From 5c59d2504855c2f07a30fb9af3b0b42f58a6d9af Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 30 Apr 2010 08:02:31 +0000
Subject: [PATCH] set max number of loops to wait for file
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13778 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
etc/run_blastx.sanger | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/etc/run_blastx.sanger b/etc/run_blastx.sanger
index d6c79cff0..f2637bc3a 100755
--- a/etc/run_blastx.sanger
+++ b/etc/run_blastx.sanger
@@ -86,7 +86,7 @@ run_one_prog () {
# Artemis can read compressed files
- while [ ! -f $OUTPUT_FILE ]; do sleep 2; done
+ count=0; while (test ! -f $OUTPUT_FILE) && (test $count -lt 1000) ; do sleep 2; count+=1; done
gzip -9 $OUTPUT_FILE
zip -j ${DIRNAME}blastx.zip ${OUTPUT_FILE}.gz
--
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