From 56012c72ac2d6f5b5dc167c26ca4a3b3c1c36d24 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Tue, 14 Oct 2008 10:08:59 +0000
Subject: [PATCH] update main
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9002 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../sanger/artemis/io/ReadAndWriteEntry.java | 32 ++++++++++++++++++-
1 file changed, 31 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java b/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java
index 1c7277ccf..3c8f42b87 100644
--- a/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java
+++ b/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java
@@ -200,14 +200,44 @@ public class ReadAndWriteEntry
{
try
{
- Entry entry = ReadAndWriteEntry.readEntryFromDatabase("Pf3D7_03");
+ /*Entry entry = ReadAndWriteEntry.readEntryFromDatabase("Pf3D7_03");
ReadAndWriteEntry.writeDatabaseEntryToFile(
entry, new File("Pf3D7_03.flatten"), true, true, false,
DocumentEntryFactory.EMBL_FORMAT, null);
ReadAndWriteEntry.writeDatabaseEntryToFile(
entry, new File("Pf3D7_03.not-flatten"), false, true, false,
+ DocumentEntryFactory.EMBL_FORMAT, null);*/
+
+ //
+ //
+
+ final String names[] = {
+ "bin.fas",
+ "chab01.fas",
+ "chab02.fas",
+ "chab03.fas",
+ "chab04.fas",
+ "chab05.fas",
+ "chab06.fas",
+ "chab07.fas",
+ "chab08.fas",
+ "chab09.fas",
+ "chab10.fas",
+ "chab11.fas",
+ "chab12.fas",
+ "chab13.fas",
+ "chab14.fas",
+ "chab99.fas" };
+
+ for(int i=0;i < names.length; i++)
+ {
+ System.out.println(i+" "+names[i]);
+ Entry entry = ReadAndWriteEntry.readEntryFromDatabase(names[i]);
+ ReadAndWriteEntry.writeDatabaseEntryToFile(
+ entry, new File(names[i]+".embl"), true, true, false,
DocumentEntryFactory.EMBL_FORMAT, null);
+ }
}
catch(Exception e)
{
--
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