From 52d7b5bb2bc182201c6d0cf128b6467110e387a2 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Tue, 25 Nov 2008 14:18:59 +0000
Subject: [PATCH] swap featureloc.rank for query and subject sequence

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9430 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
 uk/ac/sanger/artemis/chado/ArtemisUtils.java | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/uk/ac/sanger/artemis/chado/ArtemisUtils.java b/uk/ac/sanger/artemis/chado/ArtemisUtils.java
index 2c357a12a..82e76f486 100644
--- a/uk/ac/sanger/artemis/chado/ArtemisUtils.java
+++ b/uk/ac/sanger/artemis/chado/ArtemisUtils.java
@@ -494,12 +494,12 @@ public class ArtemisUtils
 
     // query location
     String queryLoc = getString(qualifier_strings, "query");
-    final FeatureLoc featureLoc = getFeatureLoc(queryLoc, queryFeature, strand, 1);
+    final FeatureLoc featureLoc = getFeatureLoc(queryLoc, queryFeature, strand, 0);
     matchFeature.addFeatureLocsForFeatureId(featureLoc);
 
     // subject location
     String subjectLoc = getString(qualifier_strings, "subject");
-    final FeatureLoc subjectFeatureLoc = getFeatureLoc(subjectLoc, subjectFeature, strand, 0);
+    final FeatureLoc subjectFeatureLoc = getFeatureLoc(subjectLoc, subjectFeature, strand, 1);
     matchFeature.addFeatureLocsForFeatureId(subjectFeatureLoc);
 
     return analysisFeature;
-- 
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