From 5877010bb825cc05fa3c0a23519c984f8a63758e Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Mon, 19 Mar 2012 09:17:20 +0000
Subject: [PATCH] fix in isGTF()
---
uk/ac/sanger/artemis/io/GFFStreamFeature.java | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/io/GFFStreamFeature.java b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
index 3bb349fd1..1909bed71 100644
--- a/uk/ac/sanger/artemis/io/GFFStreamFeature.java
+++ b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
@@ -1374,7 +1374,8 @@ public class GFFStreamFeature extends SimpleDocumentFeature
if(feature.getQualifiers().getQualifierByName("gene_id") != null &&
feature.getQualifiers().getQualifierByName("transcript_id") != null)
{
- logger4j.debug(feature.getEntry().getName()+" is in GTF format");
+ if(feature.getEntry() != null)
+ logger4j.debug(feature.getEntry().getName()+" is in GTF format");
return true;
}
return false;
--
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