From 55e5a38899f5131186136db217a7e655d02b3fa8 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Tue, 22 Apr 2008 08:39:24 +0000
Subject: [PATCH] add getFeatureSynonymsByFeatureIds
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7269 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
artemis_sqlmap/FeatureSynonym.xml | 20 +++++++++++++++++++-
uk/ac/sanger/artemis/chado/GmodDAO.java | 7 +++++++
uk/ac/sanger/artemis/chado/IBatisDAO.java | 6 ++++++
uk/ac/sanger/artemis/chado/JdbcDAO.java | 5 +++++
4 files changed, 37 insertions(+), 1 deletion(-)
diff --git a/artemis_sqlmap/FeatureSynonym.xml b/artemis_sqlmap/FeatureSynonym.xml
index b98d2c2ac..c7eade932 100644
--- a/artemis_sqlmap/FeatureSynonym.xml
+++ b/artemis_sqlmap/FeatureSynonym.xml
@@ -27,7 +27,7 @@
<result property="pub.pubId" column="pub_id"/>
<result property="current" column="is_current"/>
<result property="internal" column="is_internal"/>
- <result property="synonym.synonymId" column="synonym_id"/>
+ <result property="synonym.synonymId" column="synonym_id"/>
<result property="synonym.name" column="name"/>
<result property="synonym.synonymSgml" column="synonym_sgml"/>
<result property="synonym.cvTerm.cvTermId" column="type_id" />
@@ -41,6 +41,15 @@
<result property="internal" column="is_internal"/>
<result property="synonym" column="synonym_id" select="getSynonymBySynonymId"/>
</resultMap>
+
+ <resultMap id="map-alias-part-lazy2"
+ class="FeatureSynonym">
+ <result property="feature.featureId" column="feature_id"/>
+ <result property="pub.pubId" column="pub_id"/>
+ <result property="current" column="is_current"/>
+ <result property="internal" column="is_internal"/>
+ <result property="synonym" resultMap="Synonym.map-synonym-lazy"/>
+ </resultMap>
<resultMap id="map-alias-lazy"
class="FeatureSynonym">
@@ -93,6 +102,15 @@
-->
</select>
+ <select id="getFeatureSynonymsByFeatureIds" resultMap="map-alias-part-lazy2">
+ SELECT fs.*, s.name, s.synonym_sgml, s.type_id
+ FROM feature_synonym fs
+ LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id
+ WHERE fs.feature_id IN
+ <iterate open="(" close=")" conjunction=","> $[]$ </iterate>
+ </select>
+
+
<select id="getLazyFeatureSynonymsByUniquename" resultMap="map-alias-part-lazy"
parameterClass="FeatureSynonym">
SELECT fs.*
diff --git a/uk/ac/sanger/artemis/chado/GmodDAO.java b/uk/ac/sanger/artemis/chado/GmodDAO.java
index a9e41d916..e3fef0722 100644
--- a/uk/ac/sanger/artemis/chado/GmodDAO.java
+++ b/uk/ac/sanger/artemis/chado/GmodDAO.java
@@ -139,6 +139,13 @@ public abstract class GmodDAO
*/
public abstract List getFeatureSynonymsBySrcFeature(Feature srcFeature);
+ /**
+ * Return the FeatureSynonym's for all Feature's given their feature_id's
+ * @param
+ * @return
+ */
+ public abstract List getFeatureSynonymsByFeatureIds(List featureIds);
+
/**
* Return a list of features that have this particular cvterm
* @param cvTermName the CvTerm name
diff --git a/uk/ac/sanger/artemis/chado/IBatisDAO.java b/uk/ac/sanger/artemis/chado/IBatisDAO.java
index 76612f15e..b4817b7e8 100644
--- a/uk/ac/sanger/artemis/chado/IBatisDAO.java
+++ b/uk/ac/sanger/artemis/chado/IBatisDAO.java
@@ -387,6 +387,12 @@ public class IBatisDAO extends GmodDAO
sqlMap.queryForList("getFeatureSynonymsBySrcFeature", srcFeature);
}
+ public List getFeatureSynonymsByFeatureIds(final List featuresIds)
+ {
+ return
+ sqlMap.queryForList("getFeatureSynonymsByFeatureIds", featuresIds);
+ }
+
/**
* Return all the FeatureDbXRefs for a given feature, <b>specified by name</b>, or all if
* <code>null</code> is passed
diff --git a/uk/ac/sanger/artemis/chado/JdbcDAO.java b/uk/ac/sanger/artemis/chado/JdbcDAO.java
index c1d80b26a..e8c2492c8 100644
--- a/uk/ac/sanger/artemis/chado/JdbcDAO.java
+++ b/uk/ac/sanger/artemis/chado/JdbcDAO.java
@@ -136,6 +136,11 @@ public class JdbcDAO extends GmodDAO
return null;
}
+ public List getFeatureSynonymsByFeatureIds(final List featuresIds)
+ {
+ return null;
+ }
+
public Feature getResiduesByUniqueName(String uniqueName)
{
// TODO Auto-generated method stub
--
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