/etc/run_clustalx
new file mode 100755
index 000000000..1e40a7c0e
--- /dev/null
+++ b/etc/run_clustalx
@@ -0,0 +1,41 @@
+#!/bin/sh -
+
+# this script will run clustalx on a temporary file containing the concatenated
+# contents of files listed in a file of filenames
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_clustalx,v 1.1 2004-06-09 10:03:01 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# != 1 ]
+then
+ echo usage: $0 file_of_filenames
+fi
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+file_of_filenames=$1
+date=`date +"%y_%m_%d"`
+hostname=`hostname`
+temp_file_name=/tmp/artemis_temp.$$.$hostname.$date.clustalx_input.fasta
+
+cat $file_of_filenames | xargs cat > $temp_file_name
+
+# make sure that the identifiers are unique for clustalx
+perl -pne 'if (/^>(\S+)/) {
+ $name = $1;
+ if (exists $h{$name}) {
+ $i = $h{$name}++;
+ s/^>(\S+)/>$name.$i/;
+ } else {
+ $h{$name} = 0;
+ }
+}' $temp_file_name > $temp_file_name.processed
+
+clustalx $temp_file_name.processed
+
+exit 0
diff --git a/etc/run_fasta b/etc/run_fasta
new file mode 100755
index 000000000..b46d0dd56
--- /dev/null
+++ b/etc/run_fasta
@@ -0,0 +1,90 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fasta,v 1.1 2004-06-09 10:03:03 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ DATABASE=$3 export DATABASE
+else
+ if [ $# = 2 ]
+ then
+ DATABASE=$2 export DATABASE
+ else
+ echo usage: $0 -onefile input_file output_file database 1>&2
+ echo or: $0 file_of_filenames database 1>&2
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ DATABASE=$3
+
+
+ ### change these lines:
+
+ FASTLIBS=/nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs export FASTLIBS
+ EXEC=/nfs/disk222/yeastpub/bio-soft/fasta/fasta33
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE using database $DATABASE" 1>&2
+
+ # add/change the flags to suit your site:
+ COMMAND="$EXEC -B -S -q -b 100 -H $INPUT_FILE $DATABASE ktup 2"
+
+ echo "command line: $COMMAND" 1>&2
+
+# lsrun -R 'select[blast && mem > 500] rusage[r1m=1:mem=500]' -v $COMMAND 2>&1 > $OUTPUT_FILE |
+ bsub -q longblastq -R 'select[blast && mem > 500] rusage[r1m=1:mem=500]' -I $COMMAND 2>&1 > $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ # Artemis can read compressed files
+ gzip -9 $OUTPUT_FILE &
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_DATABASE
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_DATABASE
+fi
+
+exit 0
diff --git a/etc/run_fasta_orig b/etc/run_fasta_orig
new file mode 100755
index 000000000..63c87b3e3
--- /dev/null
+++ b/etc/run_fasta_orig
@@ -0,0 +1,90 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fasta_orig,v 1.1 2004-06-09 10:03:04 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ DATABASE=$3 export DATABASE
+else
+ if [ $# = 2 ]
+ then
+ DATABASE=$2 export DATABASE
+ else
+ echo usage: $0 -onefile input_file output_file database 1>&2
+ echo or: $0 file_of_filenames database 1>&2
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ DATABASE=$3
+
+
+ ### change these lines:
+
+ FASTLIBS=/nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs export FASTLIBS
+ EXEC=/nfs/disk222/yeastpub/bio-soft/fasta/fasta33
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE using database $DATABASE" 1>&2
+
+ # add/change the flags to suit your site:
+ COMMAND="$EXEC -B -S -q -b 40 -H $INPUT_FILE $DATABASE ktup 2"
+
+ echo "command line: $COMMAND" 1>&2
+
+ lsrun -R 'select[blast && mem > 500] rusage[r1m=1:mem=500]' -v \
+ $COMMAND 2>&1 > $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ # Artemis can read compressed files
+ gzip -9 $OUTPUT_FILE &
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_DATABASE
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_DATABASE
+fi
+
+exit 0
diff --git a/etc/run_fastx b/etc/run_fastx
new file mode 100644
index 000000000..b04a259a9
--- /dev/null
+++ b/etc/run_fastx
@@ -0,0 +1,89 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fastx,v 1.1 2004-06-09 10:03:05 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ DATABASE=$3 export DATABASE
+else
+ if [ $# = 2 ]
+ then
+ DATABASE=$2 export DATABASE
+ else
+ echo usage: $0 -onefile input_file output_file database 1>&2
+ echo or: $0 file_of_filenames database 1>&2
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ DATABASE=$3
+
+
+ ### change these lines:
+
+ FASTLIBS=/nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs export FASTLIBS
+ EXEC=/nfs/disk222/yeastpub/bio-soft/fasta/fastx33_t
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE using database $DATABASE" 1>&2
+
+ # add/change the flags to suit your site:
+ COMMAND="$EXEC -B -S -q -b 40 -H $INPUT_FILE $DATABASE ktup 2"
+
+ echo "command line: $COMMAND" 1>&2
+
+ $COMMAND 2>&1 > $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ # Artemis can read compressed files
+ gzip -9 $OUTPUT_FILE &
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_DATABASE
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_DATABASE
+fi
+
+exit 0
diff --git a/etc/run_hth b/etc/run_hth
new file mode 100755
index 000000000..a61aeca54
--- /dev/null
+++ b/etc/run_hth
@@ -0,0 +1,148 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_hth,v 1.1 2004-06-09 10:03:06 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ PARAMETERS=$3 export PARAMETERS
+else
+ if [ $# = 2 ]
+ then
+ PARAMETERS=$2 export PARAMETERS
+ else
+ echo usage: $0 -onefile input_file output_file parameters 1>&2
+ echo or: $0 file_of_filenames parameters 1>&2
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_PARAMETERS=`echo "echo $PARAMETERS" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ PARAMETERS=$3
+
+
+ ### change these lines:
+ EXEC=helixturnhelix
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE using database $PARAMETERS" 1>&2
+ echo "command line: $EXEC $PARAMETERS $INPUT_FILE" 1>&2
+
+ $EXEC $INPUT_FILE $OUTPUT_FILE $PARAMETERS 2> hth_errors.new
+
+ # add/change the flags to suit your site:
+ $EXEC $INPUT_FILE -outfile $OUTPUT_FILE $PARAMETERS 2>&1 |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_PARAMETERS
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_PARAMETERS
+fi
+
+if [ x$ONEFILE = x ]
+then
+ PEPFILES=`cat $1`
+else
+ PEPFILES=$1
+fi
+
+if [ -e hth/hth.tab ]
+then
+ mv -f hth/hth.tab hth/hth.tab.old
+fi
+
+for i in $PEPFILES
+do
+# write a tab file containing a feature for each hth
+perl -e '
+open PEPFILE, "$ARGV[0]" or die "$0: cannot open $ARGV[0]\n";
+
+my $first_line = <PEPFILE>;
+
+close PEPFILE;
+
+if ($first_line !~ m/^>(.*?), (.*) (\d+):(\d+)\s+(\S+)/) {
+ die "first line of $ARGV[0] is badly formatted\n";
+}
+
+my ($gene_name, $description, $pep_first_base,
+ $pep_last_base, $forward_or_back) = ($1, $2, $3, $4, $5);
+
+open HTHFILE, "$ARGV[1]" or die "$0: cannot open $ARGV[1]\n";
+
+my $score;
+my $first_match_base;
+
+while (<HTHFILE>) {
+ if (m/^Score (\d+) .* in .* at residue (\d+)/) {
+ $score = $1;
+ $first_match_base = $2;
+ }
+
+ if (m/^\s+Sequence:\s+(\S+)/ &&
+ defined ($score) && defined ($pep_first_base)) {
+ if ($forward_or_back eq "forward") {
+ my $start_base = $pep_first_base + ($first_match_base - 1) * 3;
+ my $end_base = $start_base + (length $1) * 3 - 1;
+ print <<EOF;
+FT CDS_motif $start_base..$end_base
+FT /note="Helix-turn-helix from $gene_name score $score"
+FT /label=hth
+EOF
+ } else {
+ my $end_base = $pep_last_base - ($first_match_base - 1) * 3;
+ my $start_base = $end_base - ((length $1) * 3 - 1);
+ print <<EOF;
+FT CDS_motif complement($start_base..$end_base)
+FT /note="Helix-turn-helix from $gene_name score $score"
+FT /label=hth
+EOF
+ }
+ }
+}
+' $i $i.out >> hth/hth.tab
+
+done
+
+exit 0
diff --git a/etc/run_jalview b/etc/run_jalview
new file mode 100755
index 000000000..bf214db58
--- /dev/null
+++ b/etc/run_jalview
@@ -0,0 +1,51 @@
+#!/bin/sh -
+
+# This script needs one argument - a file of file names.
+
+PERL_PROG='
+
+use strict;
+
+if (@ARGV < 1)
+{
+ die "$0 needs one argument - a file of sequence file names\n";
+}
+
+my $file = $ARGV[0];
+
+chomp $file;
+
+if (-e $file)
+{
+ my $msf_file = "$file.fasta_msf";
+
+ my $seqnum = 1;
+ open(LIST_FILE,$file);
+ while(my $line = <LIST_FILE>)
+ {
+ chomp($line);
+
+ #
+ # run descseq to ensure unique names
+ #
+ my $emboss_command_line = "descseq -append -name _$seqnum $line $line.new -auto";
+
+ open EMBOSS, "|$emboss_command_line" or
+ die "cannot open pipe to descseq: $!\n";
+ close EMBOSS;
+
+ unlink("$line");
+ rename("$line.new","$line");
+ $seqnum++;
+ }
+
+ my $emboss_command_line = "emma \"\@$file\" -filter -stdout -osf msf -dendoutfile /dev/null -outseq $msf_file";
+
+ open EMBOSS, "|$emboss_command_line" or
+ die "cannot open pipe to emma: $!\n";
+ close EMBOSS;
+ system "jalview", "$msf_file";
+}
+'
+
+perl -w -e "$PERL_PROG" "$@"
diff --git a/etc/run_jalview.orig b/etc/run_jalview.orig
new file mode 100755
index 000000000..03e6e537b
--- /dev/null
+++ b/etc/run_jalview.orig
@@ -0,0 +1,167 @@
+#!/bin/sh -
+
+# This script needs one argument - a file of file names.
+# Each name should refer to a file that contains a EMBL format feature.
+# The feature must have a /fasta_file= qualifier which is used to read the
+# FASTA search results for the feature and to find the protein sequence of the
+# feature. The sequence and the sequence of the FASTA hits will be passed to
+# jalview.
+
+PERL_PROG='
+
+use strict;
+
+if (@ARGV != 1) {
+ die "$0 needs one argument - a file of feature file names\n";
+}
+
+
+sub process_fasta
+{
+ my $feature_file = shift;
+ my $fasta_results_file = shift;
+
+ my $sequence_file;
+
+ if ($fasta_results_file =~ /(.*).out/) {
+ $sequence_file = $1;
+ } else {
+ die "cannot understand $fasta_results_file\n";
+ }
+
+ if (! -e $sequence_file) {
+ die "cannot find $sequence_file\n";
+ }
+
+ my $fasta_seq_for_alignment = "";
+
+ open SEQ_FILE, $sequence_file or die "cannot open $sequence_file: $!\n";
+
+ while (<SEQ_FILE>) {
+ $fasta_seq_for_alignment .= $_;
+ }
+
+ close SEQ_FILE;
+
+ if (-e $fasta_results_file) {
+ open FASTA_OUTPUT, $fasta_results_file
+ or die "cannot open $fasta_results_file: $!\n";
+ } else {
+ my $gzip_fasta_results_file = $fasta_results_file . ".gz";
+ if (-e $gzip_fasta_results_file) {
+ open FASTA_OUTPUT, "gzip -d < $gzip_fasta_results_file |"
+ or die "cannot open $gzip_fasta_results_file: $!\n";
+ } else {
+ die "cannot find $fasta_results_file or $gzip_fasta_results_file\n";
+ }
+ }
+
+
+ my $top_re = "^The best scores are:";
+
+ my $seen_top = 0;
+ my $seen_bottom = 0;
+
+ my @protein_ids = ();
+
+ while (<FASTA_OUTPUT>) {
+ if (/$top_re/) {
+ $seen_top = 1;
+ next;
+ }
+
+ if ($seen_top && /^\s*$/) {
+ $seen_bottom = 1;
+ next;
+ }
+
+ if ($seen_top && !$seen_bottom) {
+ if (/^(\S+)/) {
+ if (@protein_ids < 20) {
+ push @protein_ids, "$1"
+ } else {
+ last;
+ }
+ } else {
+ warn "cannot understand this line:\n$_\n";
+ }
+ }
+ }
+
+ my %hash = ();
+
+ @hash{@protein_ids} = (1) x @protein_ids;
+
+ @protein_ids = sort keys %hash;
+
+ my $protein_db = "swall";
+
+ # look for each of the IDs from the FASTA output in each of the DBs
+
+ for my $id (@protein_ids) {
+ my $fetch = "getz -sf fasta -f seq [swall-id:$id]";
+
+ my $temp_seq = "";
+
+ open FETCH, "$fetch |" or
+ die "cannot open pipe to $fetch: $!\n";
+
+ while (<FETCH>) {
+ $temp_seq .= $_;
+ }
+
+ close FETCH;
+
+ if ($? == 0) {
+ $fasta_seq_for_alignment .= $temp_seq;
+ } else {
+ print STDERR "$id was not found in $protein_db\n";
+ }
+ }
+
+ my $msf_file = "$feature_file.fasta_msf";
+
+ my $emboss_prog = "emma";
+
+ my $emboss_command_line = "$emboss_prog -filter -stdout -osf msf -dendoutfile /dev/null > $msf_file";
+
+ open EMBOSS, "|$emboss_command_line" or
+ die "cannot open pipe to $emboss_prog: $!\n";
+
+ print EMBOSS $fasta_seq_for_alignment;
+
+ close EMBOSS;
+
+ my $jalview_prog = "jalview";
+
+ print STDERR "\nstarting $jalview_prog:\n";
+
+ system "$jalview_prog", "$msf_file";
+}
+
+
+my $file;
+
+while (defined ($file = <>)) {
+ chomp $file;
+
+ if (-e $file) {
+ open IN_FILE, "$file\n" or die "cannot open $file\n";
+
+ my $line;
+
+ while (defined ($line = <IN_FILE>)) {
+ if ($line =~ m!/fasta_file="(.*)"!) {
+ my $fasta_results_file = $1;
+
+ process_fasta $file, $fasta_results_file;
+
+ last;
+ }
+ }
+
+ close IN_FILE;
+ }
+}'
+
+perl -w -e "$PERL_PROG" "$@"
diff --git a/etc/run_pepstats b/etc/run_pepstats
new file mode 100755
index 000000000..22239de3a
--- /dev/null
+++ b/etc/run_pepstats
@@ -0,0 +1,77 @@
+#!/bin/sh -
+
+# this script will run pepstats on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_pepstats,v 1.1 2004-06-09 10:03:10 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ PARAMETERS=$3 export PARAMETERS
+else
+ if [ $# = 2 ]
+ then
+ PARAMETERS=$2 export PARAMETERS
+ else
+ echo usage: $0 -onefile input_file output_file parameters 1>&2
+ echo or: $0 file_of_filenames parameters 1>&2
+ exit 1
+ fi
+fi
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+
+ ### change these lines:
+ EXEC=pepstats
+
+ COMMAND_LINE="$EXEC -filter $INPUT_FILE"
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE using parameters: $PARAMETERS" 1>&2
+ echo "command line: $COMMAND_LINE" 1>&2
+
+ # add/change the flags to suit your site:
+ (head -1 $INPUT_FILE | sed 's/^>//'; echo;
+ $COMMAND_LINE) 2>&1 > $OUTPUT_FILE | tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out
+ done
+
+else
+ run_one_prog $1 $2
+fi
+
+exit 0
diff --git a/etc/run_sigcleave b/etc/run_sigcleave
new file mode 100755
index 000000000..a8a073367
--- /dev/null
+++ b/etc/run_sigcleave
@@ -0,0 +1,78 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_sigcleave,v 1.1 2004-06-09 10:03:11 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ MINWEIGHT=$3
+else
+ if [ $# = 2 ]
+ then
+ MINWEIGHT=$2
+ else
+ echo usage: $0 -onefile input_file output_file minimum_weight 1>&2
+ echo or: $0 file_of_filenames minimum_weight 1>&2
+ exit 1
+ fi
+fi
+
+PARAMETERS="-minweight $MINWEIGHT"
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ PARAMETERS="$3 $4 $5 $6 $7 $8 $9"
+
+ ### change these lines:
+ EXEC=sigcleave
+
+ COMMAND_LINE="$EXEC $INPUT_FILE -outfile $OUTPUT_FILE $PARAMETERS"
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE using parameters: $PARAMETERS" 1>&2
+ echo "command line: $COMMAND_LINE" 1>&2
+
+ # add/change the flags to suit your site:
+ $COMMAND_LINE 2>&1 | tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $PARAMETERS
+ done
+
+else
+ run_one_prog $1 $2 $PARAMETERS
+fi
+
+exit 0
diff --git a/etc/run_smart b/etc/run_smart
new file mode 100755
index 000000000..cc9ffb592
--- /dev/null
+++ b/etc/run_smart
@@ -0,0 +1,95 @@
+#!/bin/sh -
+
+# this script will run SMART (http://smart.embl-heidelberg.de/) for an
+# sequence input file or on each file in a file of filenames. it uses
+# lynx to access send a query to the SMART web site and then writes
+# the output to a file in the same way as run_fasta and run_blastp.
+# see:
+# http://www.sanger.ac.uk/Software/Artemis/stable/manual/runmenu.html#RUNMENU-CONFIGURATION
+# for more details.
+
+# you will need the "GET" command from the perl LWP module to use this script
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_smart,v 1.1 2004-06-09 10:03:12 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 3 -a x$1 = x-onefile -o $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+else
+ if [ $# != 2 -a $# = != 1 ]
+ then
+ echo usage: $0 -onefile input_file output_file 1>&2
+ echo or: $0 file_of_filenames 1>&2
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_PARAMETERS=`echo "echo $PARAMETERS" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ PARAMETERS=$3
+
+ # remove the rubbish from the FASTA header and change the sequence
+ # into URL form
+ SEQUENCE=`perl -pne 'chomp; s/^>.*/>sequence/; s/ /\%20/g; $_ .= "%0D"' $INPUT_FILE`
+
+ SEQUENCE=`echo $SEQUENCE | sed 's/%0D$//'`
+
+ URL='http://smart.embl-heidelberg.de/smart/show_motifs.pl?INCLUDE_SIGNALP=INCLUDE_SIGNALP&DO_PROSPERO=DO_PROSPERO&DO_PFAM=DO_PFAM&SEQUENCE='"$SEQUENCE"
+
+ ### change these lines:
+ EXEC=lynx
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE" 1>&2
+
+ COMMAND="$EXEC -force_html -dump $URL"
+
+ echo "command line: $COMMAND" 1>&2
+
+ (echo "read from $URL"; echo) > $OUTPUT_FILE
+
+ $COMMAND 2>&1 >> $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_PARAMETERS
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_PARAMETERS
+fi
+
+exit 0
diff --git a/etc/run_tblastn b/etc/run_tblastn
new file mode 100755
index 000000000..321853d7a
--- /dev/null
+++ b/etc/run_tblastn
@@ -0,0 +1,88 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_tblastn,v 1.1 2004-06-09 10:03:13 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ DATABASE=$3 export DATABASE
+else
+ if [ $# = 2 ]
+ then
+ DATABASE=$2 export DATABASE
+ else
+ echo usage: $0 -onefile input_file output_file database 1>&2
+ echo or: $0 file_of_filenames database 1>&2
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ DATABASE=$3
+
+
+ ### change these lines:
+ EXEC=blastall
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE using database $DATABASE" 1>&2
+ echo "command line: $EXEC $DATABASE $INPUT_FILE" 1>&2
+
+
+ EXTRA_ARGS=
+
+ # add/change the flags to suit your site:
+ lsrun -v blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p tblastn \
+ $EXTRA_ARGS 2>&1 > $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ # Artemis can read compressed files
+ gzip -9 $OUTPUT_FILE &
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_DATABASE
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_DATABASE
+fi
+
+exit 0
diff --git a/etc/run_tblastx b/etc/run_tblastx
new file mode 100755
index 000000000..92fd500f0
--- /dev/null
+++ b/etc/run_tblastx
@@ -0,0 +1,87 @@
+#!/bin/sh -
+
+# this script will run a search program on a sequence input file or on each
+# file in a file of filenames
+
+# to customise this script see the function called run_one_prog below
+
+
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_tblastx,v 1.1 2004-06-09 10:03:14 tjc Exp $"
+
+PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
+
+
+if [ $# = 4 -a x$1 = x-onefile ]
+then
+ shift
+ ONEFILE=t
+ DATABASE=$3 export DATABASE
+else
+ if [ $# = 2 ]
+ then
+ DATABASE=$2 export DATABASE
+ else
+ echo usage: $0 -onefile input_file output_file database 1>&2
+ echo or: $0 file_of_filenames database 1>&2
+ exit 1
+ fi
+fi
+
+
+# expand any ~ or environment variables
+EXPANDED_DATABASE=`echo "echo $DATABASE" | /bin/csh -f`
+
+
+### change this function to suit your site:
+
+run_one_prog () {
+ INPUT_FILE=$1
+ OUTPUT_FILE=$2
+ DATABASE=$3
+
+
+ ### change these lines:
+ EXEC=blastall
+
+ echo "about to start $EXEC with input from $INPUT_FILE and output to" 1>&2
+ echo "$OUTPUT_FILE using database $DATABASE" 1>&2
+
+
+ EXTRA_ARGS=
+
+ # add/change the flags to suit your site:
+ lsrun -v blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p tblastx \
+ $EXTRA_ARGS 2>&1 > $OUTPUT_FILE |
+ tee ${PROG}_errors.new 1>&2
+
+ #### end of changes
+
+
+ # Artemis can read compressed files
+ gzip -9 $OUTPUT_FILE &
+
+ if [ -s ${PROG}_errors.new ]
+ then
+ ( echo ERROR running $PROG: ; echo;
+ echo ===================================================
+ cat ${PROG}_errors.new ) >> $OUTPUT_FILE
+ cat ${PROG}_errors.new >> ${PROG}_errors
+ fi
+}
+
+(echo "#!/bin/sh -"; echo "kill $$") > $PROG.kill
+
+chmod a+x $PROG.kill
+
+if [ x$ONEFILE = x ]
+then
+ for i in `cat $1`
+ do
+ run_one_prog $i $i.out $EXPANDED_DATABASE
+ done
+
+else
+ run_one_prog $1 $2 $EXPANDED_DATABASE
+fi
+
+exit 0
--
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