From 52d7b5bb2bc182201c6d0cf128b6467110e387a2 Mon Sep 17 00:00:00 2001 From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04> Date: Tue, 25 Nov 2008 14:18:59 +0000 Subject: [PATCH] swap featureloc.rank for query and subject sequence git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9430 ee4ac58c-ac51-4696-9907-e4b3aa274f04 --- uk/ac/sanger/artemis/chado/ArtemisUtils.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/uk/ac/sanger/artemis/chado/ArtemisUtils.java b/uk/ac/sanger/artemis/chado/ArtemisUtils.java index 2c357a12a..82e76f486 100644 --- a/uk/ac/sanger/artemis/chado/ArtemisUtils.java +++ b/uk/ac/sanger/artemis/chado/ArtemisUtils.java @@ -494,12 +494,12 @@ public class ArtemisUtils // query location String queryLoc = getString(qualifier_strings, "query"); - final FeatureLoc featureLoc = getFeatureLoc(queryLoc, queryFeature, strand, 1); + final FeatureLoc featureLoc = getFeatureLoc(queryLoc, queryFeature, strand, 0); matchFeature.addFeatureLocsForFeatureId(featureLoc); // subject location String subjectLoc = getString(qualifier_strings, "subject"); - final FeatureLoc subjectFeatureLoc = getFeatureLoc(subjectLoc, subjectFeature, strand, 0); + final FeatureLoc subjectFeatureLoc = getFeatureLoc(subjectLoc, subjectFeature, strand, 1); matchFeature.addFeatureLocsForFeatureId(subjectFeatureLoc); return analysisFeature; -- GitLab