diff --git a/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java b/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java index 1c7277ccf9576a8f48b4ec43ece6c6695878acf6..3c8f42b87e785df1f77e24f033d03b9b621c7ecf 100644 --- a/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java +++ b/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java @@ -200,14 +200,44 @@ public class ReadAndWriteEntry { try { - Entry entry = ReadAndWriteEntry.readEntryFromDatabase("Pf3D7_03"); + /*Entry entry = ReadAndWriteEntry.readEntryFromDatabase("Pf3D7_03"); ReadAndWriteEntry.writeDatabaseEntryToFile( entry, new File("Pf3D7_03.flatten"), true, true, false, DocumentEntryFactory.EMBL_FORMAT, null); ReadAndWriteEntry.writeDatabaseEntryToFile( entry, new File("Pf3D7_03.not-flatten"), false, true, false, + DocumentEntryFactory.EMBL_FORMAT, null);*/ + + // + // + + final String names[] = { + "bin.fas", + "chab01.fas", + "chab02.fas", + "chab03.fas", + "chab04.fas", + "chab05.fas", + "chab06.fas", + "chab07.fas", + "chab08.fas", + "chab09.fas", + "chab10.fas", + "chab11.fas", + "chab12.fas", + "chab13.fas", + "chab14.fas", + "chab99.fas" }; + + for(int i=0;i < names.length; i++) + { + System.out.println(i+" "+names[i]); + Entry entry = ReadAndWriteEntry.readEntryFromDatabase(names[i]); + ReadAndWriteEntry.writeDatabaseEntryToFile( + entry, new File(names[i]+".embl"), true, true, false, DocumentEntryFactory.EMBL_FORMAT, null); + } } catch(Exception e) {