From 5aee7aff0ddcb9b9d5df303ed57716afc465c4af Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Tue, 26 Jul 2011 14:24:11 +0100
Subject: [PATCH] fix to run in headless
---
.../components/TransferAnnotationToolTest.java | 11 ++++++++---
1 file changed, 8 insertions(+), 3 deletions(-)
diff --git a/test/uk/ac/sanger/artemis/components/TransferAnnotationToolTest.java b/test/uk/ac/sanger/artemis/components/TransferAnnotationToolTest.java
index a62f82201..412e61b82 100644
--- a/test/uk/ac/sanger/artemis/components/TransferAnnotationToolTest.java
+++ b/test/uk/ac/sanger/artemis/components/TransferAnnotationToolTest.java
@@ -48,6 +48,7 @@ import uk.ac.sanger.artemis.FeatureVector;
import uk.ac.sanger.artemis.Options;
import uk.ac.sanger.artemis.SimpleEntryGroup;
+import uk.ac.sanger.artemis.io.DocumentEntryFactory;
import uk.ac.sanger.artemis.io.EntryInformation;
import uk.ac.sanger.artemis.io.Key;
import uk.ac.sanger.artemis.sequence.Bases;
@@ -187,11 +188,11 @@ public class TransferAnnotationToolTest
final Document entryDocument =
DocumentFactory.makeDocument(url.getFile());
- final uk.ac.sanger.artemis.io.Entry emblEntry =
- EntryFileDialog.getEntryFromFile(null, entryDocument,
- artemisEntryInformation, false);
try
{
+ final uk.ac.sanger.artemis.io.Entry emblEntry =
+ DocumentEntryFactory.makeDocumentEntry(artemisEntryInformation,
+ entryDocument, null);
final Entry entry = new Entry(emblEntry);
final EntryGroup entryGroup = new SimpleEntryGroup(entry.getBases());
entryGroup.add(entry);
@@ -205,6 +206,10 @@ public class TransferAnnotationToolTest
{
Assert.fail(nse.getMessage());
}
+ catch(Exception e)
+ {
+ Assert.fail(e.getMessage());
+ }
return null;
}
--
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