From 56a5e8bec5d04f1968d3f66f0cf8410dce9e83a8 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 22 May 2006 12:33:23 +0000
Subject: [PATCH] fixes to use uniquename
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4356 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/chado/JdbcDAO.java | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/chado/JdbcDAO.java b/uk/ac/sanger/artemis/chado/JdbcDAO.java
index f4a6715f8..437c08581 100644
--- a/uk/ac/sanger/artemis/chado/JdbcDAO.java
+++ b/uk/ac/sanger/artemis/chado/JdbcDAO.java
@@ -80,7 +80,7 @@ public class JdbcDAO
throws SQLException
{
Statement st = conn.createStatement();
- String sql = "SELECT name, residues from " + schema +
+ String sql = "SELECT name, uniquename, residues from " + schema +
".feature where feature_id = '" + feature_id + "'";
appendToLogFile(sql, sqlLog);
@@ -90,6 +90,7 @@ public class JdbcDAO
ChadoFeature feature = new ChadoFeature();
feature.setName(rs.getString("name"));
+ feature.setUniquename(rs.getString("uniquename"));
feature.setResidues(rs.getBytes("residues"));
return feature;
}
@@ -344,7 +345,7 @@ public class JdbcDAO
throws SQLException
{
String sql = new String(
- "SELECT abbreviation, name, feature_id, type_id FROM organism, "+
+ "SELECT abbreviation, uniquename, name, feature_id, type_id FROM organism, "+
schema + ".feature WHERE (");
for(int j = 0; j < cvterm_ids.size(); j++)
@@ -372,6 +373,7 @@ public class JdbcDAO
feature.setOrganism(organism);
feature.setId( rs.getInt("feature_id") );
feature.setName( rs.getString("name") );
+ feature.setUniquename( rs.getString("uniquename") );
feature.setCvterm(new ChadoCvterm());
feature.getCvterm().setCvtermId( rs.getLong("type_id") );
--
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