From 5ae3e9e16f18fde7ebc14e59ef72b31192bcf912 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 27 May 2009 10:45:32 +0000
Subject: [PATCH] SO term names changed
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10916 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../artemis/components/TransferAnnotationTool.java | 3 +++
.../artemis/components/genebuilder/ProteinMapPanel.java | 9 ++++++---
2 files changed, 9 insertions(+), 3 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/TransferAnnotationTool.java b/uk/ac/sanger/artemis/components/TransferAnnotationTool.java
index 6e53cb7b8..adf661bb9 100644
--- a/uk/ac/sanger/artemis/components/TransferAnnotationTool.java
+++ b/uk/ac/sanger/artemis/components/TransferAnnotationTool.java
@@ -90,8 +90,10 @@ class TransferAnnotationTool extends JFrame
"isObsolete",
"timelastmodified",
"cytoplasm_location",
+ "cytoplasmic_polypeptide_region",
"membrane_structure",
"non_cytoplasm_location",
+ "non_cytoplasmic_polypeptide_region",
"orthologous_to",
"paralogous_to",
"pepstats_file",
@@ -102,6 +104,7 @@ class TransferAnnotationTool extends JFrame
"blastn_file",
"systematic_id",
"transmembrane",
+ "transmembrane_polypeptide_region",
"previous_systematic_id"
};
diff --git a/uk/ac/sanger/artemis/components/genebuilder/ProteinMapPanel.java b/uk/ac/sanger/artemis/components/genebuilder/ProteinMapPanel.java
index 259705280..aecfc8786 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/ProteinMapPanel.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/ProteinMapPanel.java
@@ -58,9 +58,12 @@ public class ProteinMapPanel extends MapPanel
public static String[] TMHMM =
{
"membrane_structure",
- "non_cytoplasm_location",
- "transmembrane",
- "cytoplasm_location"
+ "non_cytoplasm_location",
+ "non_cytoplasmic_polypeptide_region",
+ "transmembrane",
+ "transmembrane_polypeptide_region",
+ "cytoplasm_location",
+ "cytoplasmic_polypeptide_region"
};
private static String GPI_ANCHORED = "GPI_anchor_cleavage_site";
//private static String PlasmoAP_SCORE = "PlasmoAP_score";
--
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