diff --git a/etc/run_tblastx b/etc/run_tblastx index c2b09bb8fbe7a9b37a05368faadd283578de295a..c6af66b624be72eb956a426402354745f2aebff7 100755 --- a/etc/run_tblastx +++ b/etc/run_tblastx @@ -6,7 +6,7 @@ # to customise this script see the function called run_one_prog below -RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_tblastx,v 1.2 2004-10-05 16:01:40 tjc Exp $" +RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_tblastx,v 1.3 2005-06-09 13:40:12 tjc Exp $" PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'` @@ -62,12 +62,14 @@ run_one_prog () { if [ $REMOTE = "Y" ]; then WDIR=`pwd` export WDIR - rsh babel "cd $WDIR; lsrun -v blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p tblastx \ - $EXTRA_ARGS >! $OUTPUT_FILE" +# rsh babel "cd $WDIR; lsrun -v blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p tblastx \ +# $EXTRA_ARGS >! $OUTPUT_FILE" + rsh babel "cd $WDIR; bsub -q longblastq -o $OUTPUT_FILE -e ${PROG}_errors.new -I flexi_blast.pl -tx $DATABASE $INPUT_FILE $EXTRA_ARGS" else - lsrun -v blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p tblastx \ - $EXTRA_ARGS 2>&1 > $OUTPUT_FILE | - tee ${PROG}_errors.new 1>&2 +# lsrun -v blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p tblastx \ +# $EXTRA_ARGS 2>&1 > $OUTPUT_FILE | +# tee ${PROG}_errors.new 1>&2 + bsub -q longblastq -o $OUTPUT_FILE -e ${PROG}_errors.new -I flexi_blast.pl -tx $DATABASE $INPUT_FILE $EXTRA_ARGS fi #### end of changes