From 59f90c28da7d6e5637ab12ff9ec18a42685351d4 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 8 Sep 2008 13:10:59 +0000
Subject: [PATCH] strip translation qualifiers from CDS
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8744 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/io/GenbankTblOutputStream.java | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/uk/ac/sanger/artemis/io/GenbankTblOutputStream.java b/uk/ac/sanger/artemis/io/GenbankTblOutputStream.java
index 22bb247bc..f77c0f22d 100644
--- a/uk/ac/sanger/artemis/io/GenbankTblOutputStream.java
+++ b/uk/ac/sanger/artemis/io/GenbankTblOutputStream.java
@@ -149,6 +149,10 @@ public class GenbankTblOutputStream
{
Qualifier current_qualifier = (Qualifier) qualifiers.elementAt(j);
+ if(feature.getKey().getKeyString().equals("CDS") &&
+ current_qualifier.getName ().equals("translation"))
+ continue;
+
final QualifierInfo qualifier_info =
entry_information.getQualifierInfo (current_qualifier.getName ());
@@ -167,6 +171,7 @@ public class GenbankTblOutputStream
qualifierStr = qualifierStr.substring(1);
if(qualifierStr.endsWith("\""))
qualifierStr = qualifierStr.substring(0, qualifierStr.length()-1);
+
writer.write("\n\t\t\t"+current_qualifier.getName()+"\t"+
qualifierStr);
}
--
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