From 563892e31b1d8d1f242010adbd38bfbaebdf4d54 Mon Sep 17 00:00:00 2001
From: Fatima Silva <f.silva-franco@liverpool.ac.uk>
Date: Mon, 3 Nov 2014 19:05:25 +0000
Subject: [PATCH] Added uORF, sORF and tnaORF as extra keys
---
etc/key_mapping | 3 +++
etc/options | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/etc/key_mapping b/etc/key_mapping
index 0d2abbf79..3a7f179df 100644
--- a/etc/key_mapping
+++ b/etc/key_mapping
@@ -24,3 +24,6 @@ modified_amino_acid_feature misc_feature note=modified_amino_a
snRNA ncRNA ncRNA_class=snRNA
snoRNA ncRNA ncRNA_class=snoRNA
nucleotide_match misc_feature note=nucleotide_match
+uORF misc_feature note=uORF
+sORF misc_feature note=sORF
+tnaORF misc_feature note=tnaORF
diff --git a/etc/options b/etc/options
index 4ab7ec29e..8a2c2aea0 100644
--- a/etc/options
+++ b/etc/options
@@ -423,7 +423,7 @@ extra_keys = \
TMM signalP
# this list is added to the keys from the feature_keys_gff file
-extra_keys_gff = CDS spliced_leader_RNA sequence_variant fasta_record
+extra_keys_gff = CDS uORF sORF tnaORF spliced_leader_RNA sequence_variant fasta_record
# Names of qualifiers to search when attempting to find the primary or display
# name of a gene. These qualifiers names are searched in order when looking
--
GitLab